rna1677, rna1677 (mRNA) Nannochloropsis gaditana

Overview
Namerna1677
Unique Namerna1677
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1414
Alignment locationCM002457.1:1241126..1242105 +

Link to JBrowse

Properties
Property NameValue
Productpterin-4-alpha-carbinolamine dehydratase
Orig transcript idgnl|cribi|Naga_100373g9.5926.mrna
Orig protein idgnl|cribi|Naga_100373g9.5926
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1241126..1242105 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100373g9gene1615Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1677rna1677-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29000.1cds1673Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1677 ID=rna1677|Name=rna1677|organism=Nannochloropsis gaditana|type=mRNA|length=1414bp
CTCACGCGTCGACAGGAATGTCTGGGCCCAGCTCCTTCCCCCCCTCTCCC
CCCCCCAATACTTGAGGGAGAAATATGCATTGTTCACGTTTACATGTGAG
CAAATGCTGCTGGTACTGCAAACTCAAAACATTCAGCGGGATACGATGAA
CTGCGTCATGGTCCTGAATCATCCCCCGTTCCCGTCTACCTCTTCCCCTT
GCTCATCTCACATTTCCTCCGTTCCATCCCGCCATCTCTGTCATGCCCAT
TGACTCAGTTTATTTGACACCTTTCGCGGCGTCATCAGTATGGGGAAACC
CACTGCTGTAAAGCTGCGGAGATGGAGGATGTGTTAGCTTCGGCTGACGC
CGGCCACCTGGACCGCACACATTCAGCACCTCCTTCCACATTCATCACCA
CTTCAAGCTCCCTTCCCATCAACTGCCCCTTTTTCGACCGGCATCAACTC
CATCCAATCGCCAACAACGCCAGCATCAGTGCACCCTTTGCGCACTGACA
TAGATTCTCGCAATCACACCCATCCGTCGTCATCGCCTCCTTCCTTCCGC
ATCTGGCATGGAACCCCCTCAGGGTGCCGAGCCCGCCATGTCGTTGGACG
AGTCGAACGGGAGCCACCAGGCCACCGCTTCCAACCTACCCCGTCGGGGA
GGTCTGACTCAGAACTCGCACAACCACAGCCTGGCTTCCTTTGCCTCCCA
CGAAGGCTTGCCAACCGGTGAGGCTGGGGGCGGTGCCGGGAAGCGCGGGA
TGATTGGAGGGCATGCTGCGTCCACGGCGGTGGCGGTCGTGCCCGTGGGG
AAAGATGGCGTGGTCGAGCACAGTCCTCAAGGACGCTACGTGCGTTTTAA
TACCCGCCTAGATGCCTGCGCCTACAAGGAAATATGGAAGGCTTTCGACA
CGAGCGAAGGGGTGGAGGTGGCTTGGAATACCCTCTTCCTTGAGGAAGTC
CCCCGCTCGGACAAGAAACGGATTCTGAACGAGATCCGCATCCTGGAAAA
AATCGACCACGACAACATCATCACCTTCTACACCTCCTGGTATAACCGGC
ACACCAAGCAGATCGTCTTCATCACCGAGCTCATGAACAACCACAACAAC
GGCTCTCTCTACGCCTTTGTCCAACCCATTCCCATCCTCCGGTGGAGGAT
CGTCAAGCGTTGGCTCCGCCAGATCTTGGAGGGGCTGGCCTTCCTGCACT
CTCAGGACCCCCCTATCATCCACCGAAACATCAACTGTGAGAACATTTTT
ATTATCGCCAACACGGGCGAGCTTAAAATTGGAGACTTGGGCCTCTCTAC
TGTCAGCCAACGGGCCGAGTCCTGCGTGGGCACCGCGCCTTTCATGGCCC
CTGAGCTCTTCGAGGAAGACTACGATGAGAAGGTGGGTGTCACTCCCCTC
TCCCCGCCCTCCCT
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protein sequence of rna1677

>rna1677-protein ID=rna1677-protein|Name=rna1677|organism=Nannochloropsis gaditana|type=polypeptide|length=152bp
MPARNSLSLFSRLAPRSNLPSLLHGTSAFHNVHCNVTRPSQPFSTVGSQR
IPHLSKQARAAALKEDLAGWVDVKGGERDAVEKTFIFHDFNEAWGFMSRV
ALLAEQHNHHPEWSNVYNKVHVVLTTHDAGGVSQKDVTLAKAMDTIVKKG
KE
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mRNA from alignment at CM002457.1:1241126..1242105+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1677 ID=rna1677|Name=rna1677|organism=Nannochloropsis gaditana|type=mRNA|length=980bp|location=Sequence derived from alignment at CM002457.1:1241126..1242105+ (Nannochloropsis gaditana)
GTCCTTTttgacctctccctccaaattTCTCCCCCTGTTTCTTTTCAGGT
GTCCACCAAGCACATCACAACCTACAGTCTTAACGCTCTATTTGAAATGC
CAGCGCGTAATAGCCTGAGTCTCTTTTCTCGCCTTGCCCCAcgctccaac
ctcccctctttgcTGCACGGTACCTCTGCATTCCACAACGTCCACTGCAA
CGTGACGCGTCCCTCTCAGCCATTTTCTACCGTTGGATCACAACGTATCC
CTCATCTTTCAAAACAAGCGCGGGCAGCAGCATTAAAGGAGGACTTGGCA
GGATGGGTTGACGTTAAAGGTGGCGAGAGGGATGCAGTGGAGAAAACCTT
TATCTTCCACGATTTCAACGAGGCAAGTCAGACTAAACGAATGTAATTAA
ATACTCCACGGGATACAATAGGATGTGGAAAAGCAATGTGTCCTTAATTA
AGGTCCTCTGACTTCCCCGTATCTCTTGTTCCCGACAAAtattcctctct
ccctctaGGCCTGGGGTTTCATGTCGCGTGTCGCGCTACTGGCGGAGCAA
CACAACCACCACCCGGAGTGGAGCAATGTGTACAACAAAGTTCACGTCGT
CTTGACCACTCACGACGCGGGAGGGGTCTCCCAGAAAGACGTGACGTTGG
CGAAGGCAATGGACACTATTgtgaaaaaggggaaggagtagGGCtcgaga
gagggtgggaggagtgATTTGAAGAGGTttgagagggggagaaagcagtG
TGTACAAGTTTTCAACATATAGTCGCGTGAAGAATTCAAAAATGAAAAGT
TAATCAGGTAAAAATAGCAACCAAAAATGTTGAGTACCAATTCGAAGGGG
TTTCAATCCAGCTAATGTATGTGCAGAGAGCAGCAAAAGGATCGCCCTCC
GATCAGCCTTCGACcagagcgaggaagagaagaggccCAACACAGAGCTA
TATGGACTGAATATACCTTGTCTaccctct
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Coding sequence (CDS) from alignment at CM002457.1:1241126..1242105+

>rna1677 ID=rna1677|Name=rna1677|organism=Nannochloropsis gaditana|type=CDS|length=918bp|location=Sequence derived from alignment at CM002457.1:1241126..1242105+ (Nannochloropsis gaditana)
ATGCCAGCGCGTAATAGCCTGAGTCTCTTTTCTCGCCTTGCCCCAcgctc
caacctcccctctttgcTGCACGGTACCTCTGCATTCCACAACGTCCACT
GCAACGTGACGCGTCCCTCTCAGCCATTTTCTACCGTTGGATCACAACGT
ATCCCTCATCTTTCAAAACAAGCGCGGGCAGCAGCATTAAAGGAGGACTT
GGCAGGATGGGTTGACGTTAAAGGTGGCGAGAGGGATGCAGTGGAGAAAA
CCTTTATCTTCCACGATTTCAACGAGGCCTGGGGTTTCATGTCGCGTGTC
GCGCTACTGGCGGAGCAACACAACCACCACCCGGAGTGGAGCAATGTGTA
CAACAAAGTTCACGTCGTCTTGACCACTCACGACGCGGGAGGGGTCTCCC
AGAAAGACGTGACGTTGGCGAAGGCAATGGACACTATTgtgaaaaagggg
aaggagtagATGCCAGCGCGTAATAGCCTGAGTCTCTTTTCTCGCCTTGC
CCCAcgctccaacctcccctctttgcTGCACGGTACCTCTGCATTCCACA
ACGTCCACTGCAACGTGACGCGTCCCTCTCAGCCATTTTCTACCGTTGGA
TCACAACGTATCCCTCATCTTTCAAAACAAGCGCGGGCAGCAGCATTAAA
GGAGGACTTGGCAGGATGGGTTGACGTTAAAGGTGGCGAGAGGGATGCAG
TGGAGAAAACCTTTATCTTCCACGATTTCAACGAGGCCTGGGGTTTCATG
TCGCGTGTCGCGCTACTGGCGGAGCAACACAACCACCACCCGGAGTGGAG
CAATGTGTACAACAAAGTTCACGTCGTCTTGACCACTCACGACGCGGGAG
GGGTCTCCCAGAAAGACGTGACGTTGGCGAAGGCAATGGACACTATTgtg
aaaaaggggaaggagtag
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Synonyms
Publications