rna1685, rna1685 (mRNA) Nannochloropsis gaditana

Overview
Namerna1685
Unique Namerna1685
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length264
Alignment locationCM002457.1:1254638..1256288 -

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Properties
Property NameValue
Productnuclear protein set
Orig transcript idgnl|cribi|Naga_100919g1.8314.mrna
Orig protein idgnl|cribi|Naga_100919g1.8314
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1254638..1256288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100919g1gene1622Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1685rna1685-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28994.1cds1681Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1685 ID=rna1685|Name=rna1685|organism=Nannochloropsis gaditana|type=mRNA|length=264bp
ATGTCCTGTTTTGTGAAACCGTTCTTGATCGGCTTATCGCATTTCCATCC
ACAAGCGCACGTTTCGGCCAATCCGCTCACAGACACACGTTGTAAGAGAT
CTGAGTGCTTAGAAGGGGGAAAAAACTGGCGGAGAAGGAGATTCCTTTCG
ACGGAGCGGGGGACCATGTCAGTACCGAAGAACAAGGAAGACCCCAGGTT
TATGACCACGGCATTGGGTTCTATTCGGACTCGTTCACCATTCCTTTTCG
CTGGCCGGCGCTAG
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protein sequence of rna1685

>rna1685-protein ID=rna1685-protein|Name=rna1685|organism=Nannochloropsis gaditana|type=polypeptide|length=233bp
MADSTSVIAIRNIAAGEEITIDYATVNSGLNTSEGDNFTCRCQARDCRGL
VTSRDWMLPKVQEKYWPHFPPFVRRLILSQAPRPGSVRRNGGASGPSATG
QRPGRRERHSRGNKGRRRNEERGGNFVAFETPKAGVKDKRCGAERGRTTV
CSRMVLLPSIPPLAKTGRKQARTTQHQIRYQGPTTSCALRKAHFSQDFSV
SLIKENHVCGATPCLYRGSGGSKCICFGQSEHP
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mRNA from alignment at CM002457.1:1254638..1256288-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1685 ID=rna1685|Name=rna1685|organism=Nannochloropsis gaditana|type=mRNA|length=1651bp|location=Sequence derived from alignment at CM002457.1:1254638..1256288- (Nannochloropsis gaditana)
ATGGCCGACTCGACGAGCGTCATTGCCATCCGGAACATCGCCGCGGGGGA
GGAGATCACCATCGACTACGCGACGGTCAACAGCGGCTTAAATACCTCCG
AGGGTGACAATTTTACCTGCCGGTGCGTCCGCTTTTCTCATCCTGCCCTG
CCTCCCTCCCTCCCTCCATGCCTACCCCGTCCTCCTCTTCGGAAGTTTTT
ATGACCTTTTCGCGTGTCCCGAGAGGACCGCGGCACCGCATACGCCGTGC
TGCGTTCCTCAGCCTCTTCTTTCCCGCTCTCCCTGCCTCCTTCCCTCCCT
CTCCCCCGCCCTCCGCAGCTGTCAGGCACGTGATTGTCGGGGATTAGTGA
CCAGTCGAGATTGGATGCTCCCGAAAGTGCAAGAAAAGTGAGGAATGCAG
CGGGAGAGAGGGAGGGAATGGAGTGGGAGGAAAAAGGGGAGACATCAGCA
AGGGAGGGGGGGGTGGAATCCGTGAAATGTGGAGGGCCGTGGCGGCAGTG
AGAGAGGAGCACGTCGTTTCGGAAATGATTTGTGCGTGGAATATATCTAT
ATATATACTGGCCTTATCAATATACCCTCCGTCCTTCCCCTTCTCTTCCT
GTAGGTACTGGCCGCATTTCCCACCCTTTGTCCGGCGTTTGATCCTGTCA
CAGGTGACTGCAAGCGGAAAGGAGGGAGGGAGTGAGGGTGGTGGGAAGGA
AGGAGTGATCTACAGCGAAACGAAAGGGATGATTCCGTCCAGCATGTCGA
TTGAAGAGCTGAGTTGAGGCAGACAGCCAGGGAAGGAGGGAGGGAGGGAG
GGAGGTCTGTCGTAGCGAGGATCTCTAATAAGCCGAGAGGGACAACTGGC
TTCCCAAATCATTGCAGTGTAGGCGCAACATAAAAGCATCCATAGTGTCG
TGCAAAGAAAGGGAGAGGGCCGTAGGGGAGGAACACAGGACAGAGAGGGG
ATGTGAGGCGAGAGGGAAGGAGATGGCGAGCAGCGAGGCTGCAGGGGGGG
GAGACGGAGCAAAGTTACGGCTATATCAGATGGCTTCGAAGCCAAGGTCG
GAAAAAATAGATTCTGCCGGTCGGTGGATGTGGCACACAGGCACCAAGGC
CAGGAAGCGTAAGGAGGAACGGCGGAGCCTCGGGACCTTCCGCAACAGGG
CAACGTCCGGGAAGGAGAGAACGTCATTCGAGGGGAAATAAAGGAAGAAG
GAGGAACGAGGAGCGTGGCGGAAATTTCGTGGCCTTCGAGACGCCAAAAG
CAGGTGTCAAGGACAAGCGTTGCGGTGCTGAGAGGGGTCGGACAACGGTG
TGCTCCAGGATGGTGTTGCTGCCGTCCATCCCACCCCTCGCGAAGACAGG
GAGAAAGCAAGCACGTACCACGCAGCACCAGATAAGATATCAGGGTCCGA
CCACATCTTGTGCACTGAGAAAGTAAGGGTAGTCCAGGTGGCGTATGAGG
GGGTATTATCAGGACGTGTGAATGCGTAGAGCTCGTGGCTCGTGTTGTGT
GGAAAAGGGCACCTTTTGCAGGGCGCACTTTTCGCAGGACTTTAGTGTAT
CGCTAATCAAAGAGAATCATGTGTGTGGCGCGACGCCGTGCCTCTATCGT
GGCAGTGGAGGAAGCAAGTGCATCTGTTTTGGACAGAGCGAGCACCCATA
G
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Coding sequence (CDS) from alignment at CM002457.1:1254638..1256288-

>rna1685 ID=rna1685|Name=rna1685|organism=Nannochloropsis gaditana|type=CDS|length=3510bp|location=Sequence derived from alignment at CM002457.1:1254638..1256288- (Nannochloropsis gaditana)
GGCGCACTTTTCGCAGGACTTTAGTGTATCGCTAATCAAAGAGAATCATG
TGTGTGGCGCGACGCCGTGCCTCTATCGTGGCAGTGGAGGAAGCAAGTGC
ATCTGTTTTGGACAGAGCGAGCACCCATAGGCACCAAGGCCAGGAAGCGT
AAGGAGGAACGGCGGAGCCTCGGGACCTTCCGCAACAGGGCAACGTCCGG
GAAGGAGAGAACGTCATTCGAGGGGAAATAAAGGAAGAAGGAGGAACGAG
GAGCGTGGCGGAAATTTCGTGGCCTTCGAGACGCCAAAAGCAGGTGTCAA
GGACAAGCGTTGCGGTGCTGAGAGGGGTCGGACAACGGTGTGCTCCAGGA
TGGTGTTGCTGCCGTCCATCCCACCCCTCGCGAAGACAGGGAGAAAGCAA
GCACGTACCACGCAGCACCAGATAAGATATCAGGGTCCGACCACATCTTG
TGCACTGAGAAAGTACTGGCCGCATTTCCCACCCTTTGTCCGGCGTTTGA
TCCTGTCACAGCTGTCAGGCACGTGATTGTCGGGGATTAGTGACCAGTCG
AGATTGGATGCTCCCGAAAGTGCAAGAAAAATGGCCGACTCGACGAGCGT
CATTGCCATCCGGAACATCGCCGCGGGGGAGGAGATCACCATCGACTACG
CGACGGTCAACAGCGGCTTAAATACCTCCGAGGGTGACAATTTTACCTGC
CGGGCGCACTTTTCGCAGGACTTTAGTGTATCGCTAATCAAAGAGAATCA
TGTGTGTGGCGCGACGCCGTGCCTCTATCGTGGCAGTGGAGGAAGCAAGT
GCATCTGTTTTGGACAGAGCGAGCACCCATAGGCACCAAGGCCAGGAAGC
GTAAGGAGGAACGGCGGAGCCTCGGGACCTTCCGCAACAGGGCAACGTCC
GGGAAGGAGAGAACGTCATTCGAGGGGAAATAAAGGAAGAAGGAGGAACG
AGGAGCGTGGCGGAAATTTCGTGGCCTTCGAGACGCCAAAAGCAGGTGTC
AAGGACAAGCGTTGCGGTGCTGAGAGGGGTCGGACAACGGTGTGCTCCAG
GATGGTGTTGCTGCCGTCCATCCCACCCCTCGCGAAGACAGGGAGAAAGC
AAGCACGTACCACGCAGCACCAGATAAGATATCAGGGTCCGACCACATCT
TGTGCACTGAGAAAGTACTGGCCGCATTTCCCACCCTTTGTCCGGCGTTT
GATCCTGTCACAGCTGTCAGGCACGTGATTGTCGGGGATTAGTGACCAGT
CGAGATTGGATGCTCCCGAAAGTGCAAGAAAAATGGCCGACTCGACGAGC
GTCATTGCCATCCGGAACATCGCCGCGGGGGAGGAGATCACCATCGACTA
CGCGACGGTCAACAGCGGCTTAAATACCTCCGAGGGTGACAATTTTACCT
GCCGGGCGCACTTTTCGCAGGACTTTAGTGTATCGCTAATCAAAGAGAAT
CATGTGTGTGGCGCGACGCCGTGCCTCTATCGTGGCAGTGGAGGAAGCAA
GTGCATCTGTTTTGGACAGAGCGAGCACCCATAGGCACCAAGGCCAGGAA
GCGTAAGGAGGAACGGCGGAGCCTCGGGACCTTCCGCAACAGGGCAACGT
CCGGGAAGGAGAGAACGTCATTCGAGGGGAAATAAAGGAAGAAGGAGGAA
CGAGGAGCGTGGCGGAAATTTCGTGGCCTTCGAGACGCCAAAAGCAGGTG
TCAAGGACAAGCGTTGCGGTGCTGAGAGGGGTCGGACAACGGTGTGCTCC
AGGATGGTGTTGCTGCCGTCCATCCCACCCCTCGCGAAGACAGGGAGAAA
GCAAGCACGTACCACGCAGCACCAGATAAGATATCAGGGTCCGACCACAT
CTTGTGCACTGAGAAAGTACTGGCCGCATTTCCCACCCTTTGTCCGGCGT
TTGATCCTGTCACAGCTGTCAGGCACGTGATTGTCGGGGATTAGTGACCA
GTCGAGATTGGATGCTCCCGAAAGTGCAAGAAAAATGGCCGACTCGACGA
GCGTCATTGCCATCCGGAACATCGCCGCGGGGGAGGAGATCACCATCGAC
TACGCGACGGTCAACAGCGGCTTAAATACCTCCGAGGGTGACAATTTTAC
CTGCCGGGCGCACTTTTCGCAGGACTTTAGTGTATCGCTAATCAAAGAGA
ATCATGTGTGTGGCGCGACGCCGTGCCTCTATCGTGGCAGTGGAGGAAGC
AAGTGCATCTGTTTTGGACAGAGCGAGCACCCATAGGCACCAAGGCCAGG
AAGCGTAAGGAGGAACGGCGGAGCCTCGGGACCTTCCGCAACAGGGCAAC
GTCCGGGAAGGAGAGAACGTCATTCGAGGGGAAATAAAGGAAGAAGGAGG
AACGAGGAGCGTGGCGGAAATTTCGTGGCCTTCGAGACGCCAAAAGCAGG
TGTCAAGGACAAGCGTTGCGGTGCTGAGAGGGGTCGGACAACGGTGTGCT
CCAGGATGGTGTTGCTGCCGTCCATCCCACCCCTCGCGAAGACAGGGAGA
AAGCAAGCACGTACCACGCAGCACCAGATAAGATATCAGGGTCCGACCAC
ATCTTGTGCACTGAGAAAGTACTGGCCGCATTTCCCACCCTTTGTCCGGC
GTTTGATCCTGTCACAGCTGTCAGGCACGTGATTGTCGGGGATTAGTGAC
CAGTCGAGATTGGATGCTCCCGAAAGTGCAAGAAAAATGGCCGACTCGAC
GAGCGTCATTGCCATCCGGAACATCGCCGCGGGGGAGGAGATCACCATCG
ACTACGCGACGGTCAACAGCGGCTTAAATACCTCCGAGGGTGACAATTTT
ACCTGCCGGGCGCACTTTTCGCAGGACTTTAGTGTATCGCTAATCAAAGA
GAATCATGTGTGTGGCGCGACGCCGTGCCTCTATCGTGGCAGTGGAGGAA
GCAAGTGCATCTGTTTTGGACAGAGCGAGCACCCATAGGCACCAAGGCCA
GGAAGCGTAAGGAGGAACGGCGGAGCCTCGGGACCTTCCGCAACAGGGCA
ACGTCCGGGAAGGAGAGAACGTCATTCGAGGGGAAATAAAGGAAGAAGGA
GGAACGAGGAGCGTGGCGGAAATTTCGTGGCCTTCGAGACGCCAAAAGCA
GGTGTCAAGGACAAGCGTTGCGGTGCTGAGAGGGGTCGGACAACGGTGTG
CTCCAGGATGGTGTTGCTGCCGTCCATCCCACCCCTCGCGAAGACAGGGA
GAAAGCAAGCACGTACCACGCAGCACCAGATAAGATATCAGGGTCCGACC
ACATCTTGTGCACTGAGAAAGTACTGGCCGCATTTCCCACCCTTTGTCCG
GCGTTTGATCCTGTCACAGCTGTCAGGCACGTGATTGTCGGGGATTAGTG
ACCAGTCGAGATTGGATGCTCCCGAAAGTGCAAGAAAAATGGCCGACTCG
ACGAGCGTCATTGCCATCCGGAACATCGCCGCGGGGGAGGAGATCACCAT
CGACTACGCGACGGTCAACAGCGGCTTAAATACCTCCGAGGGTGACAATT
TTACCTGCCG
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Synonyms
Publications