rna1673, rna1673 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1673
Unique Name	rna1673
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3887
Alignment location	CM002457.1:1231135..1233344 +

Link to JBrowse

Properties


Property Name	Value
Product	ion channel
Orig transcript id	gnl\|cribi\|Naga_100585g2.10749.mrna
Orig protein id	gnl\|cribi\|Naga_100585g2.10749
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:1231135..1233344 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100585g2	gene1611	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1673	rna1673-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29005.1	cds1669	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:1231135..1233344+
coding sequence from alignment at CM002457.1:1231135..1233344+

mRNA sequence

>rna1673 ID=rna1673|Name=rna1673|organism=Nannochloropsis gaditana|type=mRNA|length=3887bp
AATCATCGATTTTTCAGGCTCGCCATGCGTAGTTATCGCTACATGAATAA
TTTGTAGGAATTGGACCATACTAGATGGTGTGAGCAGATGGTGAAGACTG
TAGCTCCACATCGTTGATCCATCCACGTATGTTGTCATTGTACCTGGCAT
GGGAGATGGAAGATCTTAATCTCCCGCCCATCTCTCTAGCTATCTATTAA
GTCTCCAAAAGTGAGTCAAGGACTCGCCTCTTCGCTCCCACTCCGACCTC
TGCTCGCGCATGACGTCGTTCCTGGATTTGTCTTGTGAATCTACCTTTGG
ATAAATCGTGCAGTTTCTTTTGGAGCTCACTTTTTCATTTCAGGAGTGGG
ACAGGGTGTAGACAGGGAGCTTTGGGTTCCTCACCAGATCGTTGTGCCCC
TCGTGTCCATGGTCTCGGACTTGATGTGCTGTCCTGCTTTCCATCACTCA
CTGTTCTGAAAATGTTGTCCGATCGATCATGCATCCCAACCCAAACGGGC
GTACCCACACAGGAGCCTACCCTTTAAGCTGTCTCGAACATTCATTGGCA
GGTGTGAAAAGGTGCGGCGCCAGATTTGGAGCTGAAGGGCACCTAGAAAA
CCAAAACCGATACAGTTTGGGGGAAGGGAGCCACGGCCCTTTGGGTTCTG
AAGCATGCTGTCTTCCTTGTCGTGGCGCAGAGCACGTTCTCCTCCTGTGC
TAGGCTCTGAGGAGGGTAATTGCCATCCTGGGAGCGCCAACAAAGGCGGC
ACAGGCAGCGGCCTAGGCAGCGGGGTGGGCATTTTGGTCGTAGGAAACCA
GGACGAGACCACGACGGCGGAGGAGAAGGAGGCCTTACTCCGGGAAGCAG
GGTCCGAGGAGGGAGGAAAGGGAGGAGGAGGGGAAAGCCAAGAGGATGGG
GCGTGGCCCCTCTCGGCCGCCCTCCCTCCCACCCCTACCCTGGAGAGGCC
CTCCCCCCCGACCTCCTCCTTGCCCGCCTCCAGCTTGACAGGCACGAACG
CGTCCAATTTAACCGTTTCTTTGGGCTCCGGAGGAACGGGCTTGTCCAGA
AGAACGACCTCCGCGGCCGCGCTGTTGAGTACCGGCCTGGGGGGTTCCAA
TGGCGCGAGCACCACTAGCTCGACGACTGCGTCCCCTTCGACGGGCCACA
CGGGTACCGCGGGGGGTGGGACCGCGGGGGGAGGAGGAGGGGGAGGTGGG
GGATTGGACGGATGGGGTCTGAGAGGGGCGAGCGAGGTGGAGGACGGGTA
CGAAGAGGGCATTGTGGTGGAGGTAGACAGCACGGGGGGCTTGTTGTGCA
GCAGCAGCAGCACGGAAGGCGTGCCTCGGCCCCGCTCGTTCCGGAAGGGT
GCCAAGGACGATTTTGAAGGGCTCTCGGCGGCCTTGACGATGGCGGGGAC
CCCGGCCGGGTCTGGGGGCCACGCGAGCGGGATTCCGTCGTCGGAGGAGG
GAGGGAAGGAGGGCGGGAGGGAGGTGCCGGCGTCCCGTGTGTTCTGGTCC
CCTCACCATTTGTACTTGCGCGCGCTTGCCTTGGTGGGGGGGAACGGGTT
CGGACGGCGAACAGGAGGCACCGCCAAGGACGAGAGCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCTTCCCCG
TCCTCCACCGCTGCTTCCTCCCTCGGCTCGTCCTTGACCCCGCCGGGGGC
GGCGCTGGAGAAGGAAATGTCCCGGGGGGAGCGCGCGGAGCTACTAGGCG
GGGAAGGAGGGGCTCATGCGAGCACTCCCACGAGCCGACTCGGGCATTCC
CTCCTCTTCCCCAAGCACCACGGTCCCCGACCGTTACATTCGTACGCCCT
GGCCCGGGCTTTTGAAAAGAAACGGCTGGCGGTGTTGGCCGCGTGGCGGC
ATCGTTCGAAACTCTCCCTTTTGATCATGTGTCCCCTCCTCGTCCTCCTC
CTCCTGGTCGTCACCTTAACCTTGGTATCTAGGAGCGGTGCTGCCGCGGC
GGGAAAAGCGGAGAAAGAACTGGCCTCGGCCTACCCTGGGGCCGCCGCCG
CCTTGTTGGAAGGGGGAGGGGCGCCGGAGGCATTGGCGCGGCAAAAGTTC
ACGGTGATTGTCAATACTTACAAGCGCCACGACATGGCGAAGGACGCCGT
CCGGCATTACGCCGCCTGCGGGAAGGTGCGGGCCGGGCAGACTGGGGGGG
AGGAGGGAGGGAAGGGGGGGAGGCGGGTCGTGTTGTTTTGTTGGTGTCAT
GGCTTGTGGTGGGGCAATACCCTCCTTTTTTTCCCCCGTCTCCCGTGCCC
CATCCCCTCTCCCTCTTTCACCTGACTACACGCTGATCAGCCTTTGCTTC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGCTTGCTCAGGTGGA
TGCGATCCGAGTCGTGTGGTCTGAGAACGAGACTGCGCCTCCCTCCCCGC
AGGAGGAGAAGGACAGGGCGTGGTTTAGTGACCATAAACCCGTCTACTAC
GATACGTATGCCACCACGAGTTTGAATAACCGTTTCGTGCCCCCGGCGGG
CAAAAAAGGCCGGGACAACGGCTTGGCCACCGACGCCGTCTTCGCCGTGG
ACGACGACATCCGGGTACCCTGCTCGGACCTGGAGTTTGCCTTTGGCGTC
TGGAAGGCCGCCGATCAATCGTTGGTGGGCTTCATGCCACGGGTCCACAC
CCTGAATCCCTTGGCGTTACGGGCGGTGGCGGAGAGGGAAGGGCTCAGGG
AAAAACGCCGGGTGGAGAGGCGACGACGGAACGGCCGGAAAAAGAAAATA
AGAGGGGGGGAGATGGAAGAGGCAGGGACGGGGGAGGAGGAGGAGGGGAT
GGAGATGGACAGCGAAGACGTTGGGGCGATGCCCCCTCTCTTTCGATACA
ATGGGTGGTGGAAAGTGTGGTGGGAAGGCGAATATTCCCTGATTCTGACC
AAGGCAGCGTTTTTGCACCGGGACTTCCTCCGGGCGTACACGGAAGAAAT
GCCGGCGGCGATTCGGAATTACGTGGACGAGAACCGGAATTGCGAGGACA
TTGCCATGCAATTCTTAGCTGCGAATATGACGGGAAAACCACCCATTTTT
GTCCGAGGAAGACTGACGGATTTGGGCGTCTTCAATGGCATCTCCACCAA
GAGTTGGACGCAGCTCGGGCACATGAAGAGCCGAGGGCAGTGTCTGAACG
ACTTTGTCGGTCTGTACGGCGGTCGCATGCCTTTGGTTATGGGAAGTGCG
GTGGCTGGTCCGACGGGGAGCCTTCTCTTTGGTCGGCCCTCCACCGTTTT
CGATTATTTCTCGAGCGACGTCCTGCTCGGTTCAGGGGGAGGGGGCGGGG
GAGGCGGGGAGGGAGAGCGGAGGCGGCGGGGACGGGCGTTACACCTGATA
CCCTTACTGGCGGTCTTCCTGTTGATCGTGGTGAAGCTCACCTTTTGGTA
GTCGAGAAGGACGGAGGGACAGGGAGGGTGGAAAGGAAGAAGCGGGGACG
CAACCTTCGAGAACCCACAGCGGGAGGCGAGGCTAGGGCGTGAGAGGCTC
TTGGAGAAGGAGGCAGGCCGTGGGACGGCCGAGCGGAGCGTGCACTTTTT
GAGACGATGGAACCAGGGAGGACGTGCCCGGTCCCGGGAATACTTTCTAG
AACTTTCTCTGACGCGTCAACGTCATGGGACGCGTAAAGTAAAAATGGAT
GGCTAGGAGTCTCCCACACCTCCTGTGGACCGGTGGTCGCGGAAGACTGG
GAAGACGTGTGAGGTTTAGCGGGCATAGGTGGGAGGGACATTAGTGTTTA
CGTACAGAAAGCAGCAGCAAAAAGGTTTTAAGGAGAAGGCAGAGCATCCA
AATAAAGCGAAATCAAGATCATTTCATAAGAAAAGGT

protein sequence of rna1673

>rna1673-protein ID=rna1673-protein|Name=rna1673|organism=Nannochloropsis gaditana|type=polypeptide|length=514bp
MTATPATFSSFTPPGSPPRKRNKAQEPSPSQDLPCINNYRGYVPPPGTTT
VEAIDLPVFLSTHGERQAPFAFFRQYIGPRKPVLIRGTLPDQQWRAGTMW
KDPEYLKSKAGKARVRVETRENTREEYGQGKETTMLFEEFVTEVVDKENQ
LLYLTTQELDIGPDDRPALMSSPLTELQGDLPLRPSLLRLLVPQNMNLWM
GRSGRGEGGREGESSSGLHHDYHDNLYILLGGRKVFRLYAPSEAPNMYTL
GKLRLVHGNGRLNYYGQPLTCADGREKNAVKAWEAARRLEEVARRSERES
GKEGGREREEEALEAALEAVLDTELEGEEGKEGQEEEEEEDAASDQEEYP
RLQAPQSGSPLPPSLPPPLPPSLPSTTFARTGKPPANFSRVDLTAPDGVD
PALFPAFPRHPPLEVEVQEGEMLYLPAGWFHHVQSKGGIHMAVNYWFHPP
DGEGGGGEGKDSVYMDGFWERDWQERMQGRREQEAVGGGGGNDGGSREGS
GKERRGEVERDGSE

mRNA from alignment at CM002457.1:1231135..1233344+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1673 ID=rna1673|Name=rna1673|organism=Nannochloropsis gaditana|type=mRNA|length=2210bp|location=Sequence derived from alignment at CM002457.1:1231135..1233344+ (Nannochloropsis gaditana)
AAACTTCCGCTTATCACGTTTTCCGAAAGCTTTGCATGGAATAATGGTGA
CTATATTTGTCAAAAGGCACACATGCATTGCGCCATTTCGCTTTGCACCA
TTTTACTTTACTGCGATGTTCTCGTAATATAGAAGTATCTACCTCAAACA
GTACCAAAAAAAGTCGCCTTCAACGTTTAACAAAAAAGACACCGAGGAAG
ACTGATGGTGAAGATTTGATTTAAATGGCCCTGAAAATGAGAAAAGGGTC
ACATTATTATTTTTATCCATTTTTACGGGATGAAGCTGACTCGTGTCTAA
AGCATACACACCTATTTCCCCTACCCCCCATCTAACATATCAGACGCAGT
TGCAGGCGCATGACTGCAACGCCCGCGACATTCAGCTCTTTTACCCCACC
AGGTTCTCCgccgaggaaaagaaacaaaGCGCAAGAGCCGTCACCTTCCC
AGGACCTCCCATGCATCAACAACTACCGCGGCTACGTCCCTCCACCGGGT
ACAACCACCGTCGAGGCGATTGaccttcctgtcttcttATCTACGCATGG
AGAACGCCAGGCTCCGTTCGCGTTTTTCCGTCAATACATAGGACCCCGAA
AGCCTGTTTTGATACGTGGTACACTCCCAGACCAACAGTGGCGGGCAGGG
ACCATGTGGAAAGACCCTGAGTACTTGAAGAGCAAAGCAGGGAAGGCGCG
AGTACGGGTGGAGACGCGCGAGAACACCCGGGAGGAATACGGCCAGGGAA
AAGAAACGACCATGCTGTTCGAGGAGTTTGTCACGGAGGTagtggacaag
gagaacCAGCTTCTCTACCtggtagggaggggagggagggcgggagggag
ggcgggagggagaagtcggaggggcccgggagcATGGTGTGGCGGAGGCG
TCGAGGGGGGTGATAGAGCCTGTCTCTTATCCCTTCAACCTCGCACACTC
CCACCTTGAACAGACAACGCAAGAGCTAGATATCGGTCCGGATGACCGAC
CAGCCCTCATGTCCAGCCCCTTGACGGAGCTGCAGGgggaccttcccctc
cgcccctccctccttcggctcCTTGTGCCTCAGAACATGAATTTGTGGAT
GGGTCGAagcgggcgtggggagggagggcgggagggagaaagcagcAGCG
GCCTTCACCACGATTATCACGACAATTTATACATACTTCTGGGCGGACGC
AAGGTTTTCCGCCTGTATGCGCCGTCGGAGGCTCCCAATATGTACACCTT
GGGGAAGCTAAGGTTGGTTCACGGTAACGGTCGTTTGAATTACTACGGGC
AGCCCTTAACCTGTgcggatgggagggagaagaatgCAGTGAAAGCCTGG
GAGGCGGCCAGAaggttggaggaagtggcgcgACGGTcagagagggaaag
cgggaaggagggagggagggagcgcgaggaggaggcgttggaggcaGCAT
TGGAGGCCGTTTTGGATACTGAGttagagggagaggaaggtaaggaggga
caagaagaggaagaggaggaggacgcggcgagCGATCAGGAAGAATATCC
ACGGCTCCAAGCGCCACAGTCGggctcgcccctccctccctccctccctc
ccccgcttcctccttccttgccaagCACCACCTTCGCACGAACGGGCAAG
CCCCCTGCAAATTTCAGTCGCGTGGACCTGACCGCTCCCGATGGCGtgga
ccccgccctctttcctgccttcccccggcaccctcctctggaggtggagg
tgcaggaaggggaaatgcTTTACCTCCCTGCTGGATGGTTCCACCACGTT
cagagcaaggggggcaTACACATGGCCGTGAACTACTGGTTTCATCCGcc
cgacggggagggaggagggggggaagggaaggatagCGTGTACATGGATG
GCTTTTGGGAGCGGGATTGGCAGGAACGAATGCAAGgtcggagggagcag
gaggcagtggggggggggggagggaatgacgGTGGGAGTCGAGAAGGATC
AGGCAAAGAGaggcgaggggaggttgagcgGGACGGGAGCGAGTGAGGGG
GAAAGCTGCAGGGGAGGTGCTCATCGGAAGTCATCCAGGTTTTGATGGCT
TTCTACATCCATGCACCGACGCCTGCTCTTTCTCCGAAGCAAGTTAGCAG
GCTGGCACGAAGCAATCTTGCTCGGATGGCCATTAATTCCCTCTTTCTGT
CCTTGATTTT

Coding sequence (CDS) from alignment at CM002457.1:1231135..1233344+

>rna1673 ID=rna1673|Name=rna1673|organism=Nannochloropsis gaditana|type=CDS|length=3090bp|location=Sequence derived from alignment at CM002457.1:1231135..1233344+ (Nannochloropsis gaditana)
ATGACTGCAACGCCCGCGACATTCAGCTCTTTTACCCCACCAGGTTCTCC
gccgaggaaaagaaacaaaGCGCAAGAGCCGTCACCTTCCCAGGACCTCC
CATGCATCAACAACTACCGCGGCTACGTCCCTCCACCGGGTACAACCACC
GTCGAGGCGATTGaccttcctgtcttcttATCTACGCATGGAGAACGCCA
GGCTCCGTTCGCGTTTTTCCGTCAATACATAGGACCCCGAAAGCCTGTTT
TGATACGTGGTACACTCCCAGACCAACAGTGGCGGGCAGGGACCATGTGG
AAAGACCCTGAGTACTTGAAGAGCAAAGCAGGGAAGGCGCGAGTACGGGT
GGAGACGCGCGAGAACACCCGGGAGGAATACGGCCAGGGAAAAGAAACGA
CCATGCTGTTCGAGGAGTTTGTCACGGAGGTagtggacaaggagaacCAG
CTTCTCTACCtgACAACGCAAGAGCTAGATATCGGTCCGGATGACCGACC
AGCCCTCATGTCCAGCCCCTTGACGGAGCTGCAGGgggaccttcccctcc
gcccctccctccttcggctcCTTGTGCCTCAGAACATGAATTTGTGGATG
GGTCGAagcgggcgtggggagggagggcgggagggagaaagcagcAGCGG
CCTTCACCACGATTATCACGACAATTTATACATACTTCTGGGCGGACGCA
AGGTTTTCCGCCTGTATGCGCCGTCGGAGGCTCCCAATATGTACACCTTG
GGGAAGCTAAGGTTGGTTCACGGTAACGGTCGTTTGAATTACTACGGGCA
GCCCTTAACCTGTgcggatgggagggagaagaatgCAGTGAAAGCCTGGG
AGGCGGCCAGAaggttggaggaagtggcgcgACGGTcagagagggaaagc
gggaaggagggagggagggagcgcgaggaggaggcgttggaggcaGCATT
GGAGGCCGTTTTGGATACTGAGttagagggagaggaaggtaaggagggac
aagaagaggaagaggaggaggacgcggcgagCGATCAGGAAGAATATCCA
CGGCTCCAAGCGCCACAGTCGggctcgcccctccctccctccctccctcc
cccgcttcctccttccttgccaagCACCACCTTCGCACGAACGGGCAAGC
CCCCTGCAAATTTCAGTCGCGTGGACCTGACCGCTCCCGATGGCGtggac
cccgccctctttcctgccttcccccggcaccctcctctggaggtggaggt
gcaggaaggggaaatgcTTTACCTCCCTGCTGGATGGTTCCACCACGTTc
agagcaaggggggcaTACACATGGCCGTGAACTACTGGTTTCATCCGccc
gacggggagggaggagggggggaagggaaggatagCGTGTACATGGATGG
CTTTTGGGAGCGGGATTGGCAGGAACGAATGCAAGgtcggagggagcagg
aggcagtggggggggggggagggaatgacgGTGGGAGTCGAGAAGGATCA
GGCAAAGAGaggcgaggggaggttgagcgGGACGGGAGCGAGTGAATGAC
TGCAACGCCCGCGACATTCAGCTCTTTTACCCCACCAGGTTCTCCgccga
ggaaaagaaacaaaGCGCAAGAGCCGTCACCTTCCCAGGACCTCCCATGC
ATCAACAACTACCGCGGCTACGTCCCTCCACCGGGTACAACCACCGTCGA
GGCGATTGaccttcctgtcttcttATCTACGCATGGAGAACGCCAGGCTC
CGTTCGCGTTTTTCCGTCAATACATAGGACCCCGAAAGCCTGTTTTGATA
CGTGGTACACTCCCAGACCAACAGTGGCGGGCAGGGACCATGTGGAAAGA
CCCTGAGTACTTGAAGAGCAAAGCAGGGAAGGCGCGAGTACGGGTGGAGA
CGCGCGAGAACACCCGGGAGGAATACGGCCAGGGAAAAGAAACGACCATG
CTGTTCGAGGAGTTTGTCACGGAGGTagtggacaaggagaacCAGCTTCT
CTACCtgACAACGCAAGAGCTAGATATCGGTCCGGATGACCGACCAGCCC
TCATGTCCAGCCCCTTGACGGAGCTGCAGGgggaccttcccctccgcccc
tccctccttcggctcCTTGTGCCTCAGAACATGAATTTGTGGATGGGTCG
AagcgggcgtggggagggagggcgggagggagaaagcagcAGCGGCCTTC
ACCACGATTATCACGACAATTTATACATACTTCTGGGCGGACGCAAGGTT
TTCCGCCTGTATGCGCCGTCGGAGGCTCCCAATATGTACACCTTGGGGAA
GCTAAGGTTGGTTCACGGTAACGGTCGTTTGAATTACTACGGGCAGCCCT
TAACCTGTgcggatgggagggagaagaatgCAGTGAAAGCCTGGGAGGCG
GCCAGAaggttggaggaagtggcgcgACGGTcagagagggaaagcgggaa
ggagggagggagggagcgcgaggaggaggcgttggaggcaGCATTGGAGG
CCGTTTTGGATACTGAGttagagggagaggaaggtaaggagggacaagaa
gaggaagaggaggaggacgcggcgagCGATCAGGAAGAATATCCACGGCT
CCAAGCGCCACAGTCGggctcgcccctccctccctccctccctcccccgc
ttcctccttccttgccaagCACCACCTTCGCACGAACGGGCAAGCCCCCT
GCAAATTTCAGTCGCGTGGACCTGACCGCTCCCGATGGCGtggaccccgc
cctctttcctgccttcccccggcaccctcctctggaggtggaggtgcagg
aaggggaaatgcTTTACCTCCCTGCTGGATGGTTCCACCACGTTcagagc
aaggggggcaTACACATGGCCGTGAACTACTGGTTTCATCCGcccgacgg
ggagggaggagggggggaagggaaggatagCGTGTACATGGATGGCTTTT
GGGAGCGGGATTGGCAGGAACGAATGCAAGgtcggagggagcaggaggca
gtggggggggggggagggaatgacgGTGGGAGTCGAGAAGGATCAGGCAA
AGAGaggcgaggggaggttgagcgGGACGGGAGCGAGTGA

Synonyms

Publications