EWM28994.1, cds1681 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM28994.1 vs. NCBI_GenBank
Match: gi|585111492|gb|EWM28994.1| (nuclear protein set [Nannochloropsis gaditana]) HSP 1 Score: 481.871 bits (1239), Expect = 3.087e-172 Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0 Query: 1 MADSTSVIAIRNIAAGEEITIDYATVNSGLNTSEGDNFTCRCQARDCRGLVTSRDWMLPKVQEKYWPHFPPFVRRLILSQAPRPGSVRRNGGASGPSATGQRPGRRERHSRGNKGRRRNEERGGNFVAFETPKAGVKDKRCGAERGRTTVCSRMVLLPSIPPLAKTGRKQARTTQHQIRYQGPTTSCALRKAHFSQDFSVSLIKENHVCGATPCLYRGSGGSKCICFGQSEHP 233 MADSTSVIAIRNIAAGEEITIDYATVNSGLNTSEGDNFTCRCQARDCRGLVTSRDWMLPKVQEKYWPHFPPFVRRLILSQAPRPGSVRRNGGASGPSATGQRPGRRERHSRGNKGRRRNEERGGNFVAFETPKAGVKDKRCGAERGRTTVCSRMVLLPSIPPLAKTGRKQARTTQHQIRYQGPTTSCALRKAHFSQDFSVSLIKENHVCGATPCLYRGSGGSKCICFGQSEHP Sbjct: 1 MADSTSVIAIRNIAAGEEITIDYATVNSGLNTSEGDNFTCRCQARDCRGLVTSRDWMLPKVQEKYWPHFPPFVRRLILSQAPRPGSVRRNGGASGPSATGQRPGRRERHSRGNKGRRRNEERGGNFVAFETPKAGVKDKRCGAERGRTTVCSRMVLLPSIPPLAKTGRKQARTTQHQIRYQGPTTSCALRKAHFSQDFSVSLIKENHVCGATPCLYRGSGGSKCICFGQSEHP 233
BLAST of EWM28994.1 vs. NCBI_GenBank
Match: gi|553177502|ref|XP_005852471.1| (hypothetical protein NGA_0547902 [Nannochloropsis gaditana CCMP526] >gi|553194483|ref|XP_005855966.1| hypothetical protein NGA_0547901 [Nannochloropsis gaditana CCMP526] >gi|422293109|gb|EKU20409.1| hypothetical protein NGA_0547901 [Nannochloropsis gaditana CCMP526] >gi|422296062|gb|EKU23361.1| hypothetical protein NGA_0547902 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 112.464 bits (280), Expect = 1.741e-28 Identity = 57/81 (70.37%), Postives = 57/81 (70.37%), Query Frame = 0 Query: 1 MADSTSVIAIRNIAAGEEITIDYATVNSGLNTSEGDNFTCRCQARDCRGLVTSRDWMLPKVQEKYWPHFPPFVRRLILSQA 81 MADSTSVIAIRNIAAGEEITIDYATVNSGLNTSEGDNFTCR YWPHFPPFVRRLILSQ Sbjct: 1 MADSTSVIAIRNIAAGEEITIDYATVNSGLNTSEGDNFTCR-----------------------YWPHFPPFVRRLILSQV 58
BLAST of EWM28994.1 vs. NCBI_GenBank
Match: gi|857976825|emb|CEO97620.1| (hypothetical protein PBRA_000965 [Plasmodiophora brassicae]) HSP 1 Score: 98.9821 bits (245), Expect = 1.115e-20 Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 0 Query: 1 MADSTSVIAIRNIAAGEEITIDYATVNSGLNTSEGDNFTCRCQARDCRGLVTSRDWMLPKVQEKYWPHFPPFVRRLILSQ 80 M DS +V+AIR+I GEEITIDYA VN GL T DNF C C + CRG +TS DW +P++Q +Y +F PF+R+LI Q Sbjct: 271 MLDSVTVVAIRDIQEGEEITIDYAMVNDGLITEPSDNFVCSCNSSICRGKITSSDWRIPELQRRYGDYFSPFMRQLIKQQ 350
BLAST of EWM28994.1 vs. NCBI_GenBank
Match: gi|1173941600|gb|OQR90728.1| (hypothetical protein ACHHYP_05288 [Achlya hypogyna]) HSP 1 Score: 93.2041 bits (230), Expect = 1.139e-18 Identity = 43/84 (51.19%), Postives = 54/84 (64.29%), Query Frame = 0 Query: 1 MADSTSVIAIRNIAAGEEITIDYATVNSGLNTSEGDNFTCRCQARDCRGLVTSRDWMLPKVQEKYWPHFPPFVRRLILSQAPRP 84 M DS +V AIR+I G+EITIDYA VN G E DNF C+C + +CRG +TS+DW LP+V + HF PFV+ L L P Sbjct: 270 MKDSVTVHAIRDIYPGDEITIDYAMVNDGSMQQESDNFDCQCGSANCRGRITSKDWRLPEVYSRLGEHFSPFVKELALRSTETP 353
BLAST of EWM28994.1 vs. NCBI_GenBank
Match: gi|813200050|ref|XP_012209596.1| (hypothetical protein SPRG_14759 [Saprolegnia parasitica CBS 223.65] >gi|641525196|gb|KDO19679.1| hypothetical protein SPRG_14759 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 92.4337 bits (228), Expect = 1.739e-18 Identity = 43/84 (51.19%), Postives = 54/84 (64.29%), Query Frame = 0 Query: 1 MADSTSVIAIRNIAAGEEITIDYATVNSGLNTSEGDNFTCRCQARDCRGLVTSRDWMLPKVQEKYWPHFPPFVRRLILSQAPRP 84 M DS +V AIR+I G+EITIDYA VN G E DNF C+C + CRG +TS DW LP+V+ + HF PFV+ L+L P Sbjct: 270 MKDSVTVHAIRDIYPGDEITIDYAMVNDGSMEQESDNFDCQCGSASCRGRITSTDWRLPEVRSRLGEHFSPFVKELVLRAQETP 353
BLAST of EWM28994.1 vs. NCBI_GenBank
Match: gi|813199674|ref|XP_012209408.1| (hypothetical protein SPRG_14749 [Saprolegnia parasitica CBS 223.65] >gi|641525449|gb|KDO19906.1| hypothetical protein SPRG_14749 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 92.4337 bits (228), Expect = 1.793e-18 Identity = 43/84 (51.19%), Postives = 54/84 (64.29%), Query Frame = 0 Query: 1 MADSTSVIAIRNIAAGEEITIDYATVNSGLNTSEGDNFTCRCQARDCRGLVTSRDWMLPKVQEKYWPHFPPFVRRLILSQAPRP 84 M DS +V AIR+I G+EITIDYA VN G E DNF C+C + CRG +TS DW LP+V+ + HF PFV+ L+L P Sbjct: 270 MKDSVTVHAIRDIYPGDEITIDYAMVNDGSMEQESDNFDCQCGSASCRGRITSTDWRLPEVRSRLGEHFSPFVKELVLRAQETP 353
BLAST of EWM28994.1 vs. NCBI_GenBank
Match: gi|813102495|ref|XP_012193837.1| (hypothetical protein SPRG_00347 [Saprolegnia parasitica CBS 223.65] >gi|641541755|gb|KDO35500.1| hypothetical protein SPRG_00347 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 93.9745 bits (232), Expect = 2.068e-18 Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 0 Query: 1 MADSTSVIAIRNIAAGEEITIDYATVNSGLNTSEGDNFTCRCQARDCRGLVTSRDWMLPKVQEKYWPHFPPFVRRLI 77 M DS +VIAIR++ G+EITIDY VN G N DNF C C + +CRG +T+ DW LP++Q + P+F PFV+ LI Sbjct: 271 MQDSVTVIAIRDVHPGDEITIDYCMVNDGCNDEPSDNFMCNCGSANCRGEITTLDWQLPELQSRLGPYFAPFVKHLI 347
BLAST of EWM28994.1 vs. NCBI_GenBank
Match: gi|1173949565|gb|OQR97584.1| (3-deoxy-D-manno-octulosonic acid transferase [Achlya hypogyna]) HSP 1 Score: 93.2041 bits (230), Expect = 3.527e-18 Identity = 42/79 (53.16%), Postives = 54/79 (68.35%), Query Frame = 0 Query: 1 MADSTSVIAIRNIAAGEEITIDYATVNSGLNTSEGDNFTCRCQARDCRGLVTSRDWMLPKVQEKYWPHFPPFVRRLILS 79 M DS +V AIR+I GEEITIDY VN G+N DNF C C + +CR +T+ DW LP++Q + P+F PFV+RLI S Sbjct: 271 MHDSVTVKAIRDIYPGEEITIDYCMVNDGVNDEPSDNFVCNCGSSNCRREITTLDWQLPELQSRLGPYFAPFVKRLIES 349
BLAST of EWM28994.1 vs. NCBI_GenBank
Match: gi|1173928104|gb|OQR81801.1| (hypothetical protein THRCLA_11401 [Thraustotheca clavata]) HSP 1 Score: 91.6633 bits (226), Expect = 4.014e-18 Identity = 42/77 (54.55%), Postives = 51/77 (66.23%), Query Frame = 0 Query: 1 MADSTSVIAIRNIAAGEEITIDYATVNSGLNTSEGDNFTCRCQARDCRGLVTSRDWMLPKVQEKYWPHFPPFVRRLI 77 M DS +V+AIR+I G+EITIDYA VN G E DNF C C +CRG +TS DW LP+V + HF PFV+ LI Sbjct: 270 MKDSVTVMAIRDIYPGDEITIDYAMVNDGSMQQESDNFECACGCANCRGRITSTDWRLPEVHTRLGEHFSPFVKELI 346
BLAST of EWM28994.1 vs. NCBI_GenBank
Match: gi|669143690|ref|XP_008607407.1| (hypothetical protein SDRG_03550 [Saprolegnia diclina VS20] >gi|530741104|gb|EQC39346.1| hypothetical protein SDRG_03550 [Saprolegnia diclina VS20]) HSP 1 Score: 90.5077 bits (223), Expect = 1.176e-17 Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 0 Query: 1 MADSTSVIAIRNIAAGEEITIDYATVNSGLNTSEGDNFTCRCQARDCRGLVTSRDWMLPKVQEKYWPHFPPFVRRLI 77 M DS +VIAIR++ G+EITIDY VN G N DNF C C + +CR +T+ DW LP++Q + P+F PFV+ LI Sbjct: 271 MQDSVTVIAIRDVYPGDEITIDYCMVNDGCNDEPSDNFMCNCGSANCRREITTLDWQLPELQSRLGPYFAPFVKHLI 347 The following BLAST results are available for this feature:
BLAST of EWM28994.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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