rna1686, rna1686 (mRNA) Nannochloropsis gaditana

Overview
Namerna1686
Unique Namerna1686
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length702
Alignment locationCM002457.1:1256961..1258075 -

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Properties
Property NameValue
Productnuclear protein set
Orig transcript idgnl|cribi|Naga_100817g1.7276.mrna
Orig protein idgnl|cribi|Naga_100817g1.7276
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1256961..1258075 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100817g1gene1623Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1686rna1686-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28991.1cds1682Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1686 ID=rna1686|Name=rna1686|organism=Nannochloropsis gaditana|type=mRNA|length=702bp
ATGGCCGACTCGACGAGCGTCATTGCCATCCGGAACATCGCCGCGGGGGA
GGAGATCACCATCGACTACGCGACGGTCAACAGCGGCTTAAATACCTCCG
AGGGTGACAATTTTACCTGCCGCTGTCAGGCACGTGATTGTCGGGGATTA
GTGACCAGTCGAGATTGGATGCTCCCGAAAGTGCAAGAAAAGTACTGGCC
GCATTTCCCACCCTTTGTCCGGCGTTTGATCCTGTCACAGGCACCAAGGC
CAGGAAGCGTAAGGAGGAACGGCGGAGCCTCGGGACCTTCCGCAACAGGG
CAACGTCCGGGAAGGAGAGAACGTCATTCGAGGGGAAATAAAGGAAGAAG
GAGGAACGAGGAGCGTGGCGGAAATTTCGTGGCCTTCGAGACGCCAAAAG
CAGGTGTCAAGGACAAGCGTTGCGGTGCTGAGAGGGGTCGGACAACGGTG
TGCTCCAGGATGGTGTTGCTGCCGTCCATCCCACCCCTCGCGAAGACAGG
GAGAAAGCAAGCACGTACCACGCAGCACCAGATAAGATATCAGGGTCCGA
CCACATCTTGTGCACTGAGAAAGGCGCACTTTTCGCAGGACTTTAGTGTA
TCGCTAATCAAAGAGAATCATGTGTGTGGCGCGACGCCGTGCCTCTATCG
TGGCAGTGGAGGAAGCAAGTGCATCTGTTTTGGACAGAGCGAGCACCCAT
AG
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protein sequence of rna1686

>rna1686-protein ID=rna1686-protein|Name=rna1686|organism=Nannochloropsis gaditana|type=polypeptide|length=137bp
MLVDKVEVRYHNLYGFECRGIFAKETIKAGEMIWTYKEGTEILRTYHKHQ
IDALPPSPAKVNLVTYSYMLDDDLYGSTPNPEEDPSYFFNHSCAPNCWYS
GDNLIVAMRDIRKDEHIVYDYAMTETEASLHAGLVCL
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mRNA from alignment at CM002457.1:1256961..1258075-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1686 ID=rna1686|Name=rna1686|organism=Nannochloropsis gaditana|type=mRNA|length=1115bp|location=Sequence derived from alignment at CM002457.1:1256961..1258075- (Nannochloropsis gaditana)
ATGTTAGTTGACAAAGTTGAAGTACGTTATCACAATCTGTACGGATTTGA
ATGTCGTGGAATTTTTGCCAAGGAAACAATCAAGGTACGCATGTATGTCC
CCCCGCGTTGGGTTCTTCTTTCTTCCTCATTATTTGCGAGGTACCCTTTG
CATCTCACATTGATCCGCATGCCGTTCTCAATGTAGGCCGGGGAAATGAT
ATGGACGTACAAGGAAGGGACCGAGATCCTCCGCACCTACCACAAGCATC
AGATCGACGCCTTGCCTCCCTCTCCCGCCAAAGTGAACCTTGTGACGTAT
TCTTATATGCTAGATGACGATCTGTACGGTTCAACACCAAATCCTGAAGG
TCAGCAATGCCAAGTAGTCCGCTTGTATTTTCGCACTGGAACGGGCCTCT
TTCTAAACCCTTGGATCGATGCGCTCCCGGCTCATCCTCCCTCCATCGCC
ATTCTATTCCCCCCCTCCTCCCCCTCCTTCCCCTCCTCCCCCTCCTCCCC
CAGAGGACCCCTCGTACTTCTTCAACCACTCCTGTGCTCCCAATTGCTGG
TACAGCGGAGACAACCTGATCGTGGCCATGCGGGACATCCGCAAGGACGA
GCACATCGTCTACGACTACGCTATGACCGAGACAGAGGCTTCCCTGCACG
CGGGCCTGGTCTGTTTGTGCGGGGCAGGGACGAAGGAGGGCGGGAGGGAG
GGCGGGAGGGAGGAAGGGGTCCATTGCCGCGGGGTACTTCGCTTTGACGA
CTGGCGTCGAGCGTCGTGGGCGCACCGATACCGGAAACACGTCACGAGCT
ACGTGCACAAGAAAATGGAGGAAAATTCCTGGCTCGACCCTCGGATCGTC
CTCCGGTACAAGAAAAGGGGAGGCGACGGGGGCGAAGAGGAAGGGGAGGG
TCGCCAAGGAGAAGGGGAGGGGGGGGGCGAAGGAGGGATGGAAGAAGGAG
GGGAAGGAGAGGACGGGGGGAGGGCGACGGGGTTGGACAAGGGGTTGGTG
GCGACGGCGCCTGTGCAGAAGGGGGAGCTGCTCCTGGTCTTTGTGGGCAA
AGTCGTGGACCTGGACGGGCTGCTGGCGTCAGGACGACGGAACATGGAGC
TGTCCTTGCAGGTAG
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Coding sequence (CDS) from alignment at CM002457.1:1256961..1258075-

>rna1686 ID=rna1686|Name=rna1686|organism=Nannochloropsis gaditana|type=CDS|length=1656bp|location=Sequence derived from alignment at CM002457.1:1256961..1258075- (Nannochloropsis gaditana)
GTAGAGGACCCCTCGTACTTCTTCAACCACTCCTGTGCTCCCAATTGCTG
GTACAGCGGAGACAACCTGATCGTGGCCATGCGGGACATCCGCAAGGACG
AGCACATCGTCTACGACTACGCTATGACCGAGACAGAGGCTTCCCTGCAC
GCGGGCCTGGTCTGTTTGCCGGGGAAATGATATGGACGTACAAGGAAGGG
ACCGAGATCCTCCGCACCTACCACAAGCATCAGATCGACGCCTTGCCTCC
CTCTCCCGCCAAAGTGAACCTTGTGACGTATTCTTATATGCTAGATGACG
ATCTGTACGGTTCAACACCAAATCCTGAAGATGTTAGTTGACAAAGTTGA
AGTACGTTATCACAATCTGTACGGATTTGAATGTCGTGGAATTTTTGCCA
AGGAAACAATCAAGGTAGAGGACCCCTCGTACTTCTTCAACCACTCCTGT
GCTCCCAATTGCTGGTACAGCGGAGACAACCTGATCGTGGCCATGCGGGA
CATCCGCAAGGACGAGCACATCGTCTACGACTACGCTATGACCGAGACAG
AGGCTTCCCTGCACGCGGGCCTGGTCTGTTTGCCGGGGAAATGATATGGA
CGTACAAGGAAGGGACCGAGATCCTCCGCACCTACCACAAGCATCAGATC
GACGCCTTGCCTCCCTCTCCCGCCAAAGTGAACCTTGTGACGTATTCTTA
TATGCTAGATGACGATCTGTACGGTTCAACACCAAATCCTGAAGATGTTA
GTTGACAAAGTTGAAGTACGTTATCACAATCTGTACGGATTTGAATGTCG
TGGAATTTTTGCCAAGGAAACAATCAAGGTAGAGGACCCCTCGTACTTCT
TCAACCACTCCTGTGCTCCCAATTGCTGGTACAGCGGAGACAACCTGATC
GTGGCCATGCGGGACATCCGCAAGGACGAGCACATCGTCTACGACTACGC
TATGACCGAGACAGAGGCTTCCCTGCACGCGGGCCTGGTCTGTTTGCCGG
GGAAATGATATGGACGTACAAGGAAGGGACCGAGATCCTCCGCACCTACC
ACAAGCATCAGATCGACGCCTTGCCTCCCTCTCCCGCCAAAGTGAACCTT
GTGACGTATTCTTATATGCTAGATGACGATCTGTACGGTTCAACACCAAA
TCCTGAAGATGTTAGTTGACAAAGTTGAAGTACGTTATCACAATCTGTAC
GGATTTGAATGTCGTGGAATTTTTGCCAAGGAAACAATCAAGGTAGAGGA
CCCCTCGTACTTCTTCAACCACTCCTGTGCTCCCAATTGCTGGTACAGCG
GAGACAACCTGATCGTGGCCATGCGGGACATCCGCAAGGACGAGCACATC
GTCTACGACTACGCTATGACCGAGACAGAGGCTTCCCTGCACGCGGGCCT
GGTCTGTTTGCCGGGGAAATGATATGGACGTACAAGGAAGGGACCGAGAT
CCTCCGCACCTACCACAAGCATCAGATCGACGCCTTGCCTCCCTCTCCCG
CCAAAGTGAACCTTGTGACGTATTCTTATATGCTAGATGACGATCTGTAC
GGTTCAACACCAAATCCTGAAGATGTTAGTTGACAAAGTTGAAGTACGTT
ATCACAATCTGTACGGATTTGAATGTCGTGGAATTTTTGCCAAGGAAACA
ATCAAG
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Synonyms
Publications