EWM28988.1, cds1685 (CDS) Nannochloropsis gaditana

Overview
NameEWM28988.1
Unique Namecds1685
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1262937..1263431 -
Alignment locationCM002457.1:1262588..1262797 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28988.1
ProductPolyketide cyclase/dehydrase
Orig transcript idgnl|cribi|Naga_100501g6.4125.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1262937..1263431 -
CM002457.1supercontigCM002457.1:1262588..1262797 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR023393START-like_dom
IPR005031Polyket_cyc
Homology
BLAST of EWM28988.1 vs. NCBI_GenBank
Match: gi|585111483|gb|EWM28988.1| (Polyketide cyclase/dehydrase [Nannochloropsis gaditana])

HSP 1 Score: 479.559 bits (1233), Expect = 3.453e-171
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0
Query:    1 MIAPRPSLSVAVLLLLLLPLLLPTVLLGASTDKPQGHNGLVKPFKPGPPSIRLKKSEVEKLRKGEAVKQQLSSGSGGRGLVIQDVEAPPEVVWGRIMDFPAYTRMVPRVSLCENYRVQENYLQGLKEIFTRMRLTVMGFNVEYFIHHKYFPKLNTVVWTLDYNRESDLDDSVGYWHVIPHPDPDREHWSRVYYSIDMRLKSWMPSFVKNVLKNQVGRAGGTEKREGGRKGERER 234
            MIAPRPSLSVAVLLLLLLPLLLPTVLLGASTDKPQGHNGLVKPFKPGPPSIRLKKSEVEKLRKGEAVKQQLSSGSGGRGLVIQDVEAPPEVVWGRIMDFPAYTRMVPRVSLCENYRVQENYLQGLKEIFTRMRLTVMGFNVEYFIHHKYFPKLNTVVWTLDYNRESDLDDSVGYWHVIPHPDPDREHWSRVYYSIDMRLKSWMPSFVKNVLKNQVGRAGGTEKREGGRKGERER
Sbjct:    1 MIAPRPSLSVAVLLLLLLPLLLPTVLLGASTDKPQGHNGLVKPFKPGPPSIRLKKSEVEKLRKGEAVKQQLSSGSGGRGLVIQDVEAPPEVVWGRIMDFPAYTRMVPRVSLCENYRVQENYLQGLKEIFTRMRLTVMGFNVEYFIHHKYFPKLNTVVWTLDYNRESDLDDSVGYWHVIPHPDPDREHWSRVYYSIDMRLKSWMPSFVKNVLKNQVGRAGGTEKREGGRKGERER 234          
BLAST of EWM28988.1 vs. NCBI_GenBank
Match: gi|299117339|emb|CBN75295.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 184.882 bits (468), Expect = 8.943e-54
Identity = 95/224 (42.41%), Postives = 127/224 (56.70%), Query Frame = 0
Query:   10 VAVLLLLLLPLLLPTVLLGASTDKPQGHNGLVKPFKPGPPSIRLKKSEVEKLRKGEAVKQQL------SSGSGGRGLVIQDVEAPPEVVWGRIMDFPAYTRMVPRVSLCENYRVQENYLQGLKEIFTRMRLTVMGFNVEYFIHHKYFPKLNTVVWTLDYNRESDLDDSVGYWHVIPHPDPDRE-HWSRVYYSIDMRLKSWMPSFVKNVLKNQVGRAGGT-EKRE 225
             A  +     L LP V  G++  +   H G VKP+KPG P I L K +   L  G+ V+  L        G GGR L +QDV AP E VW RI+DF  Y +MVP+V+ C+NY   E    G + I T ++L V G  +  F +H YFP  +++ WTLDY ++S LDDSVG+WHV  HP  D++  WSRVYYS+ +R+ SW+P  V   L  +  R   T  KRE
Sbjct:   22 AAATMGAACMLFLPGVAQGSAAAEAHPHQGKVKPYKPGMPDIVLTKKQRTDLDGGDLVQDMLKGETDEDGGKGGRALAVQDVNAPAEYVWDRILDFGNYNKMVPKVTECKNYET-ETLRNGTEIIKTNLKLNVFGVKLNSFFYHTYFPSKSSMTWTLDYTKKSTLDDSVGFWHVATHPSQDKQADWSRVYYSVQLRIPSWIPGIVIGYLNKKAIREATTWVKRE 244          
BLAST of EWM28988.1 vs. NCBI_GenBank
Match: gi|585111140|gb|EWM28717.1| (polyketide cyclase/dehydrase [Nannochloropsis gaditana])

HSP 1 Score: 179.489 bits (454), Expect = 3.110e-51
Identity = 86/213 (40.38%), Postives = 134/213 (62.91%), Query Frame = 0
Query:    6 PSLSVAVLLLLLLPLLLPTVLLGASTDKPQGHNGLVKPFKPGPPSIRLKKSEVEKLRKGEAVKQQLSSG--SGGRGLVIQDVEAPPEVVWGRIMDFPAYTRMVPRVSLCENYRVQENYLQGLKEIFTRMRLTVMGFNVEYFIHHKYFPKLNTVVWTLDYNRESDLDDSVGYWHVIP-HPDPDREHWSRVYYSIDMRLKSWMPSFVKNVLKNQV 215
            P   +A++  LL  ++ P     A+   P  H G+++ ++   P + L  + VE+L +G  VK+Q+ +   +GGRG+V+QDV AP  VV GRI+DF  Y +MVP V+ C NY  +   + G  E+ TR  L+++GF +EYF+ H Y P + T+ WTLDY+R+SDL+D+ GYW V+P   + +   WSRV+YS+D+R+ +W+P  V N+L  Q 
Sbjct:    3 PRTRLALISALLGIIVHPFPGEAANPKLPHTHRGMLEKYELKVPRLALDMAAVERLERGYPVKKQIQAAGRAGGRGIVVQDVHAPASVVMGRILDFDNYNKMVPNVAQCGNY-AKRKLMHGDVELRTRYVLSIVGFKLEYFVRHLYRPSIRTLTWTLDYDRQSDLEDTAGYWSVVPLDKEGNARDWSRVFYSVDLRIPAWVPQLVVNILNTQA 214          
BLAST of EWM28988.1 vs. NCBI_GenBank
Match: gi|224000505|ref|XP_002289925.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220975133|gb|EED93462.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 167.933 bits (424), Expect = 4.495e-47
Identity = 82/211 (38.86%), Postives = 129/211 (61.14%), Query Frame = 0
Query:   14 LLLLLPLLLPTVLLGASTDKPQGHNGLVKPFKPGPPSIRLKKSEVEKLRKGEAVKQQLSSGS-GGRGLVIQDVEAPPEVVWGRIMDFPAYTRMVPRVSLCENYRV-------QENYLQGLKEIFTRMRLTVMGFNVEYFI-HHKYFPKLNTVVWTLDYNRESDLDDSVGYWHVIPHPDPDREHWSRVYYSIDMRLKSWMPSFVKNVLKNQV 215
             +L + LL       ++ +KP  H G V+PF+PG P I+L    +  L+ G+  + Q+ SGS GGRGLV+QDV+AP  +VW RI+D+  Y+ MVP+    +NY++         N+L+  KEI+TRM++      +E+F+ H  Y     ++ WTLDY +ESD DDS GYW ++PHP+ D E  +R+YYS+ + +  W+P FV + + ++ 
Sbjct:   10 CVLTIALLCTPYANASNFNKPHSHTGKVEPFQPGDPKIKLDSKAMSILKAGKPYQTQVQSGSAGGRGLVVQDVDAPTSIVWERILDYDNYSNMVPKTIESKNYKIVPHKPTKANNFLE--KEIYTRMKVGFPMLKLEFFVRHFLYIQHHKSLTWTLDYTKESDFDDSCGYWFILPHPN-DPEEKTRLYYSVQVGMFDWVPKFVVDFMSSKA 217          
BLAST of EWM28988.1 vs. NCBI_GenBank
Match: gi|397613998|gb|EJK62537.1| (hypothetical protein THAOC_16847 [Thalassiosira oceanica])

HSP 1 Score: 166.777 bits (421), Expect = 3.463e-45
Identity = 80/209 (38.28%), Postives = 129/209 (61.72%), Query Frame = 0
Query:   17 LLPLLLPTVLLGASTDKPQGHNGLVKPFKPGPPSIRLKKSEVEKLRKGEAVKQQL--SSGSGGRGLVIQDVEAPPEVVWGRIMDFPAYTRMVPRVSLCENYRV-------QENYLQGLKEIFTRMRLTVMGFNVEYFIHH-KYFPKLNTVVWTLDYNRESDLDDSVGYWHVIPHPDPDREHWSRVYYSIDMRLKSWMPSFVKNVLKNQV 215
             L + L      ++ DKP  H G + PF+PG P ++L       LR G+  + Q+  S G+GGRGLV+QDV+AP  +VW RI+D+  Y  MVP+ +  +NY++         N+L+  KEI+TRM++      +E+F+ H  Y    N++ WTLDY++ESD DDS+GYW+++PHPD D +  +R++YS+ + +  W+P FV + + ++ 
Sbjct:  184 FLVITLTGWASASNFDKPHAHKGKLVPFQPGDPKVKLDGKAKNILRSGKPYQTQVQTSDGAGGRGLVVQDVDAPTSIVWERILDYDNYANMVPKTAESKNYKIVPHKPTKANNFLE--KEIYTRMKVGFPMLKLEFFVRHFLYLQHHNSLTWTLDYSKESDFDDSMGYWYIVPHPD-DPDEKTRLFYSVGVSMFDWVPKFVVDFMSSKA 389          
BLAST of EWM28988.1 vs. NCBI_GenBank
Match: gi|219116186|ref|XP_002178888.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409655|gb|EEC49586.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 144.436 bits (363), Expect = 9.823e-39
Identity = 76/211 (36.02%), Postives = 123/211 (58.29%), Query Frame = 0
Query:    5 RPSLSVAVLLLLLLPLLLPTVLLGASTDKPQGHNGLVKPFKPGPPSIRLKKSEVEKLRKGEAVKQQLSSGSG---GRGLVIQDVEAPPEVVWGRIMDFPAYTRMVPRVSLCENYRVQENYLQGLKEIFTRMRLTVM-GFNVEYFIHHKYFPKLNTVVWTLDYNRESDLDDSVGYWHVIPHPDPDREHWSRVYYSIDMRLKSWMPSFVKNVL 211
            R +L+++  LL  L           + + P  H+GL+K  +PGP  I L  ++  +L +G +V +Q    +G   G  L +QD++AP   VW +I+D  AY   VP+VS C+NY  Q+N+  G   + TRM L VM G++ E + +H+Y P+ +++VW+LDY + SD DD  G+WHV  H  P +   +RV+YS D+++K  +P  + N +
Sbjct:    6 RSTLALSFWLLCAL-----ATAKKPNRNAPHAHSGLLKAHQPGPFPIVLSNADEAELNRGNSVMKQTMPAAGEEAGTVLCVQDIDAPMPAVWNQILDLGAYKGKVPKVSACDNYICQKNH-DGTFTVKTRMVLGVMPGYSYENYYNHRYLPEDSSMVWSLDYEKTSDFDDVAGHWHVAEH--PSKPSHTRVFYSCDVQMKGNLPKPIINYI 208          
BLAST of EWM28988.1 vs. NCBI_GenBank
Match: gi|676379545|ref|XP_009033051.1| (hypothetical protein AURANDRAFT_61214 [Aureococcus anophagefferens] >gi|323456075|gb|EGB11942.1| hypothetical protein AURANDRAFT_61214 [Aureococcus anophagefferens])

HSP 1 Score: 144.05 bits (362), Expect = 8.234e-38
Identity = 71/197 (36.04%), Postives = 111/197 (56.35%), Query Frame = 0
Query:   24 TVLLGASTDKPQGHNGLVKPFKP----GPPSIRLKKSEVEKLRKGEAVKQQLSSGSGGRGLVIQDVEAPPEVVWGRIMDFPAYTRMVPRVSLCENYRVQENYLQGLKEIFTRMRLTVM-GFNVEYFIHHKYFPKLNTVVWTLDYNRESDLDDSVGYWHVIPHPDPDREHWSRVYYSIDMRLKSWMPSFVKNVLKNQV 215
              + G    KP  H     PF P     PP   LK +++ KL  GE +  Q S  + G G  ++D+ APP+VVW +++ F  Y   VP+V  C NY V ++  + + +  TR  + V+ G ++EY++ H + P+ N + WTLDY ++SD+DD  G W V+PH  P+R  WSRV Y+ D++L+   P FV ++L  + 
Sbjct:   13 AAVFGGDPTKPHFHGPTRTPFDPKDDIAPP---LKSADLAKLADGEIITVQSSDATSGGGCAVEDIRAPPDVVWSQLLTFETYPDKVPKVRECANYEVTKSSDEEVMK--TRYGVKVVPGLSMEYYLRHVFHPRKNALTWTLDYEKQSDIDDCHGIWRVVPH--PERPEWSRVEYAADLKLRGGCPQFVIDILTKKA 202          
BLAST of EWM28988.1 vs. NCBI_GenBank
Match: gi|551619251|ref|XP_005790214.1| (hypothetical protein EMIHUDRAFT_440256, partial [Emiliania huxleyi CCMP1516] >gi|485643815|gb|EOD37785.1| hypothetical protein EMIHUDRAFT_440256, partial [Emiliania huxleyi CCMP1516])

HSP 1 Score: 140.198 bits (352), Expect = 2.721e-36
Identity = 81/199 (40.70%), Postives = 117/199 (58.79%), Query Frame = 0
Query:   20 LLLPTVLLGASTDKPQGHNGLVKPFKPGPPSIRLKKSEVEKLRKGEAVKQQLSSGSGG--RGLVIQDVEAPPEVVWGRIMDFPAYTRMVPRVSLCENY-RVQENYLQGLKEIFTRMRLTVMGFNVEYFIHHKYFPKLNTVVWTLDYNRESDLDDSVGYWHVIPHPDPDREHWSRVYYSIDMRLKSWMPSFVKNVLKNQV 215
            L L   +  A+ ++P  HNG +  ++ GPPS+ L +S+ E+L  G+ V Q + +G  G  R L++QD+ APP VV  RIMD   Y +MV  V+    Y R QE    GL+ I T   + V+   + YF+ H+Y P+   + + LDY+R SD+DDSVGYW+V   P   R   SRVYYS + +L+ W+PS V NVL  + 
Sbjct:    2 LTLSLAVAAAAENEPHYHNGKLTRYEIGPPSVLLSRSDEERLSSGKPVMQAMETGIVGARRLLMVQDIAAPPNVVMDRIMDLAHYDKMVDGVTRNVEYNREQEG---GLQRIKTTYDIAVLHMKMRYFMEHEYDPEKRCMTFHLDYSRRSDIDDSVGYWYV--EPGAGRAS-SRVYYSCECKLRGWVPSPVYNVLTKEA 194          
BLAST of EWM28988.1 vs. NCBI_GenBank
Match: gi|1084771934|gb|OGQ11771.1| (hypothetical protein A2138_20165 [Deltaproteobacteria bacterium RBG_16_71_12])

HSP 1 Score: 137.117 bits (344), Expect = 3.273e-36
Identity = 71/186 (38.17%), Postives = 107/186 (57.53%), Query Frame = 0
Query:   30 STDKPQGHNGLVKPFKPGPPSIRLKKSEVEKLRKGEAVKQQLSSGSGGRGLVIQDVEAPPEVVWGRIMDFPAYTRMVPRVSLCENYRVQENYLQGLKEIFTRMRLTVMGFNVEYFIHHKYFPKLNTVVWTLDYNRESDLDDSVGYWHVIPHP-DPDREHWSRVYYSIDMRLKSWMPSFVKNVLKNQ 214
              +KP GH+G++KP+   PP + L   E   L +G++V +QL   +GGRG+ I  V+A P+ VW  I DF +Y + +  V  CE Y+          +I    ++      ++YFI H Y        WTLDYNR+SDLDDSVG+W V P+  DP R   S V YS+D+++K W+P F++ +L ++
Sbjct:   40 DVNKPHGHHGVLKPYARPPPPLVLTDKEKATLDQGKSVMRQLEGEAGGRGMAIFRVDAAPDTVWAIINDFHSYPKWIDEVKKCEIYKKDGG------KIDVAFKIASFPVTIDYFIAHDYDMVNRWGTWTLDYNRDSDLDDSVGFWRVTPYQGDPAR---SLVEYSVDIKIKGWVPDFIRGLLVDK 216          
BLAST of EWM28988.1 vs. NCBI_GenBank
Match: gi|1200534937|gb|OUW47345.1| (hypothetical protein CBD47_04735 [Synechococcus sp. TMED187])

HSP 1 Score: 133.265 bits (334), Expect = 5.033e-34
Identity = 68/194 (35.05%), Postives = 111/194 (57.22%), Query Frame = 0
Query:   28 GASTDKPQGHNGLVKPFKPGPPS---IRLKKSEVEKLRKGEAVKQQLSSGSG-GRGLVIQDVEAPPEVVWGRIMDFPAYTRMVPRVSLCENYRVQENYLQGLKEIFTRMRLTVMGFNVEYFIHHKYFPKLNTVVWTLDYNRESDLDDSVGYWHVIPHPDPDREHWSRVYYSIDMRLKSWMPSFVKNVLKNQVGR 217
            GA  ++P  H G +  ++  PPS   + +   +  +LR G+ + Q +S  +G  R   IQDV AP +VVW +I+D P Y + V  V  CE YR + +   G++ +F + ++    F +EYF+ H++  K N + + LDY R+S+L D+VGYW+V    D     W RV+YS D ++ +W+P F+K+ L N   +
Sbjct:   44 GADPNRPHPHQGTLTKYERKPPSEYGLSVAGVDATRLRSGKPLLQLISLPNGFKRTASIQDVHAPADVVWSKILDLPNYDKYVDGVVSCEVYRREAS--GGVELVFAKYKIRAAAFTLEYFMQHEFERKANAMTFQLDYTRKSELADTVGYWYVEELDD----GWCRVFYSTDSQIPAWIPGFMKDALVNLAAK 231          
The following BLAST results are available for this feature:
BLAST of EWM28988.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111483|gb|EWM28988.1|3.453e-171100.00Polyketide cyclase/dehydrase [Nannochloropsis gadi... [more]
gi|299117339|emb|CBN75295.1|8.943e-5442.41conserved unknown protein [Ectocarpus siliculosus][more]
gi|585111140|gb|EWM28717.1|3.110e-5140.38polyketide cyclase/dehydrase [Nannochloropsis gadi... [more]
gi|224000505|ref|XP_002289925.1|4.495e-4738.86predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|397613998|gb|EJK62537.1|3.463e-4538.28hypothetical protein THAOC_16847 [Thalassiosira oc... [more]
gi|219116186|ref|XP_002178888.1|9.823e-3936.02predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|676379545|ref|XP_009033051.1|8.234e-3836.04hypothetical protein AURANDRAFT_61214 [Aureococcus... [more]
gi|551619251|ref|XP_005790214.1|2.721e-3640.70hypothetical protein EMIHUDRAFT_440256, partial [E... [more]
gi|1084771934|gb|OGQ11771.1|3.273e-3638.17hypothetical protein A2138_20165 [Deltaproteobacte... [more]
gi|1200534937|gb|OUW47345.1|5.033e-3435.05hypothetical protein CBD47_04735 [Synechococcus sp... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1689rna1689Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications