EWM28989.1, cds1683 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28989.1 vs. NCBI_GenBank
Match: gi|585111485|gb|EWM28989.1| (Armadillo-like helical [Nannochloropsis gaditana]) HSP 1 Score: 397.897 bits (1021), Expect = 3.101e-140 Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0
Query: 1 MTTFTTDLSPRPLPSKASSLRLQWYVHPTKLDYRVVLPLFLEGLREVKDPYRYLAVRGSMDLIASCPSKLMACVPFLLPPLKRALDTRHPLILATSLTVLQEFILADPSRIGPALVPHYHQLLGASAVINKQTYGNEDRKGEMASSQRRLCVTDLMNETLTLLEITGGRDAFLHIRYMVPTYDSVLQQGVRSIW 194
MTTFTTDLSPRPLPSKASSLRLQWYVHPTKLDYRVVLPLFLEGLREVKDPYRYLAVRGSMDLIASCPSKLMACVPFLLPPLKRALDTRHPLILATSLTVLQEFILADPSRIGPALVPHYHQLLGASAVINKQTYGNEDRKGEMASSQRRLCVTDLMNETLTLLEITGGRDAFLHIRYMVPTYDSVLQQGVRSIW
Sbjct: 1 MTTFTTDLSPRPLPSKASSLRLQWYVHPTKLDYRVVLPLFLEGLREVKDPYRYLAVRGSMDLIASCPSKLMACVPFLLPPLKRALDTRHPLILATSLTVLQEFILADPSRIGPALVPHYHQLLGASAVINKQTYGNEDRKGEMASSQRRLCVTDLMNETLTLLEITGGRDAFLHIRYMVPTYDSVLQQGVRSIW 194
BLAST of EWM28989.1 vs. NCBI_GenBank
Match: gi|291000887|ref|XP_002683010.1| (hypothetical protein NAEGRDRAFT_82851 [Naegleria gruberi] >gi|284096639|gb|EFC50266.1| hypothetical protein NAEGRDRAFT_82851 [Naegleria gruberi]) HSP 1 Score: 148.288 bits (373), Expect = 3.730e-40 Identity = 74/165 (44.85%), Postives = 109/165 (66.06%), Query Frame = 0
Query: 21 RLQWYVHPTKLDYRVVLPLFLEGLREVKDPYRYLAVRGSMDLIASCPSKLMACVPFLLPPLKRALDTRHPLILATSLTVLQEFILADPSRIGPALVPHYHQLLGASAVINKQTYGNEDRKGEMASSQR-RLCVTDLMNETLTLLEITGGRDAFLHIRYMVPTYDS 184
+ W V KLDY LP+F +GLRE ++PYR+LAV+G+ DL+ K++ C+P L+ P+K AL+TR P I+ T L V+Q+ +L++ ++G ALVP+Y Q+L + N N + + SQR RL + DL+ ETL LLE GG DAF++I+YM+PTY+S
Sbjct: 164 EIHWKVKAEKLDYHHYLPIFFDGLREKEEPYRFLAVQGTFDLLKYGKDKIVNCIPQLIIPIKTALNTRDPEIICTVLKVIQQLVLSN-EKVGEALVPYYRQIL---PIFNLFKTNNINLGDAIEYSQRKRLNIGDLIEETLQLLEQEGGEDAFINIKYMIPTYES 324
BLAST of EWM28989.1 vs. NCBI_GenBank
Match: gi|820694016|tpe|CEL69756.1| (TPA: flagellar/basal body protein, PACRG family protein [Neospora caninum Liverpool]) HSP 1 Score: 144.436 bits (363), Expect = 1.949e-39 Identity = 75/174 (43.10%), Postives = 114/174 (65.52%), Query Frame = 0
Query: 16 KASSLRLQWYVHPTKLDYRVVLPLFLEGLREVKDPYRYLAVRGSMDLIASCPSKLMACVPFLLPPLKRALDTRHPLILATSLTVLQEFILADPSRIGPALVPHYHQLLGASAVI--NKQTYGNEDRKGEMASSQRRLC-VTDLMNETLTLLEITGGRDAFLHIRYMVPTYDSVL 186
K S R+ W + LDY+ LPLF +G+RE +DPYR+LAV+G DL+ P K++ +P L+ P+K+ALDTR I+AT+L +LQ +L+ IG AL+P+Y Q+L ++ N + G+ ++ QRR C + DL+ ETL +LE+ GG DAF++I+YM+PTY+S +
Sbjct: 88 KGSGNRVLWKIDFALLDYQYFLPLFFDGIREKEDPYRFLAVQGVYDLLQGAPQKILPVIPQLVIPIKKALDTRDSEIIATTLKILQALVLSG-EDIGKALLPYYRQILPCFNLLINNHKNIGD-----KICYGQRRGCDLGDLIEETLHILELNGGPDAFINIKYMIPTYESCV 255
BLAST of EWM28989.1 vs. NCBI_GenBank
Match: gi|401411223|ref|XP_003885059.1| (conserved hypothetical protein [Neospora caninum Liverpool] >gi|325119478|emb|CBZ55031.1| conserved hypothetical protein [Neospora caninum Liverpool]) HSP 1 Score: 143.665 bits (361), Expect = 3.498e-39 Identity = 76/176 (43.18%), Postives = 115/176 (65.34%), Query Frame = 0
Query: 16 KASSLRLQWYVHPTKLDYRVVLPLFLEGLREVKDPYRYLAVRGSMDLIASCPSKLMACVPFLLPPLKRALDTRHPLILATSLTVLQEFILADPSR--IGPALVPHYHQLLGASAVI--NKQTYGNEDRKGEMASSQRRLC-VTDLMNETLTLLEITGGRDAFLHIRYMVPTYDSVL 186
K S R+ W + LDY+ LPLF +G+RE +DPYR+LAV+G DL+ P K++ +P L+ P+K+ALDTR I+AT+L +LQ +L+ R IG AL+P+Y Q+L ++ N + G+ ++ QRR C + DL+ ETL +LE+ GG DAF++I+YM+PTY+S +
Sbjct: 88 KGSGNRVLWKIDFALLDYQYFLPLFFDGIREKEDPYRFLAVQGVYDLLQGAPQKILPVIPQLVIPIKKALDTRDSEIIATTLKILQALVLSGILREDIGKALLPYYRQILPCFNLLINNHKNIGD-----KICYGQRRGCDLGDLIEETLHILELNGGPDAFINIKYMIPTYESCV 258
BLAST of EWM28989.1 vs. NCBI_GenBank
Match: gi|551662149|ref|XP_005833840.1| (hypothetical protein GUITHDRAFT_49760, partial [Guillardia theta CCMP2712] >gi|428177983|gb|EKX46860.1| hypothetical protein GUITHDRAFT_49760, partial [Guillardia theta CCMP2712]) HSP 1 Score: 141.354 bits (355), Expect = 6.703e-39 Identity = 72/176 (40.91%), Postives = 110/176 (62.50%), Query Frame = 0
Query: 10 PRPLPSKASSLRLQWYVHPTKLDYRVVLPLFLEGLREVKDPYRYLAVRGSMDLIASCPSKLMACVPFLLPPLKRALDTRHPLILATSLTVLQEFILADPSRIGPALVPHYHQLLGASAVINKQTYGNEDRKGEMASSQR-RLCVTDLMNETLTLLEITGGRDAFLHIRYMVPTYDS 184
P + + R+QW V KLDY LP+F++GLRE ++PYR+LA++G+ D++ K++ +P L+ P K AL+TR P ++ L VLQ+ +++ IG ALVP+Y QLL + N N + ++ +QR R+ + DL+ ETL L E GG DAF++I+YMVPTY+S
Sbjct: 27 PIAVEHSGAGNRIQWKVDIEKLDYHHYLPIFVDGLREKEEPYRFLAIQGTFDMLEHGGGKILPVIPQLIIPFKTALNTRDPAVIVVVLKVLQQLVISG-DMIGEALVPYYRQLL---PIFNLFKNNNVNVGDKIVYNQRKRVNLGDLIQETLELFEANGGEDAFINIKYMVPTYES 198
BLAST of EWM28989.1 vs. NCBI_GenBank
Match: gi|955174096|emb|CUG61013.1| (Hypothetical protein, putative [Bodo saltans]) HSP 1 Score: 141.739 bits (356), Expect = 3.805e-38 Identity = 74/178 (41.57%), Postives = 116/178 (65.17%), Query Frame = 0
Query: 10 PRPLPSKASSLRLQWYVHPTKLDYRVVLPLFLEGLREVKDPYRYLAVRGSMDLIASCPSKLMACVPFLLPPLKRALDTRHPLILATSLTVLQEFILADPSRIGPALVPHYHQLLGASAVINKQTYGNEDRKGEMASSQR-RLCVTDLMNETLTLLEITGGRDAFLHIRYMVPTYDSVL 186
P + +++ + W V KLDY LP+F +G+RE+++PY+++A++G +DL+ SK++ +P L+ P+K AL T+HP IL T+L V+Q+ +++ IG ALVP+Y Q+L V+N N + + SQR R + DL+NETL LLE GG DAF++I+YMVPTY+S +
Sbjct: 107 PISIQHRSNGRTISWKVDAEKLDYHHYLPIFFDGIRELEEPYKFIAMQGCLDLLEKGGSKILPTIPQLIIPIKFALSTKHPEILTTALKVIQKLVVSG-ELIGEALVPYYRQIL---PVLNLFRTKNANLFDGIEYSQRKRENLGDLINETLQLLEANGGEDAFINIKYMVPTYESCV 280
BLAST of EWM28989.1 vs. NCBI_GenBank
Match: gi|594146699|emb|CCW68961.1| (unnamed protein product [Phytomonas sp. isolate Hart1]) HSP 1 Score: 140.969 bits (354), Expect = 1.521e-37 Identity = 72/170 (42.35%), Postives = 112/170 (65.88%), Query Frame = 0
Query: 17 ASSLRLQWYVHPTKLDYRVVLPLFLEGLREVKDPYRYLAVRGSMDLIASCPSKLMACVPFLLPPLKRALDTRHPLILATSLTVLQEFILADPSRIGPALVPHYHQLLGASAVINKQTYGNEDRKGEMASSQRRLCVTDLMNETLTLLEITGGRDAFLHIRYMVPTYDSVL 186
A+ LQW V KLDY LP+F++GLRE+++PY ++A+RG++DL+ SK++A +P L+ PLK AL+ RHP IL + VL++ +++ +G ALVP+Y QLL + ++ DR + + R +T L+NETL +LE GG DAF++I+Y+VPTY+S +
Sbjct: 143 ATQRVLQWKVEVKKLDYHYYLPIFMDGLRELEEPYSFVALRGTIDLLELGGSKILATIPQLIVPLKTALNVRHPEILVKVMKVLKQLLVSG-EYVGEALVPYYRQLLPVLNIFKNRSRSTGDRM-DFGQYKHR-DITGLINETLNMLEKYGGEDAFINIKYLVPTYESCM 309
BLAST of EWM28989.1 vs. NCBI_GenBank
Match: gi|299473524|emb|CBN77920.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 142.895 bits (359), Expect = 1.547e-37 Identity = 74/164 (45.12%), Postives = 110/164 (67.07%), Query Frame = 0
Query: 22 LQWYVHPTKLDYRVVLPLFLEGLREVKDPYRYLAVRGSMDLIASCPSKLMACVPFLLPPLKRALDTRHPLILATSLTVLQEFILADPSRIGPALVPHYHQLLGASAVINKQTYGNEDRKGEMASSQR-RLCVTDLMNETLTLLEITGGRDAFLHIRYMVPTYDS 184
++W + P LD+ V LP+F +GLREV+DPYR+LAV+G++D+I P K++ +P L+ P+K AL+TR P I+ +L +LQ+ IL P IG ALVP+Y QLL + N N + + +QR R+ V L+ ETL ++E GG DAF++I+YM+PTY+S
Sbjct: 232 IRWKIRPADLDFHVYLPIFFDGLREVEDPYRFLAVQGTVDMIEGAPDKVLPVIPQLILPMKTALNTREPRIICPTLKILQQMILLSPM-IGQALVPYYRQLL---PMFNLFRGMNSNMGDAIDYNQRSRINVGKLIMETLEVMEQFGGPDAFINIKYMIPTYES 391
BLAST of EWM28989.1 vs. NCBI_GenBank
Match: gi|302784432|ref|XP_002973988.1| (hypothetical protein SELMODRAFT_450299, partial [Selaginella moellendorffii] >gi|300158320|gb|EFJ24943.1| hypothetical protein SELMODRAFT_450299, partial [Selaginella moellendorffii]) HSP 1 Score: 137.502 bits (345), Expect = 2.260e-37 Identity = 71/179 (39.66%), Postives = 112/179 (62.57%), Query Frame = 0
Query: 10 PRPLPSKASSLRLQWYVHPTKLDYRVVLPLFLEGLREVKDPYRYLAVRGSMDLIASCPSKLMACVPFLLPPLKRALDTRHPLILATSLTVLQEFILADPSRIGPALVPHYHQLLGASAVI--NKQTYGNEDRKGEMASSQRRLCVTDLMNETLTLLEITGGRDAFLHIRYMVPTYDSVL 186
P + + + L W KLDY LP+F EG+RE +DPYR++AV+GS DL+ + K++ACVP L+ P+K AL+TR P ++ +L +L + ++++ IG +LVP+Y QLL + N + G G+ Q++ C+ +L+ +TL L E GG DAF++I+YMVPTY+S +
Sbjct: 28 PIQVDHSTAKIALLWKTDVKKLDYHHYLPIFFEGIREKEDPYRFIAVKGSEDLLKTGQGKILACVPQLIIPIKTALNTRDPGVITIALQLLCKLVVSE-ELIGQSLVPYYRQLLPILNIFKNNVKNLGGHIDYGQ----QKKNCMGELVEKTLELFETHGGEDAFINIKYMVPTYESCV 201
BLAST of EWM28989.1 vs. NCBI_GenBank
Match: gi|302803508|ref|XP_002983507.1| (hypothetical protein SELMODRAFT_118401, partial [Selaginella moellendorffii] >gi|300148750|gb|EFJ15408.1| hypothetical protein SELMODRAFT_118401, partial [Selaginella moellendorffii]) HSP 1 Score: 137.117 bits (344), Expect = 3.484e-37 Identity = 71/179 (39.66%), Postives = 112/179 (62.57%), Query Frame = 0
Query: 10 PRPLPSKASSLRLQWYVHPTKLDYRVVLPLFLEGLREVKDPYRYLAVRGSMDLIASCPSKLMACVPFLLPPLKRALDTRHPLILATSLTVLQEFILADPSRIGPALVPHYHQLLGASAVI--NKQTYGNEDRKGEMASSQRRLCVTDLMNETLTLLEITGGRDAFLHIRYMVPTYDSVL 186
P + + + L W KLDY LP+F EG+RE +DPYR++AV+GS DL+ + K++ACVP L+ P+K AL+TR P ++ +L +L + ++++ IG +LVP+Y QLL + N + G G+ Q++ C+ +L+ +TL L E GG DAF++I+YMVPTY+S +
Sbjct: 28 PIQVDHSTAKIALLWKTDVKKLDYHHYLPIFFEGIREKEDPYRFIAVKGSEDLLKTGQGKILACVPQLIIPIKTALNTRDPGVITIALQLLCKLVVSE-ELIGQSLVPYYRQLLPILNIFKNNVRNLGGHIDYGQ----QKKNCMGELVEKTLELFETHGGEDAFINIKYMVPTYESCV 201 The following BLAST results are available for this feature:
BLAST of EWM28989.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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