rna1689, rna1689 (mRNA) Nannochloropsis gaditana

Overview
Namerna1689
Unique Namerna1689
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length246
Alignment locationCM002457.1:1262489..1263865 -

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Properties
Property NameValue
ProductPolyketide cyclase/dehydrase
Orig transcript idgnl|cribi|Naga_100501g6.4125.mrna
Orig protein idgnl|cribi|Naga_100501g6.4125
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1262489..1263865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100501g6gene1626Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1689rna1689-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28988.1cds1685Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1689 ID=rna1689|Name=rna1689|organism=Nannochloropsis gaditana|type=mRNA|length=246bp
ATGCCCGTGGACAGAATGATGAAAAAGACCTCAACACCTCATCAAGCATG
GGGAGGGGCCAAGCGTGCCAAGGCATTTTACGCGGCTGAGAAGCAGGATC
AGAAAAAAGACGGGACTGAGGAATCAAGCATCCAAACAAAGCTCGCCCAC
CTCATGTCACCGAAGGCGGGAAGGGACAGTCGCACAGGATGTGAATTCGA
AAGGAAAACTACCAGAGGAGCGAGGCGAGGTGCCCAAGGTGGCTAG
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protein sequence of rna1689

>rna1689-protein ID=rna1689-protein|Name=rna1689|organism=Nannochloropsis gaditana|type=polypeptide|length=234bp
MIAPRPSLSVAVLLLLLLPLLLPTVLLGASTDKPQGHNGLVKPFKPGPPS
IRLKKSEVEKLRKGEAVKQQLSSGSGGRGLVIQDVEAPPEVVWGRIMDFP
AYTRMVPRVSLCENYRVQENYLQGLKEIFTRMRLTVMGFNVEYFIHHKYF
PKLNTVVWTLDYNRESDLDDSVGYWHVIPHPDPDREHWSRVYYSIDMRLK
SWMPSFVKNVLKNQVGRAGGTEKREGGRKGERER
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mRNA from alignment at CM002457.1:1262489..1263865-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1689 ID=rna1689|Name=rna1689|organism=Nannochloropsis gaditana|type=mRNA|length=1377bp|location=Sequence derived from alignment at CM002457.1:1262489..1263865- (Nannochloropsis gaditana)
CAGGACAAAGGAAATTGACACCGGCATGTGCGCCTTCTGTGTATAATATG
GAGAATTTCCATCGACAAGTGTTGTGCGTGAAGGCCTCGAAGGGAAGAAG
AGGACACCTGGCCGCTGCAGTGACGCGTAAAAAGTCGATCTTTCGCGTGT
CACACGGCAAACACCCTTTTCTTATCAAATGACACCCTGAGACGTCGCCT
CGCCCTTTTTTTGCGGTGTTATGTGAGATGTTGGTCAAACGGAATGCCAA
CGTTTGTTCTTTCATCCACATTCTTACTTGGCTTTGACCTGGTGTTCGTT
CCGACTCGCACACATTTCCAGAGCAGGAGGGACACCGTGCTTCGTCTATC
AAATTTCCTTCCTTGCTTGCCCCCCCTTGAGAGATATCTTCTTCGTCTCT
TCTCCCTCTAAATTCCCTCCATAGCCATCAGCTTATGATTGCACCGCGGC
CATCGCTTTCCGTCGCCGTCCTCCTCCTGTTGCTCCTCCCTCTCCTCCTC
CCCACCGTCCTCCTGGGCGCTTCTACCGATAAACCCCAGGGACATAACGG
TCTTGTCAAGCCTTTCAAGCCTGGACCGCCGAGCATCCGCCTCAAGAAAA
GCGAGGTCGAGAAACTTCGAAAAGGCGAGGCCGTGAAACAGCAGCTGTCC
TCCGGATCGGGGGGGCGGGGCCTGGTGATTCAAGACGTAGAAGCCCCTCC
CGAGGTTGTCTGGGGCAGAATCATGGACTTCCCTGCCTACACCCGCATGG
TTCCACGCGTCAGTCTCTGCGAGAATTACAGGGTTCAAGAGAATTACCTG
CAGGGCCTGAAGGAGATATTCACCCGGATGCGCCTGACTGTGATGGGCTT
CAATGTCGAGTATTTCATCCACCATAAATATTTCCCGAAATTGAACACGG
TGGTGTGGACGCTTGACTACAACCGAGAGGTGTGCACTCTTGATCTTTGC
CTCCCTCTCCTTTTGTGCTTCCCCCTTGAGCCGGAAATTTAAGCTTTAAT
GCTCCCTGACCCCCCCCGTCCTCCCTCCCCCCCTCCCTCCCCACCTCCTT
CCTCCCCCCCTCCCTCAGAGCGACCTGGACGACTCAGTGGGCTATTGGCA
CGTGATTCCCCATCCTGACCCCGACAGAGAACATTGGTCGCGCGTGTACT
ATTCCATAGACATGCGGCTCAAGTCCTGGATGCCTTCCTTCGTGAAGAAC
GTCTTGAAGAATCAGGTGGGCCGGGCAGGAGGAACGGAAAAGAGGGAGGG
AGGGAGGAAAGGAGAGAGGGAGAGATAGGGGGAGGCTCAAAAAGAGGAGA
GATGGGTACACGGGCCTTCGATTCATGGGGACCCCTGCCGGGTATCTTCA
TCCTCATTCCTCTCCCGCCTCCCTCCC
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Coding sequence (CDS) from alignment at CM002457.1:1262489..1263865-

>rna1689 ID=rna1689|Name=rna1689|organism=Nannochloropsis gaditana|type=CDS|length=1410bp|location=Sequence derived from alignment at CM002457.1:1262489..1263865- (Nannochloropsis gaditana)
AGCGACCTGGACGACTCAGTGGGCTATTGGCACGTGATTCCCCATCCTGA
CCCCGACAGAGAACATTGGTCGCGCGTGTACTATTCCATAGACATGCGGC
TCAAGTCCTGGATGCCTTCCTTCGTGAAGAACGTCTTGAAGAATCAGGTG
GGCCGGGCAGGAGGAACGGAAAAGAGGGAGGGAGGGAGGAAAGGAGAGAG
GGAGAGATAGATGATTGCACCGCGGCCATCGCTTTCCGTCGCCGTCCTCC
TCCTGTTGCTCCTCCCTCTCCTCCTCCCCACCGTCCTCCTGGGCGCTTCT
ACCGATAAACCCCAGGGACATAACGGTCTTGTCAAGCCTTTCAAGCCTGG
ACCGCCGAGCATCCGCCTCAAGAAAAGCGAGGTCGAGAAACTTCGAAAAG
GCGAGGCCGTGAAACAGCAGCTGTCCTCCGGATCGGGGGGGCGGGGCCTG
GTGATTCAAGACGTAGAAGCCCCTCCCGAGGTTGTCTGGGGCAGAATCAT
GGACTTCCCTGCCTACACCCGCATGGTTCCACGCGTCAGTCTCTGCGAGA
ATTACAGGGTTCAAGAGAATTACCTGCAGGGCCTGAAGGAGATATTCACC
CGGATGCGCCTGACTGTGATGGGCTTCAATGTCGAGTATTTCATCCACCA
TAAATATTTCCCGAAATTGAACACGGTGGTGTGGACGCTTGACTACAACC
GAGAGAGCGACCTGGACGACTCAGTGGGCTATTGGCACGTGATTCCCCAT
CCTGACCCCGACAGAGAACATTGGTCGCGCGTGTACTATTCCATAGACAT
GCGGCTCAAGTCCTGGATGCCTTCCTTCGTGAAGAACGTCTTGAAGAATC
AGGTGGGCCGGGCAGGAGGAACGGAAAAGAGGGAGGGAGGGAGGAAAGGA
GAGAGGGAGAGATAGATGATTGCACCGCGGCCATCGCTTTCCGTCGCCGT
CCTCCTCCTGTTGCTCCTCCCTCTCCTCCTCCCCACCGTCCTCCTGGGCG
CTTCTACCGATAAACCCCAGGGACATAACGGTCTTGTCAAGCCTTTCAAG
CCTGGACCGCCGAGCATCCGCCTCAAGAAAAGCGAGGTCGAGAAACTTCG
AAAAGGCGAGGCCGTGAAACAGCAGCTGTCCTCCGGATCGGGGGGGCGGG
GCCTGGTGATTCAAGACGTAGAAGCCCCTCCCGAGGTTGTCTGGGGCAGA
ATCATGGACTTCCCTGCCTACACCCGCATGGTTCCACGCGTCAGTCTCTG
CGAGAATTACAGGGTTCAAGAGAATTACCTGCAGGGCCTGAAGGAGATAT
TCACCCGGATGCGCCTGACTGTGATGGGCTTCAATGTCGAGTATTTCATC
CACCATAAATATTTCCCGAAATTGAACACGGTGGTGTGGACGCTTGACTA
CAACCGAGAG
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Synonyms
Publications