rna1691, rna1691 (mRNA) Nannochloropsis gaditana

Overview
Namerna1691
Unique Namerna1691
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1230
Alignment locationCM002457.1:1265797..1266665 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100501g4.4124.mrna
Orig protein idgnl|cribi|Naga_100501g4.4124
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1265797..1266665 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100501g4gene1628Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28987.1cds1687Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1691rna1691-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1691 ID=rna1691|Name=rna1691|organism=Nannochloropsis gaditana|type=mRNA|length=1230bp
ATGAGCACGTCTCTTTCAGCCCCTCCTCCAACCAGGGAGAGTGGGCATGT
GGGTTCCCGCCCTAATTCGACAAGCCAGGAAAAGAAGGAAGGAAGCAAGC
GTAGCTATGCAAAGGAAGTCTCAGACTCCCTCTGGGTGGATGCATTGGCA
TATTTACTTGCCATCGTCATCCTCCTCAATTTCTGGTCGGCAGCGTTTTT
GGAACTGGTTATGTACGTCGTCTTCTATCCGCTGTGTCCATCGATCTGGT
ACGTGACACGCATTTTGGGCGTGAGATTCGGCTGGCTTTTCCCCATGCTG
TGCCTGAAGTGGTCCAACGTGCGCATCCGCATGACGGGCAAGGGAGCCGC
AGCCACCTCCTTGGGAGCAATCCCTCCCTCCCCCTTCTCCTTCTCCTCCT
CTTGGCAACGCTACCGAGACCTCTTGACGCCAGGGAAGCTGCCCAGGGCC
TTAATCATGATCAATCACTTGTCCTGGGCGGATACCTTTGTCCTTTCCCC
CTGGCTCCACGCCCACAACAGCGTGAACGGAGACACTTGCTGGCCTATGT
GGAAAGGGTTCATGCAGATGCCCTTGGGGTGGATCGCATACATGTCCGAA
TGCCCCGTATTGGGGTACGGGAAAGAAGTGGATTTGAAAACGATTCACAG
GAGCGTGACACGATTTTTCGAACGGCGGATGACCAAATTTTTCCTCTTCC
CGGAGGGCGCCGTGTTCAGAGAAGAAATGCGGTCGAAGTCACATCAATAC
GCGACTGCCAACAAGCTCCCTTTGCTGGATCATTGCCTTCTCCCAAAGCA
CGGTGCCTTTTACCGGGCGGGAAAGGAACTGCACCGGCAAGGAATGACGA
CCCTGGTGGACCTGACCCTGGCCTACCCCCCTGCGTCCTCCCTGTACGAC
GCTCCCTTCAACGTCCTTGACCTGGTCAAACGGCACGCAAAGCCCCTGTA
CCTCCCCCTGCATGTCCGCACTTTTGCCATGTCGGAGGTGCCCTGGGACG
AGGAAGGGAAGGTGCAGGATTGGCTGAACCAACGCTTTATGGAGAAAGAC
AAAATGTTGGAGGAGTATTACCAGAACAACGGAGGGGCCTTGGTGGAGGG
TGCGGTAGAAGAAGGCTCGCGCTGGCAAGACCTGTTGATGGATCTCTGTG
TGTGGATTGTCCTTCAGGCGGTCATGTACGGAGCTCTGTTGTACCTTGGG
AGAAGAATGCTGGGATATGGGCCGGTGTGA
back to top

protein sequence of rna1691

>rna1691-protein ID=rna1691-protein|Name=rna1691|organism=Nannochloropsis gaditana|type=polypeptide|length=195bp
MHSPMQKSWLSIALILACMTTPSAFLLAPPTTHLVKHYQGSTRLSASIYE
DVNTAVKQAMKDKDKEKLSALRNIKSALGNALKEEGAAETLPDEKAILIL
TKLRKQRQESIEMFIKGNRDDMVQAEKAELAILETYLPQLADEATTREWV
SAAIQETGASAKSDMGKVMGVMMKRYKGKTDNKLVSKLVGEMLGA
back to top

mRNA from alignment at CM002457.1:1265797..1266665-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1691 ID=rna1691|Name=rna1691|organism=Nannochloropsis gaditana|type=mRNA|length=869bp|location=Sequence derived from alignment at CM002457.1:1265797..1266665- (Nannochloropsis gaditana)
CGACGATAAGATTAATCATTTAATACATCAATAGAATTCCGCTAATTTAG
TTGACGGACACGATTTCCTTTTATTTATTTTTTCCCCCATGCTCATCACT
TCCACTTGAAGTTTGAGCATTACGTCAAGTTGTAGTTCTCGCTACCTTTT
CCTTCCCCCATCCGCTTGCCATGTCCTAAATTTTTCCAGTACCCGAACAC
GTATAGCTGTCCTCACCATCTTCCCTTTATCTGTTTGTGACATGCACAGC
CCCATGCAGAAAAGTTGGCTGAGCATCGCCTTGATCTTGGCGTGCATGAC
AACGCCGAGTGCCTTCCTACTGGCGCCTCCCACCACTCATCTAGTAAAAC
ACTATCAGGGCAGCACTCGCCTTTCTGCCTCCATTTATGAAGATGTCAAC
ACTGCCGTCAAACAAGCCATGAAAGACAAAGACAAGGAAAAGCTCAGCGC
CCTTCGAAACATCAAGTCGGCCCTCGGAAATGCTTTGAAAGAAGAAGGCG
CTGCGGAAACCTTGCCCGATGAAAAGGCCATTTTGATATTGACAAAACTA
CGCAAGCAACGTCAGGAATCGATCGAAATGTTTATTAAAGGAAATCGCGA
CGACATGGTCCAAGCAGAAAAAGCAGAACTGGCCATTTTGGAGACGTATT
TGCCCCAACTAGCAGACGAGGCTACTACGCGGGAATGGGTATCCGCTGCT
ATTCAGGAAACGGGCGCGAGCGCTAAAAGCGACATGGGAAAAGTCATGGG
CGTGATGATGAAAAGATATAAGGGAAAAACGGACAACAAACTCGTCTCCA
AGTTGGTGGGGGAGATGTTGGGTGCCTAATGCACCTGTAAAGGAAACGCA
TAGTGGAATTCGACCGGGT
back to top

Coding sequence (CDS) from alignment at CM002457.1:1265797..1266665-

>rna1691 ID=rna1691|Name=rna1691|organism=Nannochloropsis gaditana|type=CDS|length=588bp|location=Sequence derived from alignment at CM002457.1:1265797..1266665- (Nannochloropsis gaditana)
ATGCACAGCCCCATGCAGAAAAGTTGGCTGAGCATCGCCTTGATCTTGGC
GTGCATGACAACGCCGAGTGCCTTCCTACTGGCGCCTCCCACCACTCATC
TAGTAAAACACTATCAGGGCAGCACTCGCCTTTCTGCCTCCATTTATGAA
GATGTCAACACTGCCGTCAAACAAGCCATGAAAGACAAAGACAAGGAAAA
GCTCAGCGCCCTTCGAAACATCAAGTCGGCCCTCGGAAATGCTTTGAAAG
AAGAAGGCGCTGCGGAAACCTTGCCCGATGAAAAGGCCATTTTGATATTG
ACAAAACTACGCAAGCAACGTCAGGAATCGATCGAAATGTTTATTAAAGG
AAATCGCGACGACATGGTCCAAGCAGAAAAAGCAGAACTGGCCATTTTGG
AGACGTATTTGCCCCAACTAGCAGACGAGGCTACTACGCGGGAATGGGTA
TCCGCTGCTATTCAGGAAACGGGCGCGAGCGCTAAAAGCGACATGGGAAA
AGTCATGGGCGTGATGATGAAAAGATATAAGGGAAAAACGGACAACAAAC
TCGTCTCCAAGTTGGTGGGGGAGATGTTGGGTGCCTAA
back to top
Synonyms
Publications