EWM28985.1, cds1689 (CDS) Nannochloropsis gaditana

Overview
NameEWM28985.1
Unique Namecds1689
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1269532..1270563 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28985.1
Productpyridoxamine 5'-phosphate oxidase-related FMN-binding protein
Orig transcript idgnl|cribi|Naga_100501g2.4122.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1269532..1270563 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0055114oxidation-reduction process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
GO:0004733pyridoxamine-phosphate oxidase activity
GO:0010181FMN binding
GO:0016491oxidoreductase activity
Vocabulary: INTERPRO
TermDefinition
IPR011576Pyridox_Oxase_FMN-bd
IPR012349Split_barrel_FMN-bd
Homology
BLAST of EWM28985.1 vs. NCBI_GenBank
Match: gi|585111480|gb|EWM28985.1| (pyridoxamine 5'-phosphate oxidase-related FMN-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 699.508 bits (1804), Expect = 0.000e+0
Identity = 343/343 (100.00%), Postives = 343/343 (100.00%), Query Frame = 0
Query:    1 MPNFNMVREPTDGISTRHGMALLFLLTTAVAAAGGAGVVLLLQQRGALSSPHPLPPPSPHKKDRGKKHHTPVGSPSKSNMVSDPVEGKEDIFPPLPPTVVALLQSTRVCHLSTASTDGLPHLSLMRFTYRREEEVIIMTTRTDTKKYELLCSMPKVAVLVHDFPSLRDEEDKEEDKKEEEEKEVRSDIGDRAGEVSAKFRGNAFCGHGKGEKGGGVGGNEDGGEGGSKRPHRHEKEDGKGGGGKGKEGGDGDGHTYAITLNGVARMETGEEAERYRSLHLKNNVAYSQFIEGPGIAVFTVHVMSARICNVKDRVTYWDKRTATVEEGVRREEKGEGRGKRQEE 343
            MPNFNMVREPTDGISTRHGMALLFLLTTAVAAAGGAGVVLLLQQRGALSSPHPLPPPSPHKKDRGKKHHTPVGSPSKSNMVSDPVEGKEDIFPPLPPTVVALLQSTRVCHLSTASTDGLPHLSLMRFTYRREEEVIIMTTRTDTKKYELLCSMPKVAVLVHDFPSLRDEEDKEEDKKEEEEKEVRSDIGDRAGEVSAKFRGNAFCGHGKGEKGGGVGGNEDGGEGGSKRPHRHEKEDGKGGGGKGKEGGDGDGHTYAITLNGVARMETGEEAERYRSLHLKNNVAYSQFIEGPGIAVFTVHVMSARICNVKDRVTYWDKRTATVEEGVRREEKGEGRGKRQEE
Sbjct:    1 MPNFNMVREPTDGISTRHGMALLFLLTTAVAAAGGAGVVLLLQQRGALSSPHPLPPPSPHKKDRGKKHHTPVGSPSKSNMVSDPVEGKEDIFPPLPPTVVALLQSTRVCHLSTASTDGLPHLSLMRFTYRREEEVIIMTTRTDTKKYELLCSMPKVAVLVHDFPSLRDEEDKEEDKKEEEEKEVRSDIGDRAGEVSAKFRGNAFCGHGKGEKGGGVGGNEDGGEGGSKRPHRHEKEDGKGGGGKGKEGGDGDGHTYAITLNGVARMETGEEAERYRSLHLKNNVAYSQFIEGPGIAVFTVHVMSARICNVKDRVTYWDKRTATVEEGVRREEKGEGRGKRQEE 343          
BLAST of EWM28985.1 vs. NCBI_GenBank
Match: gi|553194473|ref|XP_005855963.1| (pyridoxamine phosphate [Nannochloropsis gaditana CCMP526] >gi|422293106|gb|EKU20406.1| pyridoxamine phosphate [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 169.088 bits (427), Expect = 1.322e-47
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0
Query:   80 MVSDPVEGKEDIFPPLPPTVVALLQSTRVCHLSTASTDGLPHLSLMRFTYRREEEVIIMTTRTDTKKYELLCSMPKVAVL 159
            MVSDPVEGKEDIFPPLPPTVVALLQSTRVCHLSTASTDGLPHLSLMRFTYRREEEVIIMTTRTDTKKYELLCSMPKVAVL
Sbjct:    1 MVSDPVEGKEDIFPPLPPTVVALLQSTRVCHLSTASTDGLPHLSLMRFTYRREEEVIIMTTRTDTKKYELLCSMPKVAVL 80          
BLAST of EWM28985.1 vs. NCBI_GenBank
Match: gi|299473450|emb|CBN77847.1| (pyridoxamine 5'-phosphate oxidase-related FMN-binding [Ectocarpus siliculosus])

HSP 1 Score: 91.2781 bits (225), Expect = 1.451e-17
Identity = 44/77 (57.14%), Postives = 58/77 (75.32%), Query Frame = 0
Query:   88 KEDIFPPLPPTVVALLQSTRVCHLSTASTDGLPHLSLMRFTYRREEEVIIMTTRTDTKKYELLCSMPKVAVLVHDFP 164
            + D+ PPLP  VV LLQ++R+C LST S D  PHLSLM FTY   +EVII++TR DTKK++L+ +   VA+LVH+FP
Sbjct:  101 QADMTPPLPDDVVRLLQASRLCFLSTFSNDH-PHLSLMNFTYHHTDEVIILSTRRDTKKFQLVQTGRNVALLVHEFP 176          

HSP 2 Score: 79.337 bits (194), Expect = 2.546e-13
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 0
Query:  258 ITLNGVARMETGEEAERYRSLHLKNNVAYSQFIEGPGIAVFTVHVMSARICNVKDRVTYWD 318
            ITLNG A ++ GE+AERYR LH + N     FI GP IA+ TV V SARICNV+D VT W+
Sbjct:  205 ITLNGTATIQEGEQAERYRDLHARKNPNSKTFIFGPNIAIITVRVRSARICNVRDEVTVWN 265          
BLAST of EWM28985.1 vs. NCBI_GenBank
Match: gi|551668664|ref|XP_005837091.1| (hypothetical protein GUITHDRAFT_135304 [Guillardia theta CCMP2712] >gi|428181247|gb|EKX50111.1| hypothetical protein GUITHDRAFT_135304 [Guillardia theta CCMP2712])

HSP 1 Score: 89.3521 bits (220), Expect = 1.540e-17
Identity = 49/122 (40.16%), Postives = 65/122 (53.28%), Query Frame = 0
Query:   86 EGKEDIFPPLPPTVVALLQSTRVCHLSTASTDGLPHLSLMRFTYRREEE-VIIMTTRTDTKKYELLCSMPKVAVLVHDFPSLRDEEDKEEDKKEEEEKEVRSDIGDRAGEVSAKFRGNAFCG 206
            + +E   PPLPP V  +L S  +CHLS       PH SLM FT+  EEE +IIMTTR DTKKY LL   P V++LVHDFP +        +K  + E  +    G+    ++ K +    C 
Sbjct:   54 DNEESYTPPLPPEVKEMLTSASLCHLSCNDKGDAPHTSLMNFTFVPEEEDLIIMTTRKDTKKYRLLSQRPDVSLLVHDFPQISRYRQIHLEKNRQYENFIE---GEDKAVITVKVQRARMCN 172          

HSP 2 Score: 60.077 bits (144), Expect = 3.777e-7
Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = 0
Query:  271 EAERYRSLHLKNNVAYSQFIEGPGIAVFTVHVMSARICNVKDRVTYWD 318
            +  RYR +HL+ N  Y  FIEG   AV TV V  AR+CNVKD+VT W+
Sbjct:  134 QISRYRQIHLEKNRQYENFIEGEDKAVITVKVQRARMCNVKDQVTTWE 181          
BLAST of EWM28985.1 vs. NCBI_GenBank
Match: gi|551556514|ref|XP_005765376.1| (hypothetical protein EMIHUDRAFT_104086 [Emiliania huxleyi CCMP1516] >gi|485615324|gb|EOD12947.1| hypothetical protein EMIHUDRAFT_104086 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 80.4925 bits (197), Expect = 6.963e-14
Identity = 34/65 (52.31%), Postives = 53/65 (81.54%), Query Frame = 0
Query:  256 YAITLNGVARMETGEEAERYRSLHLKNNVAYSQFIEGPGIAVFTVHVMSARICNVKDRVTYWDKR 320
            ++ITL+GV R E+GE AERYR++HL+ N AY+QFI G  IA+ TV + +AR+C+V DRV++++++
Sbjct:  167 HSITLSGVVREESGEMAERYRAIHLEKNQAYAQFIVGDDIAILTVEIETARVCDVNDRVSHFERQ 231          

HSP 2 Score: 75.485 bits (184), Expect = 3.308e-12
Identity = 40/81 (49.38%), Postives = 51/81 (62.96%), Query Frame = 0
Query:   90 DIFPPLPPTVVALLQSTRVCHLSTASTDGLPHLSLMRFTYRRE-------EEVIIMTTRTDTKKYELLCSMPKVAVLVHDF 163
            D  PPLP  VV +L    +C L+T+S D  PHLSLMRF++ R         EV+I++TR  TKKY  LC+   VA+LVHDF
Sbjct:   68 DFTPPLPEPVVQVLTRCCLCFLATSSGDS-PHLSLMRFSFSRSLAAQRPGAEVLIVSTRRSTKKYATLCANRNVALLVHDF 147          
BLAST of EWM28985.1 vs. NCBI_GenBank
Match: gi|551580414|ref|XP_005775748.1| (hypothetical protein EMIHUDRAFT_239777 [Emiliania huxleyi CCMP1516] >gi|485627727|gb|EOD23319.1| hypothetical protein EMIHUDRAFT_239777 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 79.337 bits (194), Expect = 1.862e-13
Identity = 34/65 (52.31%), Postives = 52/65 (80.00%), Query Frame = 0
Query:  256 YAITLNGVARMETGEEAERYRSLHLKNNVAYSQFIEGPGIAVFTVHVMSARICNVKDRVTYWDKR 320
            ++ITL+GV R E GE AERYR++HL+ N AY+QFI G  IA+ TV + +AR+C+V DRV++++++
Sbjct:  167 HSITLSGVVREERGEMAERYRAIHLEKNQAYAQFIVGDDIAILTVEIETARVCDVNDRVSHFERQ 231          

HSP 2 Score: 75.485 bits (184), Expect = 3.542e-12
Identity = 40/81 (49.38%), Postives = 51/81 (62.96%), Query Frame = 0
Query:   90 DIFPPLPPTVVALLQSTRVCHLSTASTDGLPHLSLMRFTYRRE-------EEVIIMTTRTDTKKYELLCSMPKVAVLVHDF 163
            D  PPLP  VV +L    +C L+T+S D  PHLSLMRF++ R         EV+I++TR  TKKY  LC+   VA+LVHDF
Sbjct:   68 DFTPPLPEPVVQVLTRCCLCFLATSSGDS-PHLSLMRFSFSRSLAAQRPGAEVLIVSTRRSTKKYATLCANRNVALLVHDF 147          
BLAST of EWM28985.1 vs. NCBI_GenBank
Match: gi|929773410|ref|XP_014161638.1| (hypothetical protein SARC_00170 [Sphaeroforma arctica JP610] >gi|906959766|gb|KNC87736.1| hypothetical protein SARC_00170 [Sphaeroforma arctica JP610])

HSP 1 Score: 73.1738 bits (178), Expect = 2.067e-11
Identity = 36/76 (47.37%), Postives = 54/76 (71.05%), Query Frame = 0
Query:   88 KEDIFPPLPPTVVALLQSTRVCHLSTASTDGLPHLSLMRFTYRREEEVIIMTTRTDTKKY-ELLCSMPKVAVLVHD 162
            +E   PPLP  VV +L+++ + +L+T + +G PHLSLM FTY +E+E I+++TR DTKK   LL S   V++L+HD
Sbjct:   74 EESFSPPLPSVVVNVLKTSGLSYLATVNAEGEPHLSLMAFTYVQEDEKIVLSTRRDTKKANNLLVSGGIVSLLIHD 149          

HSP 2 Score: 72.7886 bits (177), Expect = 3.522e-11
Identity = 36/71 (50.70%), Postives = 46/71 (64.79%), Query Frame = 0
Query:  255 TYAITLNGVARMETGEEAERYRSLHLKNNVAYSQFIEGPGIAVFTVHVMSARICNVKDRVTYWDKRTATVE 325
            T +ITL G A +E+GE AERYR+ HL+NN   + FI G  IA+ TV V+ A ICN KD+V  W   + T E
Sbjct:  170 TCSITLVGEASVESGERAERYRAKHLENNPKGAVFINGDNIAIVTVKVLEASICNSKDKVKRWTASSGTTE 240          
BLAST of EWM28985.1 vs. NCBI_GenBank
Match: gi|1147428387|ref|XP_020074356.1| (hypothetical protein HYPBUDRAFT_163527 [Hyphopichia burtonii NRRL Y-1933] >gi|1064975162|gb|ODV65289.1| hypothetical protein HYPBUDRAFT_163527 [Hyphopichia burtonii NRRL Y-1933])

HSP 1 Score: 72.0182 bits (175), Expect = 2.179e-11
Identity = 52/155 (33.55%), Postives = 75/155 (48.39%), Query Frame = 0
Query:   95 LPPTVVALLQSTRVCHLSTASTDGLPHLSLMRFTY--RREEEVIIMTTRTDTKKYELLCSMPKVAVLVHDFPSLRDEEDKEED----KKEEEEKEVRSDIG-DRAGEVSAKFRGNA--FCGHGKGEKGG---GVGGNEDGGEGGSKRPHRHEKED 237
            LP +VV LL+STR  HL+T   D  PH+SLM +TY  +  E  II T+   T KYE + S P V++LVHD+ S R+ ++   D    K+     E+ +++       VS    G A     H   EK      +  N D  +    + +  E ED
Sbjct:    7 LPDSVVKLLKSTRFVHLATCK-DNFPHVSLMNYTYYSKENEYYIITTSPKKTTKYENIISNPNVSLLVHDWISARNPDESTSDSVANKRRNSLYELLTNLNKSEISSVSVMINGKAEILSPHTDLEKFNFFKSLHLNNDSIDAIQSKNYI-ESED 159          
BLAST of EWM28985.1 vs. NCBI_GenBank
Match: gi|1205210511|gb|OWB56986.1| (hypothetical protein B5S28_g2907 [[Candida] boidinii] >gi|1205216393|gb|OWB62868.1| hypothetical protein B5S29_g3816 [[Candida] boidinii] >gi|1205226572|gb|OWB73046.1| hypothetical protein B5S31_g2778 [[Candida] boidinii] >gi|1205232259|gb|OWB78732.1| hypothetical protein B5S32_g2932 [[Candida] boidinii])

HSP 1 Score: 71.633 bits (174), Expect = 3.515e-11
Identity = 54/237 (22.78%), Postives = 95/237 (40.08%), Query Frame = 0
Query:   94 PLPPTVVALLQSTRVCHLSTASTDGLPHLSLMRFTYRREEEV-------------IIMTTRTDTKKYELLCSMPKVAVLVHDFPSLRDEEDKEEDKKEEEEKEVRSDIGDRAGEVSAKFRGNAFCGHGKGEKGGGVGGNEDGGEGGSKRPHRHEKEDGKGGGGKGKEGGDGDGHTYAITLNGVARMETGEEAERYRSLHLKNNVAYSQFIEGPGIAVFTVHVMSARICNVKDRVTYW 317
            PLP  V+ L++S++  HL T S D +PH+SLM +T+   E+V             I++TT   T+KYE + S   V+VL+HD+ S    +D++  +    E++ +S+I      +      N          G     NED                                                EE   Y++LHL  N +   FI+G  +A+  + + ++++ +  + V  +
Sbjct:   10 PLPENVLTLIKSSKFLHLGT-SKDNIPHVSLMNYTFVPSEKVFNSSESSSTSAPLIVVTTHKKTQKYENINSNSNVSVLIHDWISAASNDDEKSSELINNEEDCKSNILKLLQNI----NQNEISSLSVTLSGSAKILNED-----------------------------------------------NEERLYYKNLHLNKNPSAKVFIDGDDVAIILIQITASKVADSDNNVASY 194          
BLAST of EWM28985.1 vs. NCBI_GenBank
Match: gi|598069173|ref|XP_007375415.1| (hypothetical protein SPAPADRAFT_61222 [Spathaspora passalidarum NRRL Y-27907] >gi|344301834|gb|EGW32139.1| hypothetical protein SPAPADRAFT_61222 [Spathaspora passalidarum NRRL Y-27907])

HSP 1 Score: 71.2478 bits (173), Expect = 4.092e-11
Identity = 33/82 (40.24%), Postives = 59/82 (71.95%), Query Frame = 0
Query:   95 LPPTVVALLQSTRVCHLSTASTDGLPHLSLMRFTYRRE--EEVIIMTTRTDTKKYELLCSMPKVAVLVHDFPSLRDEEDKEE 174
            LP +V++LL+S+R  HL+T   D  PH+SLM +T+ ++  +++II++T T T KY+ + S P V++L+HD+ S++D  + +E
Sbjct:    7 LPDSVLSLLKSSRFIHLATCLNDK-PHVSLMNYTFCQQGDKQIIIISTPTRTTKYQNMLSNPNVSILIHDWISVKDTTESKE 87          
The following BLAST results are available for this feature:
BLAST of EWM28985.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111480|gb|EWM28985.1|0.000e+0100.00pyridoxamine 5'-phosphate oxidase-related FMN-bind... [more]
gi|553194473|ref|XP_005855963.1|1.322e-47100.00pyridoxamine phosphate [Nannochloropsis gaditana C... [more]
gi|299473450|emb|CBN77847.1|1.451e-1757.14pyridoxamine 5'-phosphate oxidase-related FMN-bind... [more]
gi|551668664|ref|XP_005837091.1|1.540e-1740.16hypothetical protein GUITHDRAFT_135304 [Guillardia... [more]
gi|551556514|ref|XP_005765376.1|6.963e-1452.31hypothetical protein EMIHUDRAFT_104086 [Emiliania ... [more]
gi|551580414|ref|XP_005775748.1|1.862e-1352.31hypothetical protein EMIHUDRAFT_239777 [Emiliania ... [more]
gi|929773410|ref|XP_014161638.1|2.067e-1147.37hypothetical protein SARC_00170 [Sphaeroforma arct... [more]
gi|1147428387|ref|XP_020074356.1|2.179e-1133.55hypothetical protein HYPBUDRAFT_163527 [Hyphopichi... [more]
gi|1205210511|gb|OWB56986.1|3.515e-1122.78hypothetical protein B5S28_g2907 [[Candida] boidin... [more]
gi|598069173|ref|XP_007375415.1|4.092e-1140.24hypothetical protein SPAPADRAFT_61222 [Spathaspora... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1693rna1693Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications