EWM29000.1, cds1673 (CDS) Nannochloropsis gaditana

Overview
NameEWM29000.1
Unique Namecds1673
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1241222..1241497 +
Alignment locationCM002457.1:1241634..1241816 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29000.1
Productpterin-4-alpha-carbinolamine dehydratase
Orig transcript idgnl|cribi|Naga_100373g9.5926.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1241222..1241497 +
CM002457.1supercontigCM002457.1:1241634..1241816 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006729tetrahydrobiopterin biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:00081244-alpha-hydroxytetrahydrobiopterin dehydratase activity
Vocabulary: INTERPRO
TermDefinition
IPR001533Trans/pterin_deHydtase
Homology
BLAST of EWM29000.1 vs. NCBI_GenBank
Match: gi|585111499|gb|EWM29000.1| (pterin-4-alpha-carbinolamine dehydratase [Nannochloropsis gaditana])

HSP 1 Score: 317.005 bits (811), Expect = 1.424e-109
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0
Query:    1 MPARNSLSLFSRLAPRSNLPSLLHGTSAFHNVHCNVTRPSQPFSTVGSQRIPHLSKQARAAALKEDLAGWVDVKGGERDAVEKTFIFHDFNEAWGFMSRVALLAEQHNHHPEWSNVYNKVHVVLTTHDAGGVSQKDVTLAKAMDTIVKKGKE 152
            MPARNSLSLFSRLAPRSNLPSLLHGTSAFHNVHCNVTRPSQPFSTVGSQRIPHLSKQARAAALKEDLAGWVDVKGGERDAVEKTFIFHDFNEAWGFMSRVALLAEQHNHHPEWSNVYNKVHVVLTTHDAGGVSQKDVTLAKAMDTIVKKGKE
Sbjct:    1 MPARNSLSLFSRLAPRSNLPSLLHGTSAFHNVHCNVTRPSQPFSTVGSQRIPHLSKQARAAALKEDLAGWVDVKGGERDAVEKTFIFHDFNEAWGFMSRVALLAEQHNHHPEWSNVYNKVHVVLTTHDAGGVSQKDVTLAKAMDTIVKKGKE 152          
BLAST of EWM29000.1 vs. NCBI_GenBank
Match: gi|553180891|ref|XP_005853477.1| (pterin-4-alpha-carbinolamine dehydratase, partial [Nannochloropsis gaditana CCMP526] >gi|422295584|gb|EKU22883.1| pterin-4-alpha-carbinolamine dehydratase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 314.694 bits (805), Expect = 2.045e-108
Identity = 149/152 (98.03%), Postives = 151/152 (99.34%), Query Frame = 0
Query:    1 MPARNSLSLFSRLAPRSNLPSLLHGTSAFHNVHCNVTRPSQPFSTVGSQRIPHLSKQARAAALKEDLAGWVDVKGGERDAVEKTFIFHDFNEAWGFMSRVALLAEQHNHHPEWSNVYNKVHVVLTTHDAGGVSQKDVTLAKAMDTIVKKGKE 152
            MPARNSLSLFSRLAPRSNLPSLLHGTSAFHNVHCNVTRPSQPFSTVGSQRIPHLSKQARAAALKEDLAGWVDVKGGERDAVEKTFIFHDFNEAWGFMSRVALLAEQHNHHPEWSNVYNKVHV+LTTHDAGGVSQKDVTLAKAMDT VKKG+E
Sbjct:   18 MPARNSLSLFSRLAPRSNLPSLLHGTSAFHNVHCNVTRPSQPFSTVGSQRIPHLSKQARAAALKEDLAGWVDVKGGERDAVEKTFIFHDFNEAWGFMSRVALLAEQHNHHPEWSNVYNKVHVILTTHDAGGVSQKDVTLAKAMDTFVKKGEE 169          
BLAST of EWM29000.1 vs. NCBI_GenBank
Match: gi|1119936553|ref|WP_072818293.1| (4a-hydroxytetrahydrobiopterin dehydratase [Bradyrhizobium erythrophlei] >gi|1109650933|emb|SHN74172.1| pterin-4-alpha-carbinolamine dehydratase [Bradyrhizobium erythrophlei])

HSP 1 Score: 127.872 bits (320), Expect = 1.468e-35
Identity = 59/96 (61.46%), Postives = 76/96 (79.17%), Query Frame = 0
Query:   51 IPHLSKQARAAALKEDLAGWVDVKGGERDAVEKTFIFHDFNEAWGFMSRVALLAEQHNHHPEWSNVYNKVHVVLTTHDAGGVSQKDVTLAKAMDTI 146
            +  L+ +AR  ALKE L+GW +V G  RDA+E+TF+F DFNEA+GFM R AL+AE+ +HHPEW NVY  V VVL+THDAGGV+Q+D+ LAKAM+ I
Sbjct:    2 VERLTAEARKTALKE-LSGWTEVAG--RDAIERTFVFKDFNEAFGFMGRAALVAEKSDHHPEWRNVYKTVEVVLSTHDAGGVTQRDIELAKAMNAI 94          
BLAST of EWM29000.1 vs. NCBI_GenBank
Match: gi|1113554092|gb|OJY14171.1| (4a-hydroxytetrahydrobiopterin dehydratase [Rhizobiales bacterium 62-47])

HSP 1 Score: 126.716 bits (317), Expect = 4.056e-35
Identity = 61/94 (64.89%), Postives = 74/94 (78.72%), Query Frame = 0
Query:   53 HLSKQARAAALKEDLAGWVDVKGGERDAVEKTFIFHDFNEAWGFMSRVALLAEQHNHHPEWSNVYNKVHVVLTTHDAGGVSQKDVTLAKAMDTI 146
             LS +AR AAL+E L GW DV G  R+A+ +TFIF DFNEA+GFMSR AL+AE+ +HHPEW NVY  V VVL THDAGGV+ +DVTLA+AM+ I
Sbjct:    4 RLSAEARRAALRE-LKGWSDVSG--REAITRTFIFKDFNEAFGFMSRAALVAEKSDHHPEWRNVYKTVEVVLATHDAGGVTARDVTLARAMNAI 94          
BLAST of EWM29000.1 vs. NCBI_GenBank
Match: gi|639175452|ref|WP_024515076.1| (4a-hydroxytetrahydrobiopterin dehydratase [Bradyrhizobium sp. Tv2a-2])

HSP 1 Score: 126.331 bits (316), Expect = 5.646e-35
Identity = 59/96 (61.46%), Postives = 76/96 (79.17%), Query Frame = 0
Query:   51 IPHLSKQARAAALKEDLAGWVDVKGGERDAVEKTFIFHDFNEAWGFMSRVALLAEQHNHHPEWSNVYNKVHVVLTTHDAGGVSQKDVTLAKAMDTI 146
            +  LS +AR +ALK  L+GW +V G  R+A+ +TF+F DFNEA+GFMSR AL+AE+H+HHPEW NVY  V VVL THDAGGV+++DV LAKAM+ I
Sbjct:    2 VERLSAEARKSALK-TLSGWTEVAG--REAIARTFVFKDFNEAFGFMSRAALVAEKHDHHPEWRNVYKTVEVVLATHDAGGVTERDVALAKAMNAI 94          
BLAST of EWM29000.1 vs. NCBI_GenBank
Match: gi|1174064189|ref|WP_081422080.1| (4a-hydroxytetrahydrobiopterin dehydratase [Tardiphaga robiniae])

HSP 1 Score: 126.716 bits (317), Expect = 7.619e-35
Identity = 63/114 (55.26%), Postives = 82/114 (71.93%), Query Frame = 0
Query:   33 HCNVTRPSQPFSTVGSQRIPHLSKQARAAALKEDLAGWVDVKGGERDAVEKTFIFHDFNEAWGFMSRVALLAEQHNHHPEWSNVYNKVHVVLTTHDAGGVSQKDVTLAKAMDTI 146
            +C + R S+         +  LS +AR AA KE L+GW +V G  RDA+ +TF F DFNEA+GFM+RVA++AE+ +HHPEW NVY  V VVL+THDA GV+Q+DV LAKAM+TI
Sbjct:    4 NCVIGRYSKVQVKQEVAMVERLSAEARKAAFKE-LSGWSEVSG--RDAIARTFTFKDFNEAFGFMARVAVVAEKSDHHPEWRNVYKTVEVVLSTHDADGVTQRDVDLAKAMNTI 114          
BLAST of EWM29000.1 vs. NCBI_GenBank
Match: gi|1099527438|emb|SFL37834.1| (4a-hydroxytetrahydrobiopterin dehydratase [Bradyrhizobium sp. NFR13])

HSP 1 Score: 125.946 bits (315), Expect = 9.826e-35
Identity = 60/96 (62.50%), Postives = 77/96 (80.21%), Query Frame = 0
Query:   51 IPHLSKQARAAALKEDLAGWVDVKGGERDAVEKTFIFHDFNEAWGFMSRVALLAEQHNHHPEWSNVYNKVHVVLTTHDAGGVSQKDVTLAKAMDTI 146
            +  LS +AR AALKE L+GW +V G  RDA+ +TF F DFNEA+GFM+RVAL+AE+ +HHPEW NVY  V VVL+THDA GV+++D+ LAKAM+TI
Sbjct:    2 VERLSAEARKAALKE-LSGWSEVSG--RDAIARTFTFKDFNEAFGFMARVALVAEKSDHHPEWRNVYKTVEVVLSTHDADGVTKRDIDLAKAMNTI 94          
BLAST of EWM29000.1 vs. NCBI_GenBank
Match: gi|1016923514|gb|KZD21041.1| (4a-hydroxytetrahydrobiopterin dehydratase [Tardiphaga robiniae])

HSP 1 Score: 125.561 bits (314), Expect = 1.072e-34
Identity = 60/96 (62.50%), Postives = 76/96 (79.17%), Query Frame = 0
Query:   51 IPHLSKQARAAALKEDLAGWVDVKGGERDAVEKTFIFHDFNEAWGFMSRVALLAEQHNHHPEWSNVYNKVHVVLTTHDAGGVSQKDVTLAKAMDTI 146
            +  LS +AR AA KE L+GW +V G  RDA+ +TF F DFNEA+GFM+RVA++AE+ +HHPEW NVY  V VVL+THDA GV+Q+DV LAKAM+TI
Sbjct:    2 VERLSAEARKAAFKE-LSGWSEVSG--RDAIARTFTFKDFNEAFGFMARVAVVAEKSDHHPEWRNVYKTVEVVLSTHDADGVTQRDVDLAKAMNTI 94          
BLAST of EWM29000.1 vs. NCBI_GenBank
Match: gi|1093303590|emb|SEH83530.1| (4a-hydroxytetrahydrobiopterin dehydratase [Tardiphaga sp. OK245])

HSP 1 Score: 125.176 bits (313), Expect = 1.606e-34
Identity = 60/96 (62.50%), Postives = 77/96 (80.21%), Query Frame = 0
Query:   51 IPHLSKQARAAALKEDLAGWVDVKGGERDAVEKTFIFHDFNEAWGFMSRVALLAEQHNHHPEWSNVYNKVHVVLTTHDAGGVSQKDVTLAKAMDTI 146
            +  LS +AR AALKE L+GW +V G  RDA+ +TF F DFNEA+GFM+RVAL+AE+ +HHPEW NVY  V VVL+THDA GV+++DV LA+AM+TI
Sbjct:    2 VERLSAEARKAALKE-LSGWSEVSG--RDAIARTFTFKDFNEAFGFMARVALVAEKSDHHPEWRNVYKTVEVVLSTHDADGVTKRDVDLARAMNTI 94          
BLAST of EWM29000.1 vs. NCBI_GenBank
Match: gi|653549295|ref|WP_027580699.1| (4a-hydroxytetrahydrobiopterin dehydratase [Bradyrhizobium sp. Ai1a-2])

HSP 1 Score: 124.79 bits (312), Expect = 2.502e-34
Identity = 60/97 (61.86%), Postives = 76/97 (78.35%), Query Frame = 0
Query:   53 HLSKQARAAALKEDLAGWVDVKGGERDAVEKTFIFHDFNEAWGFMSRVALLAEQHNHHPEWSNVYNKVHVVLTTHDAGGVSQKDVTLAKAMDTIVKK 149
             LS +AR +ALKE L+GW +V G  R+A+ KTF F DFNEA+GFM+RVAL+AE+ +HHPEW NVY  V VVL THDAGGV+ +D+ LAKAM+ I K+
Sbjct:    4 RLSAEARKSALKE-LSGWSEVPG--REAIAKTFTFRDFNEAFGFMTRVALVAEKRDHHPEWRNVYKTVDVVLATHDAGGVTARDIELAKAMEAIAKQ 97          
The following BLAST results are available for this feature:
BLAST of EWM29000.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111499|gb|EWM29000.1|1.424e-109100.00pterin-4-alpha-carbinolamine dehydratase [Nannochl... [more]
gi|553180891|ref|XP_005853477.1|2.045e-10898.03pterin-4-alpha-carbinolamine dehydratase, partial ... [more]
gi|1119936553|ref|WP_072818293.1|1.468e-3561.464a-hydroxytetrahydrobiopterin dehydratase [Bradyrh... [more]
gi|1113554092|gb|OJY14171.1|4.056e-3564.894a-hydroxytetrahydrobiopterin dehydratase [Rhizobi... [more]
gi|639175452|ref|WP_024515076.1|5.646e-3561.464a-hydroxytetrahydrobiopterin dehydratase [Bradyrh... [more]
gi|1174064189|ref|WP_081422080.1|7.619e-3555.264a-hydroxytetrahydrobiopterin dehydratase [Tardiph... [more]
gi|1099527438|emb|SFL37834.1|9.826e-3562.504a-hydroxytetrahydrobiopterin dehydratase [Bradyrh... [more]
gi|1016923514|gb|KZD21041.1|1.072e-3462.504a-hydroxytetrahydrobiopterin dehydratase [Tardiph... [more]
gi|1093303590|emb|SEH83530.1|1.606e-3462.504a-hydroxytetrahydrobiopterin dehydratase [Tardiph... [more]
gi|653549295|ref|WP_027580699.1|2.502e-3461.864a-hydroxytetrahydrobiopterin dehydratase [Bradyrh... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1677rna1677Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications