rna1687, rna1687 (mRNA) Nannochloropsis gaditana

Overview
Namerna1687
Unique Namerna1687
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length414
Alignment locationCM002457.1:1260276..1261261 +

Link to JBrowse

Properties
Property NameValue
ProductArmadillo-like helical
Orig transcript idgnl|cribi|Naga_100817g2.7274.mrna
Orig protein idgnl|cribi|Naga_100817g2.7274
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1260276..1261261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100817g2gene1624Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1687rna1687-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28989.1cds1683Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1687 ID=rna1687|Name=rna1687|organism=Nannochloropsis gaditana|type=mRNA|length=414bp
ATGTTAGTTGACAAAGTTGAAGTACGTTATCACAATCTGTACGGATTTGA
ATGTCGTGGAATTTTTGCCAAGGAAACAATCAAGGCCGGGGAAATGATAT
GGACGTACAAGGAAGGGACCGAGATCCTCCGCACCTACCACAAGCATCAG
ATCGACGCCTTGCCTCCCTCTCCCGCCAAAGTGAACCTTGTGACGTATTC
TTATATGCTAGATGACGATCTGTACGGTTCAACACCAAATCCTGAAGAGG
ACCCCTCGTACTTCTTCAACCACTCCTGTGCTCCCAATTGCTGGTACAGC
GGAGACAACCTGATCGTGGCCATGCGGGACATCCGCAAGGACGAGCACAT
CGTCTACGACTACGCTATGACCGAGACAGAGGCTTCCCTGCACGCGGGCC
TGGTCTGTTTGTAG
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protein sequence of rna1687

>rna1687-protein ID=rna1687-protein|Name=rna1687|organism=Nannochloropsis gaditana|type=polypeptide|length=194bp
MTTFTTDLSPRPLPSKASSLRLQWYVHPTKLDYRVVLPLFLEGLREVKDP
YRYLAVRGSMDLIASCPSKLMACVPFLLPPLKRALDTRHPLILATSLTVL
QEFILADPSRIGPALVPHYHQLLGASAVINKQTYGNEDRKGEMASSQRRL
CVTDLMNETLTLLEITGGRDAFLHIRYMVPTYDSVLQQGVRSIW
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mRNA from alignment at CM002457.1:1260276..1261261+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1687 ID=rna1687|Name=rna1687|organism=Nannochloropsis gaditana|type=mRNA|length=986bp|location=Sequence derived from alignment at CM002457.1:1260276..1261261+ (Nannochloropsis gaditana)
ATGACAACATTCACAACCGATTTAAGCCCCAGGCCCCTCCCATCAAAGGT
GGAGtcccttcgcctcttcctagaacggaggaagagcgtgTCTTTCGTTA
CCCTAGACAAGTGAATACAAGCGTTTCTCCACCTACCGTAGGTCCGTCTA
TTGTACGTCATCGTCCAGCTGCGCCCCACACGCGAAACGACAAGAACGAG
ACTCCGCGAGATGAGAAGGGCGTTCTGTCCACCAGAATATCAcagcttct
tcctcgcctggATCCCTCACATCACCATTCACCATCATTTCACTCCCGAC
CAAGCGCCGACAAATCTGCGAAAACAAAAGTTTCTTTCGCTCCTCCGGTG
GGTACTAGCCCATTTCGACAAGCCTACGAACGGGGCACTCTCCCGGCCGG
CATCCGGCACCAACGGGAGGCGGCCCATATCACCTCGCTCACCGCCCAGG
CCTCATCTTTGAGGCTTCAATGGTACGTCCACCCCACCAAGTTGGACTAT
CGCGTGGTCTTGCCCCTCTTTTTAGAAGGGTTGCGCGAGGTGAAAGACCC
GTACAGGTACTTGGCTGTGCGGGGAAGCATGGACTTGatcgcctcctgcc
cctccaagCTCATGGCTTGTGtgcccttcctgcttcccccttTGAAACGA
GCCCTCGACACGCGCCATCCGCTAATCCTTGCAACCAGTCTAACCGTTCT
GCAGGAGTTTATTCTGGCGGATCCGAGCCGGATTGGCCCGGCATTAGTCC
CTCATTACCACCAACTATTAGGGGCCTCCGCCGTCATCAACAAGCAGACC
TATGGGAACGAGGACAGAAAAGGGGAGATGGCAAGCTCCCAACGTCGGTT
GTGCGTGACAGATCTCATGAATGAGACACTGACGCTCTTGGAAATCACGG
GCGGAAGAGATGCCTTCCTGCACATTCGTTACATGGTGCCGACATACGAC
TCGGTCTTGCAACAGGGGGTCAGGAGTAtatggtga
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Coding sequence (CDS) from alignment at CM002457.1:1260276..1261261+

>rna1687 ID=rna1687|Name=rna1687|organism=Nannochloropsis gaditana|type=CDS|length=1170bp|location=Sequence derived from alignment at CM002457.1:1260276..1261261+ (Nannochloropsis gaditana)
ATGACAACATTCACAACCGATTTAAGCCCCAGGCCCCTCCCATCAAAGGC
CTCATCTTTGAGGCTTCAATGGTACGTCCACCCCACCAAGTTGGACTATC
GCGTGGTCTTGCCCCTCTTTTTAGAAGGGTTGCGCGAGGTGAAAGACCCG
TACAGGTACTTGGCTGTGCGGGGAAGCATGGACTTGatcgcctcctgccc
ctccaagCTCATGGCTTGTGtgcccttcctgcttcccccttTGAAACGAG
CCCTCGACACGCGCCATCCGCTAATCCTTGCAACCAGTCTAACCGTTCTG
CAGGAGTTTATTCTGGCGGATCCGAGCCGGATTGGCCCGGCATTAGTCCC
TCATTACCACCAACTATTAGGGGCCTCCGCCGTCATCAACAAGCAGACCT
ATGGGAACGAGGACAGAAAAGGGGAGATGGCAAGCTCCCAACGTCGGTTG
TGCGTGACAGATCTCATGAATGAGACACTGACGCTCTTGGAAATCACGGG
CGGAAGAGATGCCTTCCTGCACATTCGTTACATGGTGCCGACATACGACT
CGGTCTTGCAACAGGGGGTCAGGAGTAtatggtgaATGACAACATTCACA
ACCGATTTAAGCCCCAGGCCCCTCCCATCAAAGGCCTCATCTTTGAGGCT
TCAATGGTACGTCCACCCCACCAAGTTGGACTATCGCGTGGTCTTGCCCC
TCTTTTTAGAAGGGTTGCGCGAGGTGAAAGACCCGTACAGGTACTTGGCT
GTGCGGGGAAGCATGGACTTGatcgcctcctgcccctccaagCTCATGGC
TTGTGtgcccttcctgcttcccccttTGAAACGAGCCCTCGACACGCGCC
ATCCGCTAATCCTTGCAACCAGTCTAACCGTTCTGCAGGAGTTTATTCTG
GCGGATCCGAGCCGGATTGGCCCGGCATTAGTCCCTCATTACCACCAACT
ATTAGGGGCCTCCGCCGTCATCAACAAGCAGACCTATGGGAACGAGGACA
GAAAAGGGGAGATGGCAAGCTCCCAACGTCGGTTGTGCGTGACAGATCTC
ATGAATGAGACACTGACGCTCTTGGAAATCACGGGCGGAAGAGATGCCTT
CCTGCACATTCGTTACATGGTGCCGACATACGACTCGGTCTTGCAACAGG
GGGTCAGGAGTAtatggtga
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Synonyms
Publications