rna1671, rna1671 (mRNA) Nannochloropsis gaditana

Overview
Namerna1671
Unique Namerna1671
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length600
Alignment locationCM002457.1:1222506..1223054 -

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Properties
Property NameValue
ProductUncharacterized protein
Orig transcript idgnl|cribi|Naga_100851g2.5671.mrna
Orig protein idgnl|cribi|Naga_100851g2.5671
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1222506..1223054 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100851g2gene1609Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1671rna1671-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29006.1cds1667Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1671 ID=rna1671|Name=rna1671|organism=Nannochloropsis gaditana|type=mRNA|length=600bp
ATGAGTGGCTGTGATTTTGGCAATACTGGTCAGCAGTATTCATCATCTCT
CGTCAATTTGCTTTTGTCGGGGAGTTTATATAGCCTTTTCGCAGCAATGG
CGAGGCGTTACGATTCGTCGACGACCACATTCTCACCCGAAGGCCGTCTA
CACCAGGTGGAGTATGCCATTGAAGCTATCAACAACGCAGGTACCTGCGT
TGGCATTTTATGCAGTGACGGCATCGTCTTGGCAGCGGAGCGAAAGACCA
CAAGCAAGCTCTTGGCCCCCTCAAAGTCCAGCGACAAGATATACCAGATC
GACGGACACATCGCTTCTGTGGTGGCGGGACTGACCTCCGATGCCAACAT
CCTGATCAATCAAGCACGCCTCTCTGCCCAACGGTATCTCTATCAGTACC
AGGAAGCCATGCCTGTGGAGCAACTCGTCCGGTCCATCTGCGACTACAAG
CAAGCTTATACGCAATACGGGGGCCTGCGCCCTTTCGGTGTTTCCTTCCT
TTTCGCCGGTTATGACAGGCATCAAGGCTTCCAACTCTACGAAGCCTGCT
CAAGAATGAATACCCGGAAGGGGGGAGACCTTCCGTGCAGGAGGGCTTGA
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protein sequence of rna1671

>rna1671-protein ID=rna1671-protein|Name=rna1671|organism=Nannochloropsis gaditana|type=polypeptide|length=125bp
MRLLSHNVLRNTAKGVVDGYPLKIEAAQIDVRDTEPDLTFIRHLLPTISF
PVLRSAAEDLGLDAAAFPASYSTTLGEDEAFLRALHKALFDVHVLEGSLV
CPESGRRFSIRGGIPDMMLTDEELS
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mRNA from alignment at CM002457.1:1222506..1223054-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1671 ID=rna1671|Name=rna1671|organism=Nannochloropsis gaditana|type=mRNA|length=549bp|location=Sequence derived from alignment at CM002457.1:1222506..1223054- (Nannochloropsis gaditana)
ATGCGCCTCCTCAGCCACAATGTCCTCCGCAATACCGCTAAGGGCGTGGT
GGATGGCTACCCTTTGAAGATCGAAGCTGCACAAATTGACGTACGTGCTC
CGGTATAAGGAAATGTAGCATTTTCAGACTATCAATGGGTCGAAAACAAA
GTTTTGTTCGGCTTCTTTCTCCCAGTGCATGCGTCCATAACGCAAGTCCC
CGAGGCAAGCCTTTGGGGGATCTCTCCTTGATGCATCCACCTACCCGCCC
ATTTCCCGCAGGTCCGTGACACAGAGCCTGACTTGACATTCATTCGGCAT
CTCTTACCGACGATATCCTTCCCAGTGCTGCGGTCGGCTGCGGAAGACTT
GGGGCTAGATGCGGCAGCTTTCCCCGCCTCCTATTCCACGACATTGGGAG
AGGACGAGGCTTTCTTGAGGGCCTTGCACAAGGCATTGTTCGACGTGCAC
GTGTTGGAGGGCTCGTTGGTGTGCCCAGAGAGCGGGAGGAGGTTTTCGAT
CCGAGGGGGCATACCAGACATGATGTTGACGGATGAGGAGTTGAGTTGA
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Coding sequence (CDS) from alignment at CM002457.1:1222506..1223054-

>rna1671 ID=rna1671|Name=rna1671|organism=Nannochloropsis gaditana|type=CDS|length=756bp|location=Sequence derived from alignment at CM002457.1:1222506..1223054- (Nannochloropsis gaditana)
GTCCGTGACACAGAGCCTGACTTGACATTCATTCGGCATCTCTTACCGAC
GATATCCTTCCCAGTGCTGCGGTCGGCTGCGGAAGACTTGGGGCTAGATG
CGGCAGCTTTCCCCGCCTCCTATTCCACGACATTGGGAGAGGACGAGGCT
TTCTTGAGGGCCTTGCACAAGGCATTGTTCGACGTGCACGTGTTGGAGGG
CTCGTTGGTGTGCCCAGAGAGCGGGAGGAGGTTTTCGATCCGAGGGGGCA
TACCAGACATGATGTTGACGGATGAGGAGTTGAGTTGAATGCGCCTCCTC
AGCCACAATGTCCTCCGCAATACCGCTAAGGGCGTGGTGGATGGCTACCC
TTTGAAGATCGAAGCTGCACAAATTGACGTCCGTGACACAGAGCCTGACT
TGACATTCATTCGGCATCTCTTACCGACGATATCCTTCCCAGTGCTGCGG
TCGGCTGCGGAAGACTTGGGGCTAGATGCGGCAGCTTTCCCCGCCTCCTA
TTCCACGACATTGGGAGAGGACGAGGCTTTCTTGAGGGCCTTGCACAAGG
CATTGTTCGACGTGCACGTGTTGGAGGGCTCGTTGGTGTGCCCAGAGAGC
GGGAGGAGGTTTTCGATCCGAGGGGGCATACCAGACATGATGTTGACGGA
TGAGGAGTTGAGTTGAATGCGCCTCCTCAGCCACAATGTCCTCCGCAATA
CCGCTAAGGGCGTGGTGGATGGCTACCCTTTGAAGATCGAAGCTGCACAA
ATTGAC
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Synonyms
Publications