EWM28989.1, cds1683 (CDS) Nannochloropsis gaditana

Overview
NameEWM28989.1
Unique Namecds1683
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1260276..1260323 +
Alignment locationCM002457.1:1260725..1261261 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28989.1
ProductArmadillo-like helical
Orig transcript idgnl|cribi|Naga_100817g2.7274.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1260276..1260323 +
CM002457.1supercontigCM002457.1:1260725..1261261 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR019399Parkin_co-regulated_protein
IPR011989ARM-like
Homology
BLAST of EWM28989.1 vs. NCBI_GenBank
Match: gi|585111485|gb|EWM28989.1| (Armadillo-like helical [Nannochloropsis gaditana])

HSP 1 Score: 397.897 bits (1021), Expect = 3.101e-140
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0
Query:    1 MTTFTTDLSPRPLPSKASSLRLQWYVHPTKLDYRVVLPLFLEGLREVKDPYRYLAVRGSMDLIASCPSKLMACVPFLLPPLKRALDTRHPLILATSLTVLQEFILADPSRIGPALVPHYHQLLGASAVINKQTYGNEDRKGEMASSQRRLCVTDLMNETLTLLEITGGRDAFLHIRYMVPTYDSVLQQGVRSIW 194
            MTTFTTDLSPRPLPSKASSLRLQWYVHPTKLDYRVVLPLFLEGLREVKDPYRYLAVRGSMDLIASCPSKLMACVPFLLPPLKRALDTRHPLILATSLTVLQEFILADPSRIGPALVPHYHQLLGASAVINKQTYGNEDRKGEMASSQRRLCVTDLMNETLTLLEITGGRDAFLHIRYMVPTYDSVLQQGVRSIW
Sbjct:    1 MTTFTTDLSPRPLPSKASSLRLQWYVHPTKLDYRVVLPLFLEGLREVKDPYRYLAVRGSMDLIASCPSKLMACVPFLLPPLKRALDTRHPLILATSLTVLQEFILADPSRIGPALVPHYHQLLGASAVINKQTYGNEDRKGEMASSQRRLCVTDLMNETLTLLEITGGRDAFLHIRYMVPTYDSVLQQGVRSIW 194          
BLAST of EWM28989.1 vs. NCBI_GenBank
Match: gi|291000887|ref|XP_002683010.1| (hypothetical protein NAEGRDRAFT_82851 [Naegleria gruberi] >gi|284096639|gb|EFC50266.1| hypothetical protein NAEGRDRAFT_82851 [Naegleria gruberi])

HSP 1 Score: 148.288 bits (373), Expect = 3.730e-40
Identity = 74/165 (44.85%), Postives = 109/165 (66.06%), Query Frame = 0
Query:   21 RLQWYVHPTKLDYRVVLPLFLEGLREVKDPYRYLAVRGSMDLIASCPSKLMACVPFLLPPLKRALDTRHPLILATSLTVLQEFILADPSRIGPALVPHYHQLLGASAVINKQTYGNEDRKGEMASSQR-RLCVTDLMNETLTLLEITGGRDAFLHIRYMVPTYDS 184
             + W V   KLDY   LP+F +GLRE ++PYR+LAV+G+ DL+     K++ C+P L+ P+K AL+TR P I+ T L V+Q+ +L++  ++G ALVP+Y Q+L    + N     N +    +  SQR RL + DL+ ETL LLE  GG DAF++I+YM+PTY+S
Sbjct:  164 EIHWKVKAEKLDYHHYLPIFFDGLREKEEPYRFLAVQGTFDLLKYGKDKIVNCIPQLIIPIKTALNTRDPEIICTVLKVIQQLVLSN-EKVGEALVPYYRQIL---PIFNLFKTNNINLGDAIEYSQRKRLNIGDLIEETLQLLEQEGGEDAFINIKYMIPTYES 324          
BLAST of EWM28989.1 vs. NCBI_GenBank
Match: gi|820694016|tpe|CEL69756.1| (TPA: flagellar/basal body protein, PACRG family protein [Neospora caninum Liverpool])

HSP 1 Score: 144.436 bits (363), Expect = 1.949e-39
Identity = 75/174 (43.10%), Postives = 114/174 (65.52%), Query Frame = 0
Query:   16 KASSLRLQWYVHPTKLDYRVVLPLFLEGLREVKDPYRYLAVRGSMDLIASCPSKLMACVPFLLPPLKRALDTRHPLILATSLTVLQEFILADPSRIGPALVPHYHQLLGASAVI--NKQTYGNEDRKGEMASSQRRLC-VTDLMNETLTLLEITGGRDAFLHIRYMVPTYDSVL 186
            K S  R+ W +    LDY+  LPLF +G+RE +DPYR+LAV+G  DL+   P K++  +P L+ P+K+ALDTR   I+AT+L +LQ  +L+    IG AL+P+Y Q+L    ++  N +  G+     ++   QRR C + DL+ ETL +LE+ GG DAF++I+YM+PTY+S +
Sbjct:   88 KGSGNRVLWKIDFALLDYQYFLPLFFDGIREKEDPYRFLAVQGVYDLLQGAPQKILPVIPQLVIPIKKALDTRDSEIIATTLKILQALVLSG-EDIGKALLPYYRQILPCFNLLINNHKNIGD-----KICYGQRRGCDLGDLIEETLHILELNGGPDAFINIKYMIPTYESCV 255          
BLAST of EWM28989.1 vs. NCBI_GenBank
Match: gi|401411223|ref|XP_003885059.1| (conserved hypothetical protein [Neospora caninum Liverpool] >gi|325119478|emb|CBZ55031.1| conserved hypothetical protein [Neospora caninum Liverpool])

HSP 1 Score: 143.665 bits (361), Expect = 3.498e-39
Identity = 76/176 (43.18%), Postives = 115/176 (65.34%), Query Frame = 0
Query:   16 KASSLRLQWYVHPTKLDYRVVLPLFLEGLREVKDPYRYLAVRGSMDLIASCPSKLMACVPFLLPPLKRALDTRHPLILATSLTVLQEFILADPSR--IGPALVPHYHQLLGASAVI--NKQTYGNEDRKGEMASSQRRLC-VTDLMNETLTLLEITGGRDAFLHIRYMVPTYDSVL 186
            K S  R+ W +    LDY+  LPLF +G+RE +DPYR+LAV+G  DL+   P K++  +P L+ P+K+ALDTR   I+AT+L +LQ  +L+   R  IG AL+P+Y Q+L    ++  N +  G+     ++   QRR C + DL+ ETL +LE+ GG DAF++I+YM+PTY+S +
Sbjct:   88 KGSGNRVLWKIDFALLDYQYFLPLFFDGIREKEDPYRFLAVQGVYDLLQGAPQKILPVIPQLVIPIKKALDTRDSEIIATTLKILQALVLSGILREDIGKALLPYYRQILPCFNLLINNHKNIGD-----KICYGQRRGCDLGDLIEETLHILELNGGPDAFINIKYMIPTYESCV 258          
BLAST of EWM28989.1 vs. NCBI_GenBank
Match: gi|551662149|ref|XP_005833840.1| (hypothetical protein GUITHDRAFT_49760, partial [Guillardia theta CCMP2712] >gi|428177983|gb|EKX46860.1| hypothetical protein GUITHDRAFT_49760, partial [Guillardia theta CCMP2712])

HSP 1 Score: 141.354 bits (355), Expect = 6.703e-39
Identity = 72/176 (40.91%), Postives = 110/176 (62.50%), Query Frame = 0
Query:   10 PRPLPSKASSLRLQWYVHPTKLDYRVVLPLFLEGLREVKDPYRYLAVRGSMDLIASCPSKLMACVPFLLPPLKRALDTRHPLILATSLTVLQEFILADPSRIGPALVPHYHQLLGASAVINKQTYGNEDRKGEMASSQR-RLCVTDLMNETLTLLEITGGRDAFLHIRYMVPTYDS 184
            P  +    +  R+QW V   KLDY   LP+F++GLRE ++PYR+LA++G+ D++     K++  +P L+ P K AL+TR P ++   L VLQ+ +++    IG ALVP+Y QLL    + N     N +   ++  +QR R+ + DL+ ETL L E  GG DAF++I+YMVPTY+S
Sbjct:   27 PIAVEHSGAGNRIQWKVDIEKLDYHHYLPIFVDGLREKEEPYRFLAIQGTFDMLEHGGGKILPVIPQLIIPFKTALNTRDPAVIVVVLKVLQQLVISG-DMIGEALVPYYRQLL---PIFNLFKNNNVNVGDKIVYNQRKRVNLGDLIQETLELFEANGGEDAFINIKYMVPTYES 198          
BLAST of EWM28989.1 vs. NCBI_GenBank
Match: gi|955174096|emb|CUG61013.1| (Hypothetical protein, putative [Bodo saltans])

HSP 1 Score: 141.739 bits (356), Expect = 3.805e-38
Identity = 74/178 (41.57%), Postives = 116/178 (65.17%), Query Frame = 0
Query:   10 PRPLPSKASSLRLQWYVHPTKLDYRVVLPLFLEGLREVKDPYRYLAVRGSMDLIASCPSKLMACVPFLLPPLKRALDTRHPLILATSLTVLQEFILADPSRIGPALVPHYHQLLGASAVINKQTYGNEDRKGEMASSQR-RLCVTDLMNETLTLLEITGGRDAFLHIRYMVPTYDSVL 186
            P  +  +++   + W V   KLDY   LP+F +G+RE+++PY+++A++G +DL+    SK++  +P L+ P+K AL T+HP IL T+L V+Q+ +++    IG ALVP+Y Q+L    V+N     N +    +  SQR R  + DL+NETL LLE  GG DAF++I+YMVPTY+S +
Sbjct:  107 PISIQHRSNGRTISWKVDAEKLDYHHYLPIFFDGIRELEEPYKFIAMQGCLDLLEKGGSKILPTIPQLIIPIKFALSTKHPEILTTALKVIQKLVVSG-ELIGEALVPYYRQIL---PVLNLFRTKNANLFDGIEYSQRKRENLGDLINETLQLLEANGGEDAFINIKYMVPTYESCV 280          
BLAST of EWM28989.1 vs. NCBI_GenBank
Match: gi|594146699|emb|CCW68961.1| (unnamed protein product [Phytomonas sp. isolate Hart1])

HSP 1 Score: 140.969 bits (354), Expect = 1.521e-37
Identity = 72/170 (42.35%), Postives = 112/170 (65.88%), Query Frame = 0
Query:   17 ASSLRLQWYVHPTKLDYRVVLPLFLEGLREVKDPYRYLAVRGSMDLIASCPSKLMACVPFLLPPLKRALDTRHPLILATSLTVLQEFILADPSRIGPALVPHYHQLLGASAVINKQTYGNEDRKGEMASSQRRLCVTDLMNETLTLLEITGGRDAFLHIRYMVPTYDSVL 186
            A+   LQW V   KLDY   LP+F++GLRE+++PY ++A+RG++DL+    SK++A +P L+ PLK AL+ RHP IL   + VL++ +++    +G ALVP+Y QLL    +   ++    DR  +    + R  +T L+NETL +LE  GG DAF++I+Y+VPTY+S +
Sbjct:  143 ATQRVLQWKVEVKKLDYHYYLPIFMDGLRELEEPYSFVALRGTIDLLELGGSKILATIPQLIVPLKTALNVRHPEILVKVMKVLKQLLVSG-EYVGEALVPYYRQLLPVLNIFKNRSRSTGDRM-DFGQYKHR-DITGLINETLNMLEKYGGEDAFINIKYLVPTYESCM 309          
BLAST of EWM28989.1 vs. NCBI_GenBank
Match: gi|299473524|emb|CBN77920.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 142.895 bits (359), Expect = 1.547e-37
Identity = 74/164 (45.12%), Postives = 110/164 (67.07%), Query Frame = 0
Query:   22 LQWYVHPTKLDYRVVLPLFLEGLREVKDPYRYLAVRGSMDLIASCPSKLMACVPFLLPPLKRALDTRHPLILATSLTVLQEFILADPSRIGPALVPHYHQLLGASAVINKQTYGNEDRKGEMASSQR-RLCVTDLMNETLTLLEITGGRDAFLHIRYMVPTYDS 184
            ++W + P  LD+ V LP+F +GLREV+DPYR+LAV+G++D+I   P K++  +P L+ P+K AL+TR P I+  +L +LQ+ IL  P  IG ALVP+Y QLL    + N     N +    +  +QR R+ V  L+ ETL ++E  GG DAF++I+YM+PTY+S
Sbjct:  232 IRWKIRPADLDFHVYLPIFFDGLREVEDPYRFLAVQGTVDMIEGAPDKVLPVIPQLILPMKTALNTREPRIICPTLKILQQMILLSPM-IGQALVPYYRQLL---PMFNLFRGMNSNMGDAIDYNQRSRINVGKLIMETLEVMEQFGGPDAFINIKYMIPTYES 391          
BLAST of EWM28989.1 vs. NCBI_GenBank
Match: gi|302784432|ref|XP_002973988.1| (hypothetical protein SELMODRAFT_450299, partial [Selaginella moellendorffii] >gi|300158320|gb|EFJ24943.1| hypothetical protein SELMODRAFT_450299, partial [Selaginella moellendorffii])

HSP 1 Score: 137.502 bits (345), Expect = 2.260e-37
Identity = 71/179 (39.66%), Postives = 112/179 (62.57%), Query Frame = 0
Query:   10 PRPLPSKASSLRLQWYVHPTKLDYRVVLPLFLEGLREVKDPYRYLAVRGSMDLIASCPSKLMACVPFLLPPLKRALDTRHPLILATSLTVLQEFILADPSRIGPALVPHYHQLLGASAVI--NKQTYGNEDRKGEMASSQRRLCVTDLMNETLTLLEITGGRDAFLHIRYMVPTYDSVL 186
            P  +    + + L W     KLDY   LP+F EG+RE +DPYR++AV+GS DL+ +   K++ACVP L+ P+K AL+TR P ++  +L +L + ++++   IG +LVP+Y QLL    +   N +  G     G+    Q++ C+ +L+ +TL L E  GG DAF++I+YMVPTY+S +
Sbjct:   28 PIQVDHSTAKIALLWKTDVKKLDYHHYLPIFFEGIREKEDPYRFIAVKGSEDLLKTGQGKILACVPQLIIPIKTALNTRDPGVITIALQLLCKLVVSE-ELIGQSLVPYYRQLLPILNIFKNNVKNLGGHIDYGQ----QKKNCMGELVEKTLELFETHGGEDAFINIKYMVPTYESCV 201          
BLAST of EWM28989.1 vs. NCBI_GenBank
Match: gi|302803508|ref|XP_002983507.1| (hypothetical protein SELMODRAFT_118401, partial [Selaginella moellendorffii] >gi|300148750|gb|EFJ15408.1| hypothetical protein SELMODRAFT_118401, partial [Selaginella moellendorffii])

HSP 1 Score: 137.117 bits (344), Expect = 3.484e-37
Identity = 71/179 (39.66%), Postives = 112/179 (62.57%), Query Frame = 0
Query:   10 PRPLPSKASSLRLQWYVHPTKLDYRVVLPLFLEGLREVKDPYRYLAVRGSMDLIASCPSKLMACVPFLLPPLKRALDTRHPLILATSLTVLQEFILADPSRIGPALVPHYHQLLGASAVI--NKQTYGNEDRKGEMASSQRRLCVTDLMNETLTLLEITGGRDAFLHIRYMVPTYDSVL 186
            P  +    + + L W     KLDY   LP+F EG+RE +DPYR++AV+GS DL+ +   K++ACVP L+ P+K AL+TR P ++  +L +L + ++++   IG +LVP+Y QLL    +   N +  G     G+    Q++ C+ +L+ +TL L E  GG DAF++I+YMVPTY+S +
Sbjct:   28 PIQVDHSTAKIALLWKTDVKKLDYHHYLPIFFEGIREKEDPYRFIAVKGSEDLLKTGQGKILACVPQLIIPIKTALNTRDPGVITIALQLLCKLVVSE-ELIGQSLVPYYRQLLPILNIFKNNVRNLGGHIDYGQ----QKKNCMGELVEKTLELFETHGGEDAFINIKYMVPTYESCV 201          
The following BLAST results are available for this feature:
BLAST of EWM28989.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111485|gb|EWM28989.1|3.101e-140100.00Armadillo-like helical [Nannochloropsis gaditana][more]
gi|291000887|ref|XP_002683010.1|3.730e-4044.85hypothetical protein NAEGRDRAFT_82851 [Naegleria g... [more]
gi|820694016|tpe|CEL69756.1|1.949e-3943.10TPA: flagellar/basal body protein, PACRG family pr... [more]
gi|401411223|ref|XP_003885059.1|3.498e-3943.18conserved hypothetical protein [Neospora caninum L... [more]
gi|551662149|ref|XP_005833840.1|6.703e-3940.91hypothetical protein GUITHDRAFT_49760, partial [Gu... [more]
gi|955174096|emb|CUG61013.1|3.805e-3841.57Hypothetical protein, putative [Bodo saltans][more]
gi|594146699|emb|CCW68961.1|1.521e-3742.35unnamed protein product [Phytomonas sp. isolate Ha... [more]
gi|299473524|emb|CBN77920.1|1.547e-3745.12conserved unknown protein [Ectocarpus siliculosus][more]
gi|302784432|ref|XP_002973988.1|2.260e-3739.66hypothetical protein SELMODRAFT_450299, partial [S... [more]
gi|302803508|ref|XP_002983507.1|3.484e-3739.66hypothetical protein SELMODRAFT_118401, partial [S... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1687rna1687Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications