EWM28991.1, cds1682 (CDS) Nannochloropsis gaditana

Overview
NameEWM28991.1
Unique Namecds1682
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1257992..1258075 -
Alignment locationCM002457.1:1257727..1257889 -
Alignment locationCM002457.1:1257410..1257572 -
Alignment locationCM002457.1:1256961..1256964 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28991.1
Productnuclear protein set
Orig transcript idgnl|cribi|Naga_100817g1.7276.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1257992..1258075 -
CM002457.1supercontigCM002457.1:1257727..1257889 -
CM002457.1supercontigCM002457.1:1257410..1257572 -
CM002457.1supercontigCM002457.1:1256961..1256964 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001214SET_dom
Homology
BLAST of EWM28991.1 vs. NCBI_GenBank
Match: gi|585111487|gb|EWM28991.1| (nuclear protein set [Nannochloropsis gaditana])

HSP 1 Score: 290.041 bits (741), Expect = 1.698e-99
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0
Query:    1 MLVDKVEVRYHNLYGFECRGIFAKETIKAGEMIWTYKEGTEILRTYHKHQIDALPPSPAKVNLVTYSYMLDDDLYGSTPNPEEDPSYFFNHSCAPNCWYSGDNLIVAMRDIRKDEHIVYDYAMTETEASLHAGLVCL 137
            MLVDKVEVRYHNLYGFECRGIFAKETIKAGEMIWTYKEGTEILRTYHKHQIDALPPSPAKVNLVTYSYMLDDDLYGSTPNPEEDPSYFFNHSCAPNCWYSGDNLIVAMRDIRKDEHIVYDYAMTETEASLHAGLVCL
Sbjct:    1 MLVDKVEVRYHNLYGFECRGIFAKETIKAGEMIWTYKEGTEILRTYHKHQIDALPPSPAKVNLVTYSYMLDDDLYGSTPNPEEDPSYFFNHSCAPNCWYSGDNLIVAMRDIRKDEHIVYDYAMTETEASLHAGLVCL 137          
BLAST of EWM28991.1 vs. NCBI_GenBank
Match: gi|857976825|emb|CEO97620.1| (hypothetical protein PBRA_000965 [Plasmodiophora brassicae])

HSP 1 Score: 160.614 bits (405), Expect = 2.005e-45
Identity = 75/136 (55.15%), Postives = 96/136 (70.59%), Query Frame = 0
Query:    1 MLVDKVEVRYHNLYGFECRGIFAKETIKAGEMIWTYKEGTEILRTYHKHQIDALPPSPAKVNLVTYSYMLDDDLYGSTPNPEEDPSYFFNHSCAPNCWYSGDNLIVAMRDIRKDEHIVYDYAMTETEASLHAGLVC 136
            ML D +EVR  + YGF CRG+FAK  + AG +IW + +GTE +  Y + QI+A    P +  LV +SYML DD + ST +PE DPS+FFNHSC+PN WY  D  IVAMRDI+  E +VYDY+ TETEASLH+G+ C
Sbjct:    1 MLPDTIEVRPFDAYGFACRGLFAKVDMPAGALIWWHDKGTEPVDVYTRTQIEA---HPQREKLVMFSYMLGDDQFSSTADPESDPSFFFNHSCSPNTWYDTDERIVAMRDIKAGEQLVYDYSFTETEASLHSGMKC 133          
BLAST of EWM28991.1 vs. NCBI_GenBank
Match: gi|673030586|ref|XP_008869254.1| (hypothetical protein H310_06108 [Aphanomyces invadans] >gi|574475649|gb|ETW02649.1| hypothetical protein H310_06108 [Aphanomyces invadans])

HSP 1 Score: 149.443 bits (376), Expect = 3.254e-41
Identity = 71/137 (51.82%), Postives = 92/137 (67.15%), Query Frame = 0
Query:    1 MLVDKVEVRYHNLYGFECRGIFAKETIKAGEMIWTYKEGTEILRTYHKHQIDALPPSPAKVNLVTYSYMLDDDLYGSTPNPEEDPSYFFNHSCAPNCWYSGDNLIVAMRDIRKDEHIVYDYAMTETEASLHAGLVCL 137
            ML + V+V+  N YGFEC G+FAKE +  G ++W Y EG ++L TY K +I A    P +  L+TYSYM  DD + ST NP  DPS++FNHSC P CWY GD  I   RD++K E + YDY+ TETE+S+H GL CL
Sbjct:    1 MLTEVVQVKQFNDYGFECWGLFAKEDLPKGTLVW-YAEGHDVLDTYTKAEILA---HPQRETLITYSYMRGDDKFCSTLNPSSDPSWYFNHSCDPTCWYEGDERITTCRDVKKGEQLAYDYSCTETESSMHYGLRCL 133          
BLAST of EWM28991.1 vs. NCBI_GenBank
Match: gi|698787196|ref|XP_009826630.1| (hypothetical protein H257_03987 [Aphanomyces astaci] >gi|574117719|gb|ETV83200.1| hypothetical protein H257_03987 [Aphanomyces astaci])

HSP 1 Score: 148.673 bits (374), Expect = 6.520e-41
Identity = 70/137 (51.09%), Postives = 92/137 (67.15%), Query Frame = 0
Query:    1 MLVDKVEVRYHNLYGFECRGIFAKETIKAGEMIWTYKEGTEILRTYHKHQIDALPPSPAKVNLVTYSYMLDDDLYGSTPNPEEDPSYFFNHSCAPNCWYSGDNLIVAMRDIRKDEHIVYDYAMTETEASLHAGLVCL 137
            ML + V+V+  N YGFEC G+FAKE +  G ++W Y EG ++L T+ K +I A    P +  L+TYSYM  DD + ST NP  DPS++FNHSC P CWY GD  I   RD++K E + YDY+ TETE+S+H GL CL
Sbjct:    1 MLTEVVQVKQFNDYGFECWGLFAKEDLPKGTLVW-YAEGHDVLETFTKAEILA---HPEQETLITYSYMRGDDKFCSTLNPSSDPSWYFNHSCMPTCWYEGDERITTCRDVKKGEQLAYDYSCTETESSMHYGLRCL 133          
BLAST of EWM28991.1 vs. NCBI_GenBank
Match: gi|1173941600|gb|OQR90728.1| (hypothetical protein ACHHYP_05288 [Achlya hypogyna])

HSP 1 Score: 144.436 bits (363), Expect = 2.240e-39
Identity = 71/137 (51.82%), Postives = 90/137 (65.69%), Query Frame = 0
Query:    1 MLVDKVEVRYHNLYGFECRGIFAKETIKAGEMIWTYKEGTEILRTYHKHQIDALPPSPAKVNLVTYSYMLDDDLYGSTPNPEEDPSYFFNHSCAPNCWYSGDNLIVAMRDIRKDEHIVYDYAMTETEASLHAGLVCL 137
            ML + VEV+  N YGFEC G+FAKE +  G ++W Y E  +++  Y K +I A    P K  L+TYSYM  DD YGST NP  DPS++FNHSC P  WY  D+ I   RD++K E + YDYA TETE+S+H GL CL
Sbjct:    1 MLTEVVEVKKFNDYGFECMGLFAKEDLPKGTLVW-YSEDIDVVDIYTKAEILA---HPQKDTLITYSYMRGDDRYGSTLNPSSDPSWYFNHSCDPTTWYETDDRIKTCRDVKKGEQLTYDYACTETESSMHFGLQCL 133          
BLAST of EWM28991.1 vs. NCBI_GenBank
Match: gi|1173949565|gb|OQR97584.1| (3-deoxy-D-manno-octulosonic acid transferase [Achlya hypogyna])

HSP 1 Score: 149.443 bits (376), Expect = 4.180e-39
Identity = 64/136 (47.06%), Postives = 88/136 (64.71%), Query Frame = 0
Query:    1 MLVDKVEVRYHNLYGFECRGIFAKETIKAGEMIWTYKEGTEILRTYHKHQIDALPPSPAKVNLVTYSYMLDDDLYGSTPNPEEDPSYFFNHSCAPNCWYSGDNLIVAMRDIRKDEHIVYDYAMTETEASLHAGLVC 136
            ML + VE+R    YGFECRGIFA E +    ++WT+   TE L T+ +    A+   P +  L  +SYM+ DD + ST  PE DP ++FNH+C PNCW+ GD  +V  R ++K E + YDYA TETE+SLHAG++C
Sbjct:    1 MLPETVELRAFQFYGFECRGIFAVEDLPENAVVWTWDTATEPLETFTRA---AIVSHPEREKLANFSYMVGDDAFASTLEPERDPCWYFNHACDPNCWFEGDGQLVTRRAVKKGEQLCYDYACTETESSLHAGMIC 133          
BLAST of EWM28991.1 vs. NCBI_GenBank
Match: gi|1173928104|gb|OQR81801.1| (hypothetical protein THRCLA_11401 [Thraustotheca clavata])

HSP 1 Score: 143.665 bits (361), Expect = 4.679e-39
Identity = 70/137 (51.09%), Postives = 91/137 (66.42%), Query Frame = 0
Query:    1 MLVDKVEVRYHNLYGFECRGIFAKETIKAGEMIWTYKEGTEILRTYHKHQIDALPPSPAKVNLVTYSYMLDDDLYGSTPNPEEDPSYFFNHSCAPNCWYSGDNLIVAMRDIRKDEHIVYDYAMTETEASLHAGLVCL 137
            ML + V+V+  N YGFEC G+FAKE +  G +IW Y + T+++  Y K +I A    P K  L+TYSYM  DD +GST NP  D S++FNHSC P  WY GD+ I   RD++K E + YDYA TETE+S+H GL CL
Sbjct:    1 MLTEVVKVKKFNDYGFECMGLFAKEDLPKGTLIW-YSQDTDVVDIYTKAEILA---HPMKDTLITYSYMRGDDKFGSTLNPSSDASWYFNHSCDPTTWYEGDDRITTCRDVKKGEQLTYDYACTETESSMHYGLKCL 133          
BLAST of EWM28991.1 vs. NCBI_GenBank
Match: gi|813200050|ref|XP_012209596.1| (hypothetical protein SPRG_14759 [Saprolegnia parasitica CBS 223.65] >gi|641525196|gb|KDO19679.1| hypothetical protein SPRG_14759 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 141.354 bits (355), Expect = 4.128e-38
Identity = 68/137 (49.64%), Postives = 90/137 (65.69%), Query Frame = 0
Query:    1 MLVDKVEVRYHNLYGFECRGIFAKETIKAGEMIWTYKEGTEILRTYHKHQIDALPPSPAKVNLVTYSYMLDDDLYGSTPNPEEDPSYFFNHSCAPNCWYSGDNLIVAMRDIRKDEHIVYDYAMTETEASLHAGLVCL 137
            ML + V+V+  + YGFEC G+FAKE +  G +IW Y +  +++  Y K +I A    P K  L+TYSYM  DD +G+T NP  DPS++FNHSC P  WY GD  I   RD++K E + YDYA TETE+S+H GL CL
Sbjct:    1 MLTEVVDVKKFHDYGFECMGLFAKEDLPKGTLIW-YSQDIDVVDIYTKAEILA---HPQKDTLITYSYMRGDDKFGTTLNPSSDPSWYFNHSCDPTTWYEGDERITTCRDVKKGEQLTYDYACTETESSMHYGLQCL 133          
BLAST of EWM28991.1 vs. NCBI_GenBank
Match: gi|553194460|ref|XP_005855960.1| (hypothetical protein NGA_0547300, partial [Nannochloropsis gaditana CCMP526] >gi|422293103|gb|EKU20403.1| hypothetical protein NGA_0547300, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 133.65 bits (335), Expect = 6.924e-38
Identity = 61/70 (87.14%), Postives = 65/70 (92.86%), Query Frame = 0
Query:    1 MLVDKVEVRYHNLYGFECRGIFAKETIKAGEMIWTYKEGTEILRTYHKHQIDALPPSPAKVNLVTYSYML 70
            MLVDKVEVRYHNLYGFECRGIFAKETIKAGEMIWTYKEGTEILRTYHKHQIDALPPSPAK+ + T  + +
Sbjct:   36 MLVDKVEVRYHNLYGFECRGIFAKETIKAGEMIWTYKEGTEILRTYHKHQIDALPPSPAKMTICTVQHQI 105          
BLAST of EWM28991.1 vs. NCBI_GenBank
Match: gi|813199674|ref|XP_012209408.1| (hypothetical protein SPRG_14749 [Saprolegnia parasitica CBS 223.65] >gi|641525449|gb|KDO19906.1| hypothetical protein SPRG_14749 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 139.813 bits (351), Expect = 1.292e-37
Identity = 67/137 (48.91%), Postives = 90/137 (65.69%), Query Frame = 0
Query:    1 MLVDKVEVRYHNLYGFECRGIFAKETIKAGEMIWTYKEGTEILRTYHKHQIDALPPSPAKVNLVTYSYMLDDDLYGSTPNPEEDPSYFFNHSCAPNCWYSGDNLIVAMRDIRKDEHIVYDYAMTETEASLHAGLVCL 137
            ML + V+V+  + YGFEC G+FAK+ +  G +IW Y +  +++  Y K +I A    P K  L+TYSYM  DD +G+T NP  DPS++FNHSC P  WY GD  I   RD++K E + YDYA TETE+S+H GL CL
Sbjct:    1 MLTEVVDVKKFHDYGFECMGLFAKDDLPKGTLIW-YSQDIDVVDIYTKAEILA---HPQKDTLITYSYMRGDDKFGTTLNPSSDPSWYFNHSCDPTTWYEGDERITTCRDVKKGEQLTYDYACTETESSMHYGLQCL 133          
The following BLAST results are available for this feature:
BLAST of EWM28991.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111487|gb|EWM28991.1|1.698e-99100.00nuclear protein set [Nannochloropsis gaditana][more]
gi|857976825|emb|CEO97620.1|2.005e-4555.15hypothetical protein PBRA_000965 [Plasmodiophora b... [more]
gi|673030586|ref|XP_008869254.1|3.254e-4151.82hypothetical protein H310_06108 [Aphanomyces invad... [more]
gi|698787196|ref|XP_009826630.1|6.520e-4151.09hypothetical protein H257_03987 [Aphanomyces astac... [more]
gi|1173941600|gb|OQR90728.1|2.240e-3951.82hypothetical protein ACHHYP_05288 [Achlya hypogyna... [more]
gi|1173949565|gb|OQR97584.1|4.180e-3947.063-deoxy-D-manno-octulosonic acid transferase [Achl... [more]
gi|1173928104|gb|OQR81801.1|4.679e-3951.09hypothetical protein THRCLA_11401 [Thraustotheca c... [more]
gi|813200050|ref|XP_012209596.1|4.128e-3849.64hypothetical protein SPRG_14759 [Saprolegnia paras... [more]
gi|553194460|ref|XP_005855960.1|6.924e-3887.14hypothetical protein NGA_0547300, partial [Nannoch... [more]
gi|813199674|ref|XP_012209408.1|1.292e-3748.91hypothetical protein SPRG_14749 [Saprolegnia paras... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1686rna1686Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications