EWM28987.1, cds1687 (CDS) Nannochloropsis gaditana

Overview
NameEWM28987.1
Unique Namecds1687
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1265837..1266424 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28987.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100501g4.4124.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1265837..1266424 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016884carbon-nitrogen ligase activity, with glutamine as amido-N-donor
Vocabulary: INTERPRO
TermDefinition
IPR003789Asn/Gln_tRNA_amidoTrfrase-rel
IPR023168GatB_Yqey_C
IPR019004Uncharacterised_YOR215C_mit
Homology
BLAST of EWM28987.1 vs. NCBI_GenBank
Match: gi|585111482|gb|EWM28987.1| (hypothetical protein Naga_100501g4 [Nannochloropsis gaditana])

HSP 1 Score: 398.667 bits (1023), Expect = 1.317e-140
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0
Query:    1 MHSPMQKSWLSIALILACMTTPSAFLLAPPTTHLVKHYQGSTRLSASIYEDVNTAVKQAMKDKDKEKLSALRNIKSALGNALKEEGAAETLPDEKAILILTKLRKQRQESIEMFIKGNRDDMVQAEKAELAILETYLPQLADEATTREWVSAAIQETGASAKSDMGKVMGVMMKRYKGKTDNKLVSKLVGEMLGA 195
            MHSPMQKSWLSIALILACMTTPSAFLLAPPTTHLVKHYQGSTRLSASIYEDVNTAVKQAMKDKDKEKLSALRNIKSALGNALKEEGAAETLPDEKAILILTKLRKQRQESIEMFIKGNRDDMVQAEKAELAILETYLPQLADEATTREWVSAAIQETGASAKSDMGKVMGVMMKRYKGKTDNKLVSKLVGEMLGA
Sbjct:    1 MHSPMQKSWLSIALILACMTTPSAFLLAPPTTHLVKHYQGSTRLSASIYEDVNTAVKQAMKDKDKEKLSALRNIKSALGNALKEEGAAETLPDEKAILILTKLRKQRQESIEMFIKGNRDDMVQAEKAELAILETYLPQLADEATTREWVSAAIQETGASAKSDMGKVMGVMMKRYKGKTDNKLVSKLVGEMLGA 195          
BLAST of EWM28987.1 vs. NCBI_GenBank
Match: gi|553194450|ref|XP_005855957.1| (hypothetical protein NGA_0547000 [Nannochloropsis gaditana CCMP526] >gi|422293100|gb|EKU20400.1| hypothetical protein NGA_0547000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 270.011 bits (689), Expect = 1.363e-90
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0
Query:   60 MKDKDKEKLSALRNIKSALGNALKEEGAAETLPDEKAILILTKLRKQRQESIEMFIKGNRDDMVQAEKAELAILETYLPQLADEATTREWVSAAIQETGASAKSDMGKVMGVMMKRYKGKTDNKLVSKLVGEMLGA 195
            MKDKDKEKLSALRNIKSALGNALKEEGAAETLPDEKAILILTKLRKQRQESIEMFIKGNRDDMVQAEKAELAILETYLPQLADEATTREWVSAAIQETGASAKSD+GKVMGVMMKRYKGKTDNKLVSKLVGEMLGA
Sbjct:    1 MKDKDKEKLSALRNIKSALGNALKEEGAAETLPDEKAILILTKLRKQRQESIEMFIKGNRDDMVQAEKAELAILETYLPQLADEATTREWVSAAIQETGASAKSDVGKVMGVMMKRYKGKTDNKLVSKLVGEMLGA 136          
BLAST of EWM28987.1 vs. NCBI_GenBank
Match: gi|299117470|emb|CBN73973.1| (GatB/YqeY [Ectocarpus siliculosus])

HSP 1 Score: 144.05 bits (362), Expect = 7.767e-40
Identity = 73/153 (47.71%), Postives = 99/153 (64.71%), Query Frame = 0
Query:   41 STRLSASIYEDVNTAVKQAMKDKDKEKLSALRNIKSALGNALKEEGAAETLPDEKAILILTKLRKQRQESIEMFIKGNRDDMVQAEKAELAILETYLPQLADEATTREWVSAAIQETGASAKSDMGKVMGVMMKRYKGKTDNKLVSKLVGEML 193
            ST LS  +++DV   +K +MK  DK KL  LR +++A     K  G+ + LPDEK I IL K+ KQ+QESI+M+ KG RDD+V+ E     +++  LPQLADEATT++WV  AI   GA   SDMGKVMG++MK +K + D  L  +LV   L
Sbjct:   56 STSLSMGVFDDVTAEMKASMKSGDKPKLEGLRMVRAAFLTETKAAGSGDKLPDEKCIAILRKMSKQQQESIDMYRKGKRDDLVEKETKTKQLIDAMLPQLADEATTQKWVDEAIASAGAKGPSDMGKVMGLLMKAHKTEMDGGLAQRLVSAQL 208          
BLAST of EWM28987.1 vs. NCBI_GenBank
Match: gi|1189387075|gb|OSX74155.1| (hypothetical protein BU14_0306s0033 [Porphyra umbilicalis])

HSP 1 Score: 133.65 bits (335), Expect = 1.635e-36
Identity = 72/149 (48.32%), Postives = 96/149 (64.43%), Query Frame = 0
Query:   47 SIYEDVNTAVKQAMKDKDKEKLSALRNIKSALGNALKEEGAAETLPDEKAILILTKLRKQRQESIEMFIKGNRDDMVQAEKAELAILETYLPQLADEATTREWVSAAIQETGASAKSDMGKVMGVMMKRYKGKTDNKLVSKLVGEMLGA 195
             I  DV   +K AMK KD + L  LRN+++A   A KE GA +TL D  A+  L +L KQR +SIEM+  G R D+ +AEK EL++++TYLP  ADEATTR WV  AI   GA+   D+GKVMG +MK ++ + D  LV K+  E+L A
Sbjct:    2 GIATDVTERMKVAMKAKDADTLRVLRNMRAAFLTAQKETGA-DTLDDAAAVACLKRLVKQRNQSIEMYETGGRTDLAEAEKFELSLIQTYLPSTADEATTRGWVEEAIAAIGATKPGDVGKVMGAVMKGHRSEVDGALVKKVAAELLSA 149          
BLAST of EWM28987.1 vs. NCBI_GenBank
Match: gi|1084665466|gb|OGP13484.1| (aspartyl-tRNA amidotransferase [Deltaproteobacteria bacterium GWA2_54_12])

HSP 1 Score: 126.716 bits (317), Expect = 7.028e-34
Identity = 68/148 (45.95%), Postives = 97/148 (65.54%), Query Frame = 0
Query:   47 SIYEDVNTAVKQAMKDKDKEKLSALRNIKSALGNALKEEGAAETLPDEKAILILTKLRKQRQESIEMFIKGNRDDMVQAEKAELAILETYLPQLADEATTREWVSAAIQETGASAKSDMGKVMGVMMKRYKGKTDNKLVSKLVGEMLG 194
            S+ +D++  +  AMK  DKE+LS +R + SA+    KE  A   L DE+ I +++ L KQRQ+SIE F KGNR D+V+ E  EL +L TYLP    EA  R+ +  A+ ETGA+ + DMGK+M V+M + KGK D K+V+ +V E+LG
Sbjct:    2 SLRQDIHKDIAVAMKSGDKERLSTVRMLMSAI--KYKEVDAHRELTDEETIAVISSLVKQRQDSIEQFTKGNRLDLVEKESKELEVLRTYLPPQLSEAEVRDIIKKAVAETGATGQKDMGKLMKVVMPQVKGKADGKMVNDIVKELLG 147          
BLAST of EWM28987.1 vs. NCBI_GenBank
Match: gi|1084753239|gb|OGP95236.1| (aspartyl-tRNA amidotransferase [Deltaproteobacteria bacterium RBG_19FT_COMBO_56_10])

HSP 1 Score: 123.25 bits (308), Expect = 1.444e-32
Identity = 68/149 (45.64%), Postives = 97/149 (65.10%), Query Frame = 0
Query:   47 SIYEDVNTAVKQAMKDKDKEKLSALRNIKSALGNALKEEGAAETLPDEKAILILTKLRKQRQESIEMFIKGNRDDMVQAEKAELAILETYLPQLADEATTREWVSAAIQETGASAKSDMGKVMGVMMKRYKGKTDNKLVSKLVGEMLGA 195
            S+ +D++  +  AMK  +KE+LS +R + SA+    KE  A   L DE+ I +++ L KQRQ+SIE F KGNR D+V+ E  EL +L TYLP    EA  R+ +  A+ ETGA+ + DMGK+M V+M + KGK D KLV+ +V E LG+
Sbjct:    2 SLRQDIHKDIAVAMKAGEKERLSTVRMLMSAI--KYKEVDAHRELTDEETIAVISTLVKQRQDSIEQFTKGNRLDLVEKETKELEVLRTYLPPQLSEAEVRDIIKKAVAETGATGQKDMGKLMKVIMPQVKGKADGKLVNDIVKEALGS 148          
BLAST of EWM28987.1 vs. NCBI_GenBank
Match: gi|494769541|ref|WP_007504949.1| (hypothetical protein [Caldalkalibacillus thermarum] >gi|334180035|gb|EGL82662.1| hypothetical protein CathTA2_1818 [Caldalkalibacillus thermarum TA2.A1])

HSP 1 Score: 120.939 bits (302), Expect = 1.208e-31
Identity = 66/148 (44.59%), Postives = 98/148 (66.22%), Query Frame = 0
Query:   47 SIYEDVNTAVKQAMKDKDKEKLSALRNIKSALGNALKEEGAAETLPDEKAILILTKLRKQRQESIEMFIKGNRDDMVQAEKAELAILETYLPQLADEATTREWVSAAIQETGASAKSDMGKVMGVMMKRYKGKTDNKLVSKLVGEMLG 194
            S+ + +N  +KQAMK+K+K +LS +R +K+AL N   + G A  L D+  + +L++  KQR+ES++ F K  RDD+V+    E+A+LETYLP+   E   R+ VS  I E GA++K+DMGKVM  +M + KGK D  LV++LV E L 
Sbjct:    2 SLVDQLNNDMKQAMKNKEKTRLSVIRMVKAALKNEEIKLGRA--LTDDDVLTVLSREMKQRKESLQEFEKAGRDDLVETLNQEIAVLETYLPEQLSEDELRQLVSDTIAEVGATSKADMGKVMSAIMPKVKGKADGSLVNRLVQEALA 147          
BLAST of EWM28987.1 vs. NCBI_GenBank
Match: gi|1025826308|ref|WP_063560194.1| (hypothetical protein [Bacillus horikoshii])

HSP 1 Score: 120.939 bits (302), Expect = 1.505e-31
Identity = 66/147 (44.90%), Postives = 96/147 (65.31%), Query Frame = 0
Query:   47 SIYEDVNTAVKQAMKDKDKEKLSALRNIKSALGNALKEEGAAETLPDEKAILILTKLRKQRQESIEMFIKGNRDDMVQAEKAELAILETYLPQLADEATTREWVSAAIQETGASAKSDMGKVMGVMMKRYKGKTDNKLVSKLVGEML 193
            S+ E +NT +KQAMKDKDKEKLS LR +KS++ N   + G    L +E+ + +L++  KQR++S++ F K  R+D+V   + E+AI+E Y+P+   E      V   I E  AS+K+DMGKVMG +M + KGK D  LV+KLV + L
Sbjct:    2 SLLERLNTDIKQAMKDKDKEKLSVLRMVKSSIQNESIKHG--RDLSEEEELTVLSRELKQRKDSLQEFDKAGREDLVHKLQGEIAIVEHYMPEQLSEEELSAIVQQTITEVNASSKADMGKVMGALMPKVKGKADGSLVNKLVQQHL 146          
BLAST of EWM28987.1 vs. NCBI_GenBank
Match: gi|521071529|ref|WP_020403480.1| (hypothetical protein [Gracilimonas tropica])

HSP 1 Score: 120.168 bits (300), Expect = 2.740e-31
Identity = 68/151 (45.03%), Postives = 96/151 (63.58%), Query Frame = 0
Query:   47 SIYEDVNTAVKQAMKDKDKEKLSALRNIKSAL--GNALKEEGAAETLPDEKAILILTKLRKQRQESIEMFIKGNRDDMVQAEKAELAILETYLPQLADEATTREWVSAAIQETGASAKSDMGKVMGVMMKRYKGKTDNKLVSKLVGEMLGA 195
            +I E + + +K+AMK K+++KL  LR++K+ L      + +G    L DE+A+ +L K  KQR+ESIE F +G R+D+   EK ELAI+E YLP++ DE   R+ V   I   GAS   D+GKVMG +M + KGK D  LVSK+V E LG 
Sbjct:    2 TIQEQIISDIKEAMKAKEQDKLRVLRSLKAKLMEKEISERKGGEAKLTDEQAVEVLMKAAKQRKESIEQFEEGGRNDLADNEKKELAIIEAYLPEMMDEEDVRKVVKEKIAAVGASGMQDIGKVMGPLMGQLKGKADGSLVSKVVKEELGG 152          
BLAST of EWM28987.1 vs. NCBI_GenBank
Match: gi|1190746229|emb|SHE10393.1| (glutamyl-tRNA(Gln) amidotransferase subunit E [Chlamydia abortus])

HSP 1 Score: 120.168 bits (300), Expect = 2.914e-31
Identity = 65/148 (43.92%), Postives = 99/148 (66.89%), Query Frame = 0
Query:   47 SIYEDVNTAVKQAMKDKDKEKLSALRNIKSALGNALKEEGAAETLPDEKAILILTKLRKQRQESIEMFIKGNRDDMVQAEKAELAILETYLPQLADEATTREWVSAAIQETGASAKSDMGKVMGVMMKRYKGKTDNKLVSKLVGEMLG 194
            S+ + +N  +KQAMK +DK +LS +R I+SA+ N   E     +L D + + I+++  KQR++S++ F K  R+D+ QA KAE+A++  YLPQ   E   R  V   IQETGAS+K++MGKVMG +M + KG+ D KLV++LV ++L 
Sbjct:    2 SLSDRLNEDMKQAMKSQDKFRLSVIRMIRSAIKNI--EIDQRRSLDDNEVLDIISREIKQRKDSLQEFEKAGREDLAQAAKAEIAVIAEYLPQQLTEEEVRVLVQQTIQETGASSKAEMGKVMGALMPKVKGRADGKLVNQLVQQLLN 147          
The following BLAST results are available for this feature:
BLAST of EWM28987.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111482|gb|EWM28987.1|1.317e-140100.00hypothetical protein Naga_100501g4 [Nannochloropsi... [more]
gi|553194450|ref|XP_005855957.1|1.363e-9099.26hypothetical protein NGA_0547000 [Nannochloropsis ... [more]
gi|299117470|emb|CBN73973.1|7.767e-4047.71GatB/YqeY [Ectocarpus siliculosus][more]
gi|1189387075|gb|OSX74155.1|1.635e-3648.32hypothetical protein BU14_0306s0033 [Porphyra umbi... [more]
gi|1084665466|gb|OGP13484.1|7.028e-3445.95aspartyl-tRNA amidotransferase [Deltaproteobacteri... [more]
gi|1084753239|gb|OGP95236.1|1.444e-3245.64aspartyl-tRNA amidotransferase [Deltaproteobacteri... [more]
gi|494769541|ref|WP_007504949.1|1.208e-3144.59hypothetical protein [Caldalkalibacillus thermarum... [more]
gi|1025826308|ref|WP_063560194.1|1.505e-3144.90hypothetical protein [Bacillus horikoshii][more]
gi|521071529|ref|WP_020403480.1|2.740e-3145.03hypothetical protein [Gracilimonas tropica][more]
gi|1190746229|emb|SHE10393.1|2.914e-3143.92glutamyl-tRNA(Gln) amidotransferase subunit E [Chl... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1691rna1691Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications