rna1693, rna1693 (mRNA) Nannochloropsis gaditana

Overview
Namerna1693
Unique Namerna1693
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2496
Alignment locationCM002457.1:1269471..1270821 -

Link to JBrowse

Properties
Property NameValue
Productpyridoxamine 5'-phosphate oxidase-related FMN-binding protein
Orig transcript idgnl|cribi|Naga_100501g2.4122.mrna
Orig protein idgnl|cribi|Naga_100501g2.4122
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1269471..1270821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100501g2gene1630Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28985.1cds1689Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1693rna1693-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1693 ID=rna1693|Name=rna1693|organism=Nannochloropsis gaditana|type=mRNA|length=2496bp
ATGTCCCCCTCCACGGCAAATCGCAGGCAACATACGGTCATATTTCTCGC
CTTGGGTAGTTTAGGGGATGTTTTACCCGTCCTGGCCGTCGCACATCGTT
TCGGGCGCAGGCTCGACCGCCGGGGTCCTTGTCCTTCTCGAAGGAAACAC
CTTCCGGCCCTTGTTTTCATCACACATACACTCTACCTCCCCCGTCTCAA
GACACTGCTCGAACGGGCCCTTCCTCGGCTTTCGCAGGCACCCGTGCTCC
ACATTGAAGGGATTGACAGCCCACCCCTTCCCCTTCGGAGGGCTGGACCC
GTCTCGGTCCCCGACGAGCTCGAGCAATGCCTGGCTGCTAGCCGCGGCCA
TGCACCCATCGCCCTCTTGGCGTGCAATCTCGTTGCTCGCTTCGGTGTCC
ACATTGGGGAAATCCTGGGCGCTGCCTCGTCTGCCGTTCTCGCTCCCTCC
CTTCCCCCGCCCACCCCCTCCCCCTCCCCTACCCTCCTCCGGAACCTGCT
AGGCCCCAAATTCCTGCGTCTCCTCGAGGACACAGGCACAGACCGGCTGA
GATACATGGAGTACGGGATGCTCAGCCTCTTCCTCCCGGCCTACCACGCC
TTCCGGGAGCGGCACGGGCTGAGCCCGTGCCTTTCCTCCCCGTCTGCCCC
CCCCGCCCCCCGGACTGCCTCCCAGGCCGCCCTCTACGCCCTTCGGGGGA
ACCTTCCCTTCCTGTACGGTGTCAGCGAAGGCTTTTTCCCAAAACCCGGA
TATTGGCCCGAGAGCTCGGTCTTTTGCGGGGCTTGGACCTGGGCCCAGGA
GGAGGAGGTGGGGAGGGAGGGCGGGTGGGAGGGAGGGCAAGAGGATGGGG
AGGGATGGGTTCCGGATGAAGAGCTCCGACGTTTTGTGGAGGGGGAAGGA
TGGCCGCCTAAGAAGAAATCGGCCACGGAGGGCAACGTGAGGCGTGTGTC
CGGGGGGGACGGCAAGGTTAAGGTGAGTGCAAGGACAGCAGGGTCTTCCC
TCCCTCCATTGATCTGCCTGGACATGGGCTCCATGATCGAAACGGAGCTG
ATGGGGAGAGAAGAATGGGAGGCCCTTGTGGAGGAGGTTCTGGTCGCCTT
GAAGAAGGTCTTTCCCTCTTCTACTCCGGCGGCGGCTCTTTCTGTGCCTG
CCTCTACCCCTTTCGCTGCCCGACGGATCGCGTTTCGTCCTCCCTCTCCC
TCCCATCCCTCCCCCTCGACCGCCCCTTGGGCCCCGCTTTCAACCCCTTG
TCTTCTTTCCTCTCTGGCACCGCCGGTGTGGCCTCCTTCTCCTTCGTTAA
ATGTGGCACGGGAGGGGAAGGCAGGGATGAGTAGGGAAGGAAGGTTCGGT
CACGGGGTCAAGGGCCCCTCCCCCTCGGGCGGGGAGCGCGGGAAAAAAAG
ACCGAGACGCGCGGGTCGGGTCCAAGGGGGGTACGCGGCCGAAGAGAAGG
GGGAGAAGAAGGGAAAGGGCTGTCTTAAGGAGGAGGCGAGAGGGGAAAGC
GAAAGGGAGAGGTTGGGGGAGGAAGGGAAGGAGGGGGAGGAAGGGCAGGA
GGGGAAGGAGGCCGTGGAGGGACTGACGAAGGAAGGGACAAAGGACGAGG
AGGAGGGCAGAGGGAATGCTGGCACGACAAACACCTTTCTTGGTGAAGCT
GGATTTCGTTTGTTGTTGCTGCACGCTCCCGACCAGTCCTGCGGCGCGGG
GAAATCAAGGGGGGGGAACCCCGCCCTCCCAGCCCGAAGGCAACGACTGG
AGCAAGAAAGGAAGGAAATCCCACCGTGGTTATCGCGCCGACACGGTGGA
GGGGCCAAGAGACTCGTATCGCCAAAAAACCAAGATTTACGGTTACCTCG
CCAGGAACCGTTACCTCCCCACGTACAAGCAGAGCAGTCCCCTACCTCCC
CTACCTCCCTACCTCCCTTCCACCACCCCGGAAGCTTCCCTTCCCATCCA
TACTCCTCCCCCTATATTTTCCGCCTGCCGCCCACGACTTTCGTGCCCCA
TACCTGGCTCTTCCCTCGCTGTCGGCTGGTCATCCACCATGGCGGGTTGG
GCACCGTGATGGCGTGCCTAATGGGGAGGAGGCGGGGGAGGGAGGGGAAT
GGGGTGCCACAGCTAATCGTCCCAATTACCAAGGAGCAAGAAATGTGGGC
CATGCGCGTGGAGCATTTGGGTGTGGGAAGGGGCTTGAGCAGGGAGGGGG
GGAAGGGGCGGCGAGGCGGAGGGAGGGGTGGAAGGGAGGGGCGTGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGGCGTGTATCAGGCTCTTCAGGAGAT
GGAACGAGGTCGGGCAATGTGCCTGGAGAACGTTGCGCAGTACCGCGAGT
GGTTTCTTGCCGAAGACGGGGTAGGCCGAGCTGTTGACCTGCTCGTAGAG
CACATGGAGAGGAACGGAAATTCAAAAGTTTGAACCGGAAGGAAAGGAAC
CGAGGAATCGGCGGCCTTCACGATCGTATAGGATCTCCAGGAATGC
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protein sequence of rna1693

>rna1693-protein ID=rna1693-protein|Name=rna1693|organism=Nannochloropsis gaditana|type=polypeptide|length=343bp
MPNFNMVREPTDGISTRHGMALLFLLTTAVAAAGGAGVVLLLQQRGALSS
PHPLPPPSPHKKDRGKKHHTPVGSPSKSNMVSDPVEGKEDIFPPLPPTVV
ALLQSTRVCHLSTASTDGLPHLSLMRFTYRREEEVIIMTTRTDTKKYELL
CSMPKVAVLVHDFPSLRDEEDKEEDKKEEEEKEVRSDIGDRAGEVSAKFR
GNAFCGHGKGEKGGGVGGNEDGGEGGSKRPHRHEKEDGKGGGGKGKEGGD
GDGHTYAITLNGVARMETGEEAERYRSLHLKNNVAYSQFIEGPGIAVFTV
HVMSARICNVKDRVTYWDKRTATVEEGVRREEKGEGRGKRQEE
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mRNA from alignment at CM002457.1:1269471..1270821-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1693 ID=rna1693|Name=rna1693|organism=Nannochloropsis gaditana|type=mRNA|length=1351bp|location=Sequence derived from alignment at CM002457.1:1269471..1270821- (Nannochloropsis gaditana)
CTCGACAGCCAATTCTTCAGGGGGGAGGTTACCGTGTTGCAAGCCGCAGC
TAGCAGAACCTGCGGATTTTCACACCACTCCCACAGCCTTGTGCCTTATG
CACCATGTTAACACTGCGCCTTATTCCTTACACTCTTAGTCACAGATCTG
TTCGTGCGATCACGAGTGGTACACCGCATGGCCGCGAGACCCGCATGCTA
AACCTCCCGCCGCCCTGAGTTCTGCAGCGTTGTGACCCGATCCTGTTTTC
CCACGGCCATGCCTAATTTCAACATGGTACGCGAGCCTACGGATGGCATT
TCAACTAGGCATGGGATGGCTTTGCTGTTTTTATTGACGACGGCCGTAGC
TGCTGCGGGCGGCGCGGGAGTCGTCCTGCTTCTACAGCAGCGAGGGGCCC
TTTCCTCCCCCCATCCCCTCCCTCCCCCTTCACCGCACAAAAAAGATCGA
GGGAAAAAGCACCATACGCCCGTGGGAAGTCCAAGCAAAAGCAATATGGT
GAGCGATCCCGTGGAAGGGAAGGAAGACATTTTCCCCCCCTTACCACCCA
CAGTGGTGGCTTTGTTACAGTCCACCCGGGTCTGCCATTTGAGCACTGCC
AGCACGGATGGTCTCCCTCATTTGTCCTTGATGCGCTTCACCTACCGGAG
GGAGGAAGAAGTGATAATCATGACGACGCGCACGGACACGAAGAAGTACG
AATTGTTGTGTTCCATGCCCAAAGTGGCGGTCTTAGTCCACGATTTCCCC
TCCCTTCGGGACGAGGAGGACAAGGAGGAGGATAAAAAGGAGGAGGAGGA
GAAGGAAGTAAGAAGTGACATAGGGGATAGAGCTGGGGAGGTGTCGGCAA
AATTCCGAGGGAATGCTTTTTGTGGGCATGGAAAGGGTGAGAAGGGAGGA
GGAGTGGGAGGGAACGAGGACGGAGGAGAAGGAGGAAGCAAGAGGCCACA
TCGACATGAAAAGGAGGATGGAAAGGGCGGCGGAGGCAAAGGGAAAGAAG
GCGGTGACGGAGACGGACACACCTACGCGATCACCCTGAACGGCGTAGCC
CGAATGGAGACAGGGGAGGAAGCGGAACGTTACCGATCGTTACATTTGAA
AAATAACGTCGCCTACTCGCAGTTCATCGAGGGCCCCGGCATAGCAGTCT
TTACGGTGCACGTAATGAGCGCCCGGATTTGCAACGTGAAGGACCGGGTG
ACCTACTGGGATAAGCGCACGGCGACGGTAGAGGAAGGGGTTAGGAGGGA
GGAGAAGGGGGAGGGGAGAGGAAAGAGACAAGAGGAGTGAAGTCGGAATA
CACGGAAGGAAAGGAGTGTGCGATAAAGAAAATGAAAGGAAAATGGAAAG
C
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Coding sequence (CDS) from alignment at CM002457.1:1269471..1270821-

>rna1693 ID=rna1693|Name=rna1693|organism=Nannochloropsis gaditana|type=CDS|length=1032bp|location=Sequence derived from alignment at CM002457.1:1269471..1270821- (Nannochloropsis gaditana)
ATGCCTAATTTCAACATGGTACGCGAGCCTACGGATGGCATTTCAACTAG
GCATGGGATGGCTTTGCTGTTTTTATTGACGACGGCCGTAGCTGCTGCGG
GCGGCGCGGGAGTCGTCCTGCTTCTACAGCAGCGAGGGGCCCTTTCCTCC
CCCCATCCCCTCCCTCCCCCTTCACCGCACAAAAAAGATCGAGGGAAAAA
GCACCATACGCCCGTGGGAAGTCCAAGCAAAAGCAATATGGTGAGCGATC
CCGTGGAAGGGAAGGAAGACATTTTCCCCCCCTTACCACCCACAGTGGTG
GCTTTGTTACAGTCCACCCGGGTCTGCCATTTGAGCACTGCCAGCACGGA
TGGTCTCCCTCATTTGTCCTTGATGCGCTTCACCTACCGGAGGGAGGAAG
AAGTGATAATCATGACGACGCGCACGGACACGAAGAAGTACGAATTGTTG
TGTTCCATGCCCAAAGTGGCGGTCTTAGTCCACGATTTCCCCTCCCTTCG
GGACGAGGAGGACAAGGAGGAGGATAAAAAGGAGGAGGAGGAGAAGGAAG
TAAGAAGTGACATAGGGGATAGAGCTGGGGAGGTGTCGGCAAAATTCCGA
GGGAATGCTTTTTGTGGGCATGGAAAGGGTGAGAAGGGAGGAGGAGTGGG
AGGGAACGAGGACGGAGGAGAAGGAGGAAGCAAGAGGCCACATCGACATG
AAAAGGAGGATGGAAAGGGCGGCGGAGGCAAAGGGAAAGAAGGCGGTGAC
GGAGACGGACACACCTACGCGATCACCCTGAACGGCGTAGCCCGAATGGA
GACAGGGGAGGAAGCGGAACGTTACCGATCGTTACATTTGAAAAATAACG
TCGCCTACTCGCAGTTCATCGAGGGCCCCGGCATAGCAGTCTTTACGGTG
CACGTAATGAGCGCCCGGATTTGCAACGTGAAGGACCGGGTGACCTACTG
GGATAAGCGCACGGCGACGGTAGAGGAAGGGGTTAGGAGGGAGGAGAAGG
GGGAGGGGAGAGGAAAGAGACAAGAGGAGTGA
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Synonyms
Publications