EWM28994.1, cds1681 (CDS) Nannochloropsis gaditana

Overview
NameEWM28994.1
Unique Namecds1681
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1256167..1256288 -
Alignment locationCM002457.1:1255902..1255970 -
Alignment locationCM002457.1:1255636..1255684 -
Alignment locationCM002457.1:1254867..1255198 -
Alignment locationCM002457.1:1254638..1254767 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28994.1
Productnuclear protein set
Orig transcript idgnl|cribi|Naga_100919g1.8314.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1256167..1256288 -
CM002457.1supercontigCM002457.1:1255902..1255970 -
CM002457.1supercontigCM002457.1:1255636..1255684 -
CM002457.1supercontigCM002457.1:1254867..1255198 -
CM002457.1supercontigCM002457.1:1254638..1254767 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM28994.1 vs. NCBI_GenBank
Match: gi|585111492|gb|EWM28994.1| (nuclear protein set [Nannochloropsis gaditana])

HSP 1 Score: 481.871 bits (1239), Expect = 3.087e-172
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0
Query:    1 MADSTSVIAIRNIAAGEEITIDYATVNSGLNTSEGDNFTCRCQARDCRGLVTSRDWMLPKVQEKYWPHFPPFVRRLILSQAPRPGSVRRNGGASGPSATGQRPGRRERHSRGNKGRRRNEERGGNFVAFETPKAGVKDKRCGAERGRTTVCSRMVLLPSIPPLAKTGRKQARTTQHQIRYQGPTTSCALRKAHFSQDFSVSLIKENHVCGATPCLYRGSGGSKCICFGQSEHP 233
            MADSTSVIAIRNIAAGEEITIDYATVNSGLNTSEGDNFTCRCQARDCRGLVTSRDWMLPKVQEKYWPHFPPFVRRLILSQAPRPGSVRRNGGASGPSATGQRPGRRERHSRGNKGRRRNEERGGNFVAFETPKAGVKDKRCGAERGRTTVCSRMVLLPSIPPLAKTGRKQARTTQHQIRYQGPTTSCALRKAHFSQDFSVSLIKENHVCGATPCLYRGSGGSKCICFGQSEHP
Sbjct:    1 MADSTSVIAIRNIAAGEEITIDYATVNSGLNTSEGDNFTCRCQARDCRGLVTSRDWMLPKVQEKYWPHFPPFVRRLILSQAPRPGSVRRNGGASGPSATGQRPGRRERHSRGNKGRRRNEERGGNFVAFETPKAGVKDKRCGAERGRTTVCSRMVLLPSIPPLAKTGRKQARTTQHQIRYQGPTTSCALRKAHFSQDFSVSLIKENHVCGATPCLYRGSGGSKCICFGQSEHP 233          
BLAST of EWM28994.1 vs. NCBI_GenBank
Match: gi|553177502|ref|XP_005852471.1| (hypothetical protein NGA_0547902 [Nannochloropsis gaditana CCMP526] >gi|553194483|ref|XP_005855966.1| hypothetical protein NGA_0547901 [Nannochloropsis gaditana CCMP526] >gi|422293109|gb|EKU20409.1| hypothetical protein NGA_0547901 [Nannochloropsis gaditana CCMP526] >gi|422296062|gb|EKU23361.1| hypothetical protein NGA_0547902 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 112.464 bits (280), Expect = 1.741e-28
Identity = 57/81 (70.37%), Postives = 57/81 (70.37%), Query Frame = 0
Query:    1 MADSTSVIAIRNIAAGEEITIDYATVNSGLNTSEGDNFTCRCQARDCRGLVTSRDWMLPKVQEKYWPHFPPFVRRLILSQA 81
            MADSTSVIAIRNIAAGEEITIDYATVNSGLNTSEGDNFTCR                       YWPHFPPFVRRLILSQ 
Sbjct:    1 MADSTSVIAIRNIAAGEEITIDYATVNSGLNTSEGDNFTCR-----------------------YWPHFPPFVRRLILSQV 58          
BLAST of EWM28994.1 vs. NCBI_GenBank
Match: gi|857976825|emb|CEO97620.1| (hypothetical protein PBRA_000965 [Plasmodiophora brassicae])

HSP 1 Score: 98.9821 bits (245), Expect = 1.115e-20
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 0
Query:    1 MADSTSVIAIRNIAAGEEITIDYATVNSGLNTSEGDNFTCRCQARDCRGLVTSRDWMLPKVQEKYWPHFPPFVRRLILSQ 80
            M DS +V+AIR+I  GEEITIDYA VN GL T   DNF C C +  CRG +TS DW +P++Q +Y  +F PF+R+LI  Q
Sbjct:  271 MLDSVTVVAIRDIQEGEEITIDYAMVNDGLITEPSDNFVCSCNSSICRGKITSSDWRIPELQRRYGDYFSPFMRQLIKQQ 350          
BLAST of EWM28994.1 vs. NCBI_GenBank
Match: gi|1173941600|gb|OQR90728.1| (hypothetical protein ACHHYP_05288 [Achlya hypogyna])

HSP 1 Score: 93.2041 bits (230), Expect = 1.139e-18
Identity = 43/84 (51.19%), Postives = 54/84 (64.29%), Query Frame = 0
Query:    1 MADSTSVIAIRNIAAGEEITIDYATVNSGLNTSEGDNFTCRCQARDCRGLVTSRDWMLPKVQEKYWPHFPPFVRRLILSQAPRP 84
            M DS +V AIR+I  G+EITIDYA VN G    E DNF C+C + +CRG +TS+DW LP+V  +   HF PFV+ L L     P
Sbjct:  270 MKDSVTVHAIRDIYPGDEITIDYAMVNDGSMQQESDNFDCQCGSANCRGRITSKDWRLPEVYSRLGEHFSPFVKELALRSTETP 353          
BLAST of EWM28994.1 vs. NCBI_GenBank
Match: gi|813200050|ref|XP_012209596.1| (hypothetical protein SPRG_14759 [Saprolegnia parasitica CBS 223.65] >gi|641525196|gb|KDO19679.1| hypothetical protein SPRG_14759 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 92.4337 bits (228), Expect = 1.739e-18
Identity = 43/84 (51.19%), Postives = 54/84 (64.29%), Query Frame = 0
Query:    1 MADSTSVIAIRNIAAGEEITIDYATVNSGLNTSEGDNFTCRCQARDCRGLVTSRDWMLPKVQEKYWPHFPPFVRRLILSQAPRP 84
            M DS +V AIR+I  G+EITIDYA VN G    E DNF C+C +  CRG +TS DW LP+V+ +   HF PFV+ L+L     P
Sbjct:  270 MKDSVTVHAIRDIYPGDEITIDYAMVNDGSMEQESDNFDCQCGSASCRGRITSTDWRLPEVRSRLGEHFSPFVKELVLRAQETP 353          
BLAST of EWM28994.1 vs. NCBI_GenBank
Match: gi|813199674|ref|XP_012209408.1| (hypothetical protein SPRG_14749 [Saprolegnia parasitica CBS 223.65] >gi|641525449|gb|KDO19906.1| hypothetical protein SPRG_14749 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 92.4337 bits (228), Expect = 1.793e-18
Identity = 43/84 (51.19%), Postives = 54/84 (64.29%), Query Frame = 0
Query:    1 MADSTSVIAIRNIAAGEEITIDYATVNSGLNTSEGDNFTCRCQARDCRGLVTSRDWMLPKVQEKYWPHFPPFVRRLILSQAPRP 84
            M DS +V AIR+I  G+EITIDYA VN G    E DNF C+C +  CRG +TS DW LP+V+ +   HF PFV+ L+L     P
Sbjct:  270 MKDSVTVHAIRDIYPGDEITIDYAMVNDGSMEQESDNFDCQCGSASCRGRITSTDWRLPEVRSRLGEHFSPFVKELVLRAQETP 353          
BLAST of EWM28994.1 vs. NCBI_GenBank
Match: gi|813102495|ref|XP_012193837.1| (hypothetical protein SPRG_00347 [Saprolegnia parasitica CBS 223.65] >gi|641541755|gb|KDO35500.1| hypothetical protein SPRG_00347 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 93.9745 bits (232), Expect = 2.068e-18
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 0
Query:    1 MADSTSVIAIRNIAAGEEITIDYATVNSGLNTSEGDNFTCRCQARDCRGLVTSRDWMLPKVQEKYWPHFPPFVRRLI 77
            M DS +VIAIR++  G+EITIDY  VN G N    DNF C C + +CRG +T+ DW LP++Q +  P+F PFV+ LI
Sbjct:  271 MQDSVTVIAIRDVHPGDEITIDYCMVNDGCNDEPSDNFMCNCGSANCRGEITTLDWQLPELQSRLGPYFAPFVKHLI 347          
BLAST of EWM28994.1 vs. NCBI_GenBank
Match: gi|1173949565|gb|OQR97584.1| (3-deoxy-D-manno-octulosonic acid transferase [Achlya hypogyna])

HSP 1 Score: 93.2041 bits (230), Expect = 3.527e-18
Identity = 42/79 (53.16%), Postives = 54/79 (68.35%), Query Frame = 0
Query:    1 MADSTSVIAIRNIAAGEEITIDYATVNSGLNTSEGDNFTCRCQARDCRGLVTSRDWMLPKVQEKYWPHFPPFVRRLILS 79
            M DS +V AIR+I  GEEITIDY  VN G+N    DNF C C + +CR  +T+ DW LP++Q +  P+F PFV+RLI S
Sbjct:  271 MHDSVTVKAIRDIYPGEEITIDYCMVNDGVNDEPSDNFVCNCGSSNCRREITTLDWQLPELQSRLGPYFAPFVKRLIES 349          
BLAST of EWM28994.1 vs. NCBI_GenBank
Match: gi|1173928104|gb|OQR81801.1| (hypothetical protein THRCLA_11401 [Thraustotheca clavata])

HSP 1 Score: 91.6633 bits (226), Expect = 4.014e-18
Identity = 42/77 (54.55%), Postives = 51/77 (66.23%), Query Frame = 0
Query:    1 MADSTSVIAIRNIAAGEEITIDYATVNSGLNTSEGDNFTCRCQARDCRGLVTSRDWMLPKVQEKYWPHFPPFVRRLI 77
            M DS +V+AIR+I  G+EITIDYA VN G    E DNF C C   +CRG +TS DW LP+V  +   HF PFV+ LI
Sbjct:  270 MKDSVTVMAIRDIYPGDEITIDYAMVNDGSMQQESDNFECACGCANCRGRITSTDWRLPEVHTRLGEHFSPFVKELI 346          
BLAST of EWM28994.1 vs. NCBI_GenBank
Match: gi|669143690|ref|XP_008607407.1| (hypothetical protein SDRG_03550 [Saprolegnia diclina VS20] >gi|530741104|gb|EQC39346.1| hypothetical protein SDRG_03550 [Saprolegnia diclina VS20])

HSP 1 Score: 90.5077 bits (223), Expect = 1.176e-17
Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 0
Query:    1 MADSTSVIAIRNIAAGEEITIDYATVNSGLNTSEGDNFTCRCQARDCRGLVTSRDWMLPKVQEKYWPHFPPFVRRLI 77
            M DS +VIAIR++  G+EITIDY  VN G N    DNF C C + +CR  +T+ DW LP++Q +  P+F PFV+ LI
Sbjct:  271 MQDSVTVIAIRDVYPGDEITIDYCMVNDGCNDEPSDNFMCNCGSANCRREITTLDWQLPELQSRLGPYFAPFVKHLI 347          
The following BLAST results are available for this feature:
BLAST of EWM28994.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111492|gb|EWM28994.1|3.087e-172100.00nuclear protein set [Nannochloropsis gaditana][more]
gi|553177502|ref|XP_005852471.1|1.741e-2870.37hypothetical protein NGA_0547902 [Nannochloropsis ... [more]
gi|857976825|emb|CEO97620.1|1.115e-2055.00hypothetical protein PBRA_000965 [Plasmodiophora b... [more]
gi|1173941600|gb|OQR90728.1|1.139e-1851.19hypothetical protein ACHHYP_05288 [Achlya hypogyna... [more]
gi|813200050|ref|XP_012209596.1|1.739e-1851.19hypothetical protein SPRG_14759 [Saprolegnia paras... [more]
gi|813199674|ref|XP_012209408.1|1.793e-1851.19hypothetical protein SPRG_14749 [Saprolegnia paras... [more]
gi|813102495|ref|XP_012193837.1|2.068e-1851.95hypothetical protein SPRG_00347 [Saprolegnia paras... [more]
gi|1173949565|gb|OQR97584.1|3.527e-1853.163-deoxy-D-manno-octulosonic acid transferase [Achl... [more]
gi|1173928104|gb|OQR81801.1|4.014e-1854.55hypothetical protein THRCLA_11401 [Thraustotheca c... [more]
gi|669143690|ref|XP_008607407.1|1.176e-1750.65hypothetical protein SDRG_03550 [Saprolegnia dicli... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1685rna1685Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications