rna1684, rna1684 (mRNA) Nannochloropsis gaditana

Overview
Namerna1684
Unique Namerna1684
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1094
Alignment locationCM002457.1:1254020..1254283 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100919g2.8312.mrna
Orig protein idgnl|cribi|Naga_100919g2.8312
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1254020..1254283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100919g2gene1621Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1684rna1684-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28992.1cds1680Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1684 ID=rna1684|Name=rna1684|organism=Nannochloropsis gaditana|type=mRNA|length=1094bp
CTTGAGAAAATCGCTGTCCCTGACCCAAAAGCACAAATGGCTGCAGAGGA
TTGATTGTGGGAGCCGCAGTCGGCGCGCAAGTCGCGGCTCTTTTGACTTT
CGAGTACCGCACTTTTACAGTGGCGAAGTTGGCCAGCGGCGTGATGCAAA
AGGCGTCTGTAGCATTCACTTGATAAGCGAAAGCGTCCACCACTAACGTC
TCAGGGGCACACTCGTCCGCCTTTACCTTGACGCGAAAGCGGCGCTTCCC
CCCCTTGCTTTTGGTGAAATCGATACCAAGCCAGTAAATGACAGTCGCTC
CATCCGTATTCTCAAGGACTTGCGCTGGCGCATAGAGCTTTGAGAACGCA
TGGTTCGCTATTTTCTCTACTGATAAGCCATTTGGCAGCTTCAACTGGAA
CTCCAGATTGTCGACGGGACCTTCACTACTCAGCGTGACGGTGATTTTGG
CAAGGCCCTTCCCAGCAAGGATCCCACGATTAGCACTAGGCCTTGCTTTG
GCCTTGAGAGAAAGCCGCGGACATTCTTGTGAGACAGTGATGAGCATGCT
TGCCAAGCCCAGGAGGGCGACAAGGAGGATACTCGAGGAAAATCTCATAC
TGAAATGCGCTGAATCTGTGCTTGAATGATAGCCTGTAGTGGGTTTGGGA
GAGAAAGCGGAAACAAAGATCTTGGGCTTTGAAGCAGTTTATGGTGTCAG
TCAAGAAGCACACGACCATCGAAACTCATGGCCCTGTTTTTACTTCTTCA
TTTTTCAGAGCTGCGGAGTGCTGTGTCAAGCACAATCAAGGAGCAAAGCA
AAACTCGAGACTTGTCAGACACAAGCATAAGGGAGCCTGAAGCGCAGCCC
AAATCGCGAGAGACTCTCTGTGAAGAGGATGAAAAACAACACATACAAGC
AATCTCTTTACATAGCTCGCCTTCAAGCTTCCGTATAGAAATGTCCAAAA
GACTTCCAAAGTGTCTCGAAAGTATTAAGTGCTCGGTGTCGAAAGCAGGC
GATAATAACCCCTTCAGCCGGACTACAATCATGTATTGATAGCAGAAAAA
CTAAACGGATATGTACGAGAAAACAAAGATATGACTTTAAAAAA
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protein sequence of rna1684

>rna1684-protein ID=rna1684-protein|Name=rna1684|organism=Nannochloropsis gaditana|type=polypeptide|length=87bp
MSCFVKPFLIGLSHFHPQAHVSANPLTDTRCKRSECLEGGKNWRRRRFLS
TERGTMSVPKNKEDPRFMTTALGSIRTRSPFLFAGRR
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mRNA from alignment at CM002457.1:1254020..1254283+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1684 ID=rna1684|Name=rna1684|organism=Nannochloropsis gaditana|type=mRNA|length=264bp|location=Sequence derived from alignment at CM002457.1:1254020..1254283+ (Nannochloropsis gaditana)
ATGTCCTGTTTTGTGAAACCGTTCTTGATCGGCTTATCGCATTTCCATCC
ACAAGCGCACGTTTCGGCCAATCCGCTCACAGACACACGTTGTAAGAGAT
CTGAGTGCTtagaagggggaaaaaactggcggagaaggagattcCTTTCG
ACGGAGCGGGGGACCATGTCAGTACCGAAGAACAAGGAAGACCCCAGGTT
TATGACCACGGCATTGGGTTCTATTCGGACTCGTTCACCATTCCTTTTCG
CTGGCCGGCGCTAG
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Coding sequence (CDS) from alignment at CM002457.1:1254020..1254283+

>rna1684 ID=rna1684|Name=rna1684|organism=Nannochloropsis gaditana|type=CDS|length=264bp|location=Sequence derived from alignment at CM002457.1:1254020..1254283+ (Nannochloropsis gaditana)
ATGTCCTGTTTTGTGAAACCGTTCTTGATCGGCTTATCGCATTTCCATCC
ACAAGCGCACGTTTCGGCCAATCCGCTCACAGACACACGTTGTAAGAGAT
CTGAGTGCTtagaagggggaaaaaactggcggagaaggagattcCTTTCG
ACGGAGCGGGGGACCATGTCAGTACCGAAGAACAAGGAAGACCCCAGGTT
TATGACCACGGCATTGGGTTCTATTCGGACTCGTTCACCATTCCTTTTCG
CTGGCCGGCGCTAG
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Synonyms
Publications