EWM28988.1, cds1685 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28988.1 vs. NCBI_GenBank
Match: gi|585111483|gb|EWM28988.1| (Polyketide cyclase/dehydrase [Nannochloropsis gaditana]) HSP 1 Score: 479.559 bits (1233), Expect = 3.453e-171 Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0
Query: 1 MIAPRPSLSVAVLLLLLLPLLLPTVLLGASTDKPQGHNGLVKPFKPGPPSIRLKKSEVEKLRKGEAVKQQLSSGSGGRGLVIQDVEAPPEVVWGRIMDFPAYTRMVPRVSLCENYRVQENYLQGLKEIFTRMRLTVMGFNVEYFIHHKYFPKLNTVVWTLDYNRESDLDDSVGYWHVIPHPDPDREHWSRVYYSIDMRLKSWMPSFVKNVLKNQVGRAGGTEKREGGRKGERER 234
MIAPRPSLSVAVLLLLLLPLLLPTVLLGASTDKPQGHNGLVKPFKPGPPSIRLKKSEVEKLRKGEAVKQQLSSGSGGRGLVIQDVEAPPEVVWGRIMDFPAYTRMVPRVSLCENYRVQENYLQGLKEIFTRMRLTVMGFNVEYFIHHKYFPKLNTVVWTLDYNRESDLDDSVGYWHVIPHPDPDREHWSRVYYSIDMRLKSWMPSFVKNVLKNQVGRAGGTEKREGGRKGERER
Sbjct: 1 MIAPRPSLSVAVLLLLLLPLLLPTVLLGASTDKPQGHNGLVKPFKPGPPSIRLKKSEVEKLRKGEAVKQQLSSGSGGRGLVIQDVEAPPEVVWGRIMDFPAYTRMVPRVSLCENYRVQENYLQGLKEIFTRMRLTVMGFNVEYFIHHKYFPKLNTVVWTLDYNRESDLDDSVGYWHVIPHPDPDREHWSRVYYSIDMRLKSWMPSFVKNVLKNQVGRAGGTEKREGGRKGERER 234
BLAST of EWM28988.1 vs. NCBI_GenBank
Match: gi|299117339|emb|CBN75295.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 184.882 bits (468), Expect = 8.943e-54 Identity = 95/224 (42.41%), Postives = 127/224 (56.70%), Query Frame = 0
Query: 10 VAVLLLLLLPLLLPTVLLGASTDKPQGHNGLVKPFKPGPPSIRLKKSEVEKLRKGEAVKQQL------SSGSGGRGLVIQDVEAPPEVVWGRIMDFPAYTRMVPRVSLCENYRVQENYLQGLKEIFTRMRLTVMGFNVEYFIHHKYFPKLNTVVWTLDYNRESDLDDSVGYWHVIPHPDPDRE-HWSRVYYSIDMRLKSWMPSFVKNVLKNQVGRAGGT-EKRE 225
A + L LP V G++ + H G VKP+KPG P I L K + L G+ V+ L G GGR L +QDV AP E VW RI+DF Y +MVP+V+ C+NY E G + I T ++L V G + F +H YFP +++ WTLDY ++S LDDSVG+WHV HP D++ WSRVYYS+ +R+ SW+P V L + R T KRE
Sbjct: 22 AAATMGAACMLFLPGVAQGSAAAEAHPHQGKVKPYKPGMPDIVLTKKQRTDLDGGDLVQDMLKGETDEDGGKGGRALAVQDVNAPAEYVWDRILDFGNYNKMVPKVTECKNYET-ETLRNGTEIIKTNLKLNVFGVKLNSFFYHTYFPSKSSMTWTLDYTKKSTLDDSVGFWHVATHPSQDKQADWSRVYYSVQLRIPSWIPGIVIGYLNKKAIREATTWVKRE 244
BLAST of EWM28988.1 vs. NCBI_GenBank
Match: gi|585111140|gb|EWM28717.1| (polyketide cyclase/dehydrase [Nannochloropsis gaditana]) HSP 1 Score: 179.489 bits (454), Expect = 3.110e-51 Identity = 86/213 (40.38%), Postives = 134/213 (62.91%), Query Frame = 0
Query: 6 PSLSVAVLLLLLLPLLLPTVLLGASTDKPQGHNGLVKPFKPGPPSIRLKKSEVEKLRKGEAVKQQLSSG--SGGRGLVIQDVEAPPEVVWGRIMDFPAYTRMVPRVSLCENYRVQENYLQGLKEIFTRMRLTVMGFNVEYFIHHKYFPKLNTVVWTLDYNRESDLDDSVGYWHVIP-HPDPDREHWSRVYYSIDMRLKSWMPSFVKNVLKNQV 215
P +A++ LL ++ P A+ P H G+++ ++ P + L + VE+L +G VK+Q+ + +GGRG+V+QDV AP VV GRI+DF Y +MVP V+ C NY + + G E+ TR L+++GF +EYF+ H Y P + T+ WTLDY+R+SDL+D+ GYW V+P + + WSRV+YS+D+R+ +W+P V N+L Q
Sbjct: 3 PRTRLALISALLGIIVHPFPGEAANPKLPHTHRGMLEKYELKVPRLALDMAAVERLERGYPVKKQIQAAGRAGGRGIVVQDVHAPASVVMGRILDFDNYNKMVPNVAQCGNY-AKRKLMHGDVELRTRYVLSIVGFKLEYFVRHLYRPSIRTLTWTLDYDRQSDLEDTAGYWSVVPLDKEGNARDWSRVFYSVDLRIPAWVPQLVVNILNTQA 214
BLAST of EWM28988.1 vs. NCBI_GenBank
Match: gi|224000505|ref|XP_002289925.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220975133|gb|EED93462.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 167.933 bits (424), Expect = 4.495e-47 Identity = 82/211 (38.86%), Postives = 129/211 (61.14%), Query Frame = 0
Query: 14 LLLLLPLLLPTVLLGASTDKPQGHNGLVKPFKPGPPSIRLKKSEVEKLRKGEAVKQQLSSGS-GGRGLVIQDVEAPPEVVWGRIMDFPAYTRMVPRVSLCENYRV-------QENYLQGLKEIFTRMRLTVMGFNVEYFI-HHKYFPKLNTVVWTLDYNRESDLDDSVGYWHVIPHPDPDREHWSRVYYSIDMRLKSWMPSFVKNVLKNQV 215
+L + LL ++ +KP H G V+PF+PG P I+L + L+ G+ + Q+ SGS GGRGLV+QDV+AP +VW RI+D+ Y+ MVP+ +NY++ N+L+ KEI+TRM++ +E+F+ H Y ++ WTLDY +ESD DDS GYW ++PHP+ D E +R+YYS+ + + W+P FV + + ++
Sbjct: 10 CVLTIALLCTPYANASNFNKPHSHTGKVEPFQPGDPKIKLDSKAMSILKAGKPYQTQVQSGSAGGRGLVVQDVDAPTSIVWERILDYDNYSNMVPKTIESKNYKIVPHKPTKANNFLE--KEIYTRMKVGFPMLKLEFFVRHFLYIQHHKSLTWTLDYTKESDFDDSCGYWFILPHPN-DPEEKTRLYYSVQVGMFDWVPKFVVDFMSSKA 217
BLAST of EWM28988.1 vs. NCBI_GenBank
Match: gi|397613998|gb|EJK62537.1| (hypothetical protein THAOC_16847 [Thalassiosira oceanica]) HSP 1 Score: 166.777 bits (421), Expect = 3.463e-45 Identity = 80/209 (38.28%), Postives = 129/209 (61.72%), Query Frame = 0
Query: 17 LLPLLLPTVLLGASTDKPQGHNGLVKPFKPGPPSIRLKKSEVEKLRKGEAVKQQL--SSGSGGRGLVIQDVEAPPEVVWGRIMDFPAYTRMVPRVSLCENYRV-------QENYLQGLKEIFTRMRLTVMGFNVEYFIHH-KYFPKLNTVVWTLDYNRESDLDDSVGYWHVIPHPDPDREHWSRVYYSIDMRLKSWMPSFVKNVLKNQV 215
L + L ++ DKP H G + PF+PG P ++L LR G+ + Q+ S G+GGRGLV+QDV+AP +VW RI+D+ Y MVP+ + +NY++ N+L+ KEI+TRM++ +E+F+ H Y N++ WTLDY++ESD DDS+GYW+++PHPD D + +R++YS+ + + W+P FV + + ++
Sbjct: 184 FLVITLTGWASASNFDKPHAHKGKLVPFQPGDPKVKLDGKAKNILRSGKPYQTQVQTSDGAGGRGLVVQDVDAPTSIVWERILDYDNYANMVPKTAESKNYKIVPHKPTKANNFLE--KEIYTRMKVGFPMLKLEFFVRHFLYLQHHNSLTWTLDYSKESDFDDSMGYWYIVPHPD-DPDEKTRLFYSVGVSMFDWVPKFVVDFMSSKA 389
BLAST of EWM28988.1 vs. NCBI_GenBank
Match: gi|219116186|ref|XP_002178888.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409655|gb|EEC49586.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 144.436 bits (363), Expect = 9.823e-39 Identity = 76/211 (36.02%), Postives = 123/211 (58.29%), Query Frame = 0
Query: 5 RPSLSVAVLLLLLLPLLLPTVLLGASTDKPQGHNGLVKPFKPGPPSIRLKKSEVEKLRKGEAVKQQLSSGSG---GRGLVIQDVEAPPEVVWGRIMDFPAYTRMVPRVSLCENYRVQENYLQGLKEIFTRMRLTVM-GFNVEYFIHHKYFPKLNTVVWTLDYNRESDLDDSVGYWHVIPHPDPDREHWSRVYYSIDMRLKSWMPSFVKNVL 211
R +L+++ LL L + + P H+GL+K +PGP I L ++ +L +G +V +Q +G G L +QD++AP VW +I+D AY VP+VS C+NY Q+N+ G + TRM L VM G++ E + +H+Y P+ +++VW+LDY + SD DD G+WHV H P + +RV+YS D+++K +P + N +
Sbjct: 6 RSTLALSFWLLCAL-----ATAKKPNRNAPHAHSGLLKAHQPGPFPIVLSNADEAELNRGNSVMKQTMPAAGEEAGTVLCVQDIDAPMPAVWNQILDLGAYKGKVPKVSACDNYICQKNH-DGTFTVKTRMVLGVMPGYSYENYYNHRYLPEDSSMVWSLDYEKTSDFDDVAGHWHVAEH--PSKPSHTRVFYSCDVQMKGNLPKPIINYI 208
BLAST of EWM28988.1 vs. NCBI_GenBank
Match: gi|676379545|ref|XP_009033051.1| (hypothetical protein AURANDRAFT_61214 [Aureococcus anophagefferens] >gi|323456075|gb|EGB11942.1| hypothetical protein AURANDRAFT_61214 [Aureococcus anophagefferens]) HSP 1 Score: 144.05 bits (362), Expect = 8.234e-38 Identity = 71/197 (36.04%), Postives = 111/197 (56.35%), Query Frame = 0
Query: 24 TVLLGASTDKPQGHNGLVKPFKP----GPPSIRLKKSEVEKLRKGEAVKQQLSSGSGGRGLVIQDVEAPPEVVWGRIMDFPAYTRMVPRVSLCENYRVQENYLQGLKEIFTRMRLTVM-GFNVEYFIHHKYFPKLNTVVWTLDYNRESDLDDSVGYWHVIPHPDPDREHWSRVYYSIDMRLKSWMPSFVKNVLKNQV 215
+ G KP H PF P PP LK +++ KL GE + Q S + G G ++D+ APP+VVW +++ F Y VP+V C NY V ++ + + + TR + V+ G ++EY++ H + P+ N + WTLDY ++SD+DD G W V+PH P+R WSRV Y+ D++L+ P FV ++L +
Sbjct: 13 AAVFGGDPTKPHFHGPTRTPFDPKDDIAPP---LKSADLAKLADGEIITVQSSDATSGGGCAVEDIRAPPDVVWSQLLTFETYPDKVPKVRECANYEVTKSSDEEVMK--TRYGVKVVPGLSMEYYLRHVFHPRKNALTWTLDYEKQSDIDDCHGIWRVVPH--PERPEWSRVEYAADLKLRGGCPQFVIDILTKKA 202
BLAST of EWM28988.1 vs. NCBI_GenBank
Match: gi|551619251|ref|XP_005790214.1| (hypothetical protein EMIHUDRAFT_440256, partial [Emiliania huxleyi CCMP1516] >gi|485643815|gb|EOD37785.1| hypothetical protein EMIHUDRAFT_440256, partial [Emiliania huxleyi CCMP1516]) HSP 1 Score: 140.198 bits (352), Expect = 2.721e-36 Identity = 81/199 (40.70%), Postives = 117/199 (58.79%), Query Frame = 0
Query: 20 LLLPTVLLGASTDKPQGHNGLVKPFKPGPPSIRLKKSEVEKLRKGEAVKQQLSSGSGG--RGLVIQDVEAPPEVVWGRIMDFPAYTRMVPRVSLCENY-RVQENYLQGLKEIFTRMRLTVMGFNVEYFIHHKYFPKLNTVVWTLDYNRESDLDDSVGYWHVIPHPDPDREHWSRVYYSIDMRLKSWMPSFVKNVLKNQV 215
L L + A+ ++P HNG + ++ GPPS+ L +S+ E+L G+ V Q + +G G R L++QD+ APP VV RIMD Y +MV V+ Y R QE GL+ I T + V+ + YF+ H+Y P+ + + LDY+R SD+DDSVGYW+V P R SRVYYS + +L+ W+PS V NVL +
Sbjct: 2 LTLSLAVAAAAENEPHYHNGKLTRYEIGPPSVLLSRSDEERLSSGKPVMQAMETGIVGARRLLMVQDIAAPPNVVMDRIMDLAHYDKMVDGVTRNVEYNREQEG---GLQRIKTTYDIAVLHMKMRYFMEHEYDPEKRCMTFHLDYSRRSDIDDSVGYWYV--EPGAGRAS-SRVYYSCECKLRGWVPSPVYNVLTKEA 194
BLAST of EWM28988.1 vs. NCBI_GenBank
Match: gi|1084771934|gb|OGQ11771.1| (hypothetical protein A2138_20165 [Deltaproteobacteria bacterium RBG_16_71_12]) HSP 1 Score: 137.117 bits (344), Expect = 3.273e-36 Identity = 71/186 (38.17%), Postives = 107/186 (57.53%), Query Frame = 0
Query: 30 STDKPQGHNGLVKPFKPGPPSIRLKKSEVEKLRKGEAVKQQLSSGSGGRGLVIQDVEAPPEVVWGRIMDFPAYTRMVPRVSLCENYRVQENYLQGLKEIFTRMRLTVMGFNVEYFIHHKYFPKLNTVVWTLDYNRESDLDDSVGYWHVIPHP-DPDREHWSRVYYSIDMRLKSWMPSFVKNVLKNQ 214
+KP GH+G++KP+ PP + L E L +G++V +QL +GGRG+ I V+A P+ VW I DF +Y + + V CE Y+ +I ++ ++YFI H Y WTLDYNR+SDLDDSVG+W V P+ DP R S V YS+D+++K W+P F++ +L ++
Sbjct: 40 DVNKPHGHHGVLKPYARPPPPLVLTDKEKATLDQGKSVMRQLEGEAGGRGMAIFRVDAAPDTVWAIINDFHSYPKWIDEVKKCEIYKKDGG------KIDVAFKIASFPVTIDYFIAHDYDMVNRWGTWTLDYNRDSDLDDSVGFWRVTPYQGDPAR---SLVEYSVDIKIKGWVPDFIRGLLVDK 216
BLAST of EWM28988.1 vs. NCBI_GenBank
Match: gi|1200534937|gb|OUW47345.1| (hypothetical protein CBD47_04735 [Synechococcus sp. TMED187]) HSP 1 Score: 133.265 bits (334), Expect = 5.033e-34 Identity = 68/194 (35.05%), Postives = 111/194 (57.22%), Query Frame = 0
Query: 28 GASTDKPQGHNGLVKPFKPGPPS---IRLKKSEVEKLRKGEAVKQQLSSGSG-GRGLVIQDVEAPPEVVWGRIMDFPAYTRMVPRVSLCENYRVQENYLQGLKEIFTRMRLTVMGFNVEYFIHHKYFPKLNTVVWTLDYNRESDLDDSVGYWHVIPHPDPDREHWSRVYYSIDMRLKSWMPSFVKNVLKNQVGR 217
GA ++P H G + ++ PPS + + + +LR G+ + Q +S +G R IQDV AP +VVW +I+D P Y + V V CE YR + + G++ +F + ++ F +EYF+ H++ K N + + LDY R+S+L D+VGYW+V D W RV+YS D ++ +W+P F+K+ L N +
Sbjct: 44 GADPNRPHPHQGTLTKYERKPPSEYGLSVAGVDATRLRSGKPLLQLISLPNGFKRTASIQDVHAPADVVWSKILDLPNYDKYVDGVVSCEVYRREAS--GGVELVFAKYKIRAAAFTLEYFMQHEFERKANAMTFQLDYTRKSELADTVGYWYVEELDD----GWCRVFYSTDSQIPAWIPGFMKDALVNLAAK 231 The following BLAST results are available for this feature:
BLAST of EWM28988.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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