EWM29006.1, cds1667 (CDS) Nannochloropsis gaditana

Overview
NameEWM29006.1
Unique Namecds1667
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1222965..1223054 -
Alignment locationCM002457.1:1222506..1222793 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29006.1
ProductUncharacterized protein
Orig transcript idgnl|cribi|Naga_100851g2.5671.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1222965..1223054 -
CM002457.1supercontigCM002457.1:1222506..1222793 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR005651UPF0434/Trm112
Homology
BLAST of EWM29006.1 vs. NCBI_GenBank
Match: gi|585111511|gb|EWM29006.1| (Uncharacterized protein Naga_100851g2 [Nannochloropsis gaditana])

HSP 1 Score: 253.062 bits (645), Expect = 3.844e-85
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0
Query:    1 MRLLSHNVLRNTAKGVVDGYPLKIEAAQIDVRDTEPDLTFIRHLLPTISFPVLRSAAEDLGLDAAAFPASYSTTLGEDEAFLRALHKALFDVHVLEGSLVCPESGRRFSIRGGIPDMMLTDEELS 125
            MRLLSHNVLRNTAKGVVDGYPLKIEAAQIDVRDTEPDLTFIRHLLPTISFPVLRSAAEDLGLDAAAFPASYSTTLGEDEAFLRALHKALFDVHVLEGSLVCPESGRRFSIRGGIPDMMLTDEELS
Sbjct:    1 MRLLSHNVLRNTAKGVVDGYPLKIEAAQIDVRDTEPDLTFIRHLLPTISFPVLRSAAEDLGLDAAAFPASYSTTLGEDEAFLRALHKALFDVHVLEGSLVCPESGRRFSIRGGIPDMMLTDEELS 125          
BLAST of EWM29006.1 vs. NCBI_GenBank
Match: gi|585111846|gb|EWM29320.1| (TRM112-like protein [Nannochloropsis gaditana])

HSP 1 Score: 138.658 bits (348), Expect = 2.545e-39
Identity = 60/125 (48.00%), Postives = 95/125 (76.00%), Query Frame = 0
Query:    1 MRLLSHNVLRNTAKGVVDGYPLKIEAAQIDVRDTEPDLTFIRHLLPTISFPVLRSAAEDLGLDAAAFPASYSTTLGEDEAFLRALHKALFDVHVLEGSLVCPESGRRFSIRGGIPDMMLTDEELS 125
            MRL++HN+L++  KGV++G+PL+IEA +++V++TE +  F+++LLP + +P LR A+++LG+D    P         D++FL+ +HK L DVHVLEGSLVCPE+GRRF I  GIP+M+L ++E++
Sbjct:   52 MRLITHNMLKSNVKGVINGFPLRIEAEKVEVKETEFNSEFVQNLLPKVDWPALRGASKELGMD--ELPEEMDEANKTDDSFLQLVHKLLLDVHVLEGSLVCPETGRRFPINNGIPNMLLHEDEVA 174          
BLAST of EWM29006.1 vs. NCBI_GenBank
Match: gi|298714145|emb|CBJ27326.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 130.954 bits (328), Expect = 6.339e-37
Identity = 58/124 (46.77%), Postives = 89/124 (71.77%), Query Frame = 0
Query:    1 MRLLSHNVLRNTAKGVVDGYPLKIEAAQIDVRDTEPDLTFIRHLLPTISFPVLRSAAEDLGLDAAAFPASYSTTLGEDEAFLRALHKALFDVHVLEGSLVCPESGRRFSIRGGIPDMMLTDEEL 124
            MRLL+HNVLR+  KGVV+GYPL+IEA  + + ++E    F++H+  T+ +  L  AA ++G+   + P + +  L ED +FL ALH+ L D+HV+EG+LVCPE+GRRF I  G+P++M T++E+
Sbjct:    1 MRLLTHNVLRSPMKGVVEGYPLRIEATDVQMVESEVKEEFVKHMATTLDWGALCKAAAEVGMPEGSLPPALTPELLEDSSFLEALHRVLMDMHVVEGTLVCPETGRRFPIAEGVPNLMCTEDEV 124          
BLAST of EWM29006.1 vs. NCBI_GenBank
Match: gi|971507999|dbj|GAQ90207.1| (hypothetical protein KFL_006130040 [Klebsormidium nitens])

HSP 1 Score: 122.479 bits (306), Expect = 1.621e-33
Identity = 57/124 (45.97%), Postives = 82/124 (66.13%), Query Frame = 0
Query:    1 MRLLSHNVLRNTAKGVVDGYPLKIEAAQIDVRDTEPDLTFIRHLLPTISFPVLRSAAEDLGLDAAAFPASYSTTLGEDEAFLRALHKALFDVHVLEGSLVCPESGRRFSIRGGIPDMMLTDEEL 124
            MRLL+HN+L    KGV  GYPLKIEA + + ++T+ +  F+RH+ P + +  LR AA  LGL+    P     +  EDE FLR  H  L ++H+ EG+LVCPE+GRRF +  GIP+M+L ++E+
Sbjct:    1 MRLLTHNMLACNIKGVTKGYPLKIEATKTEEKETDFNAGFLRHIYPKLDWKALREAAASLGLE--ELPEQVEPSQLEDEDFLRRFHHVLLEIHLEEGALVCPETGRRFPVSKGIPNMLLNEDEV 122          
BLAST of EWM29006.1 vs. NCBI_GenBank
Match: gi|1150692982|ref|XP_020257429.1| (multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Asparagus officinalis] >gi|1141994336|gb|ONK75555.1| uncharacterized protein A4U43_C03F18120 [Asparagus officinalis])

HSP 1 Score: 118.242 bits (295), Expect = 6.098e-32
Identity = 57/124 (45.97%), Postives = 82/124 (66.13%), Query Frame = 0
Query:    1 MRLLSHNVLRNTAKGVVDGYPLKIEAAQIDVRDTEPDLTFIRHLLPTISFPVLRSAAEDLGLDAAAFPASYSTTLGEDEAFLRALHKALFDVHVLEGSLVCPESGRRFSIRGGIPDMMLTDEEL 124
            MRLL+HN+L +  KGV  GYPL+IEA Q   ++ + +  F+R++ P I +P L SAA+ LG      P     ++ E + FLR  H AL +VHV EG+LVCPE+GRRF +  GIP+M+L ++E+
Sbjct:    1 MRLLTHNMLASNIKGVTSGYPLRIEAHQSAAKEADFNADFLRNVFPKIDWPALVSAAKTLGY--GDLPEEAEPSMLESDEFLRRFHHALLEVHVEEGALVCPETGRRFPVNKGIPNMLLHEDEV 122          
BLAST of EWM29006.1 vs. NCBI_GenBank
Match: gi|303274338|ref|XP_003056490.1| (methyltransferase-associated protein [Micromonas pusilla CCMP1545] >gi|226462574|gb|EEH59866.1| methyltransferase-associated protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 117.472 bits (293), Expect = 1.277e-31
Identity = 56/124 (45.16%), Postives = 79/124 (63.71%), Query Frame = 0
Query:    1 MRLLSHNVLRNTAKGVVDGYPLKIEAAQIDVRDTEPDLTFIRHLLPTISFPVLRSAAEDLGLDAAAFPASYSTTLGEDEAFLRALHKALFDVHVLEGSLVCPESGRRFSIRGGIPDMMLTDEEL 124
            MRLL+HN+L +  KG   G+PLK+E    + R TE D  F+ H LP +++   R+AAE LG+D    P++Y         FLR  H AL ++ V EG L+CPE+GRRF +R GIP+MML ++E+
Sbjct:    1 MRLLTHNLLASNVKGTTAGFPLKLEVLVKEERSTEFDAAFLLHTLPKLNWSAFRAAAESLGVD--KLPSTYPERDELTNEFLRVFHHALLEIEVQEGYLICPETGRRFPVRKGIPNMMLNEDEV 122          
BLAST of EWM29006.1 vs. NCBI_GenBank
Match: gi|693501668|emb|CEF96672.1| (Uncharacterised protein family UPF0434/Trm112 [Ostreococcus tauri])

HSP 1 Score: 116.316 bits (290), Expect = 3.351e-31
Identity = 56/124 (45.16%), Postives = 80/124 (64.52%), Query Frame = 0
Query:    1 MRLLSHNVLRNTAKGVVDGYPLKIEAAQIDVRDTEPDLTFIRHLLPTISFPVLRSAAEDLGLDAAAFPASYSTTLGEDEAFLRALHKALFDVHVLEGSLVCPESGRRFSIRGGIPDMMLTDEEL 124
            MRLL+HN+L   AKGVV+G+PLKI   +    +TE +  F+ H+LP + +    +AA ++G  A   P         +E FL+A H AL +VHV EG+LVCPESGR+F I  GIP+M+L ++E+
Sbjct:    1 MRLLAHNMLACNAKGVVNGFPLKIVVKETRETETEFNAEFLVHMLPKMEWAAFVNAAREIG--AGELPGEIPDDAATNEEFLQAFHHALLEVHVEEGTLVCPESGRKFPINKGIPNMLLNEDEV 122          
BLAST of EWM29006.1 vs. NCBI_GenBank
Match: gi|145341533|ref|XP_001415861.1| (predicted protein [Ostreococcus lucimarinus CCE9901] >gi|144576084|gb|ABO94153.1| predicted protein [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 115.931 bits (289), Expect = 4.912e-31
Identity = 58/126 (46.03%), Postives = 82/126 (65.08%), Query Frame = 0
Query:    1 MRLLSHNVLRNTAKGVVDGYPLKIEAAQIDVRDTEPDLT--FIRHLLPTISFPVLRSAAEDLGLDAAAFPASYSTTLGEDEAFLRALHKALFDVHVLEGSLVCPESGRRFSIRGGIPDMMLTDEEL 124
            MRLL+HN+L   AKGVV+G+PLKI     + R+ E D    F+ H+LP + +    +AA+++GL+    P+        DE FLR  H AL +VHV EG+LVCPESGR+F I  GIP+M+L ++E+
Sbjct:    1 MRLLAHNMLACNAKGVVNGFPLKI--VPKETREVEVDFNAEFLTHMLPKMEWSAFVNAAKEIGLEG--LPSEIPDDAASDEEFLRTFHHALLEVHVEEGTLVCPESGRKFPINKGIPNMLLNEDEV 122          
BLAST of EWM29006.1 vs. NCBI_GenBank
Match: gi|410913557|ref|XP_003970255.1| (PREDICTED: multifunctional methyltransferase subunit TRM112-like protein [Takifugu rubripes])

HSP 1 Score: 115.931 bits (289), Expect = 5.459e-31
Identity = 54/124 (43.55%), Postives = 80/124 (64.52%), Query Frame = 0
Query:    1 MRLLSHNVLRNTAKGVVDGYPLKIEAAQIDVRDTEPDLTFIRHLLPTISFPVLRSAAEDLGLDAAAFPASYSTTLGEDEAFLRALHKALFDVHVLEGSLVCPESGRRFSIRGGIPDMMLTDEEL 124
            M+LL+HN+L +  KGV  GYPL I+A ++ V + E +  F+  ++P + +  L  AAE+LG      P       G+DEAFL+ +H+ L +V V+EGSL CPESGR F I  GIP+M+L ++E+
Sbjct:    1 MKLLTHNMLTSHVKGVTQGYPLLIKATEVKVNEVEFNPEFVVKMIPKLEWSALVQAAEELG-QKQDLPEQLVADYGKDEAFLKKVHRILLEVEVMEGSLKCPESGREFPITRGIPNMLLNEDEV 123          
BLAST of EWM29006.1 vs. NCBI_GenBank
Match: gi|168020978|ref|XP_001763019.1| (predicted protein [Physcomitrella patens] >gi|162685831|gb|EDQ72224.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 112.464 bits (280), Expect = 1.079e-29
Identity = 48/124 (38.71%), Postives = 81/124 (65.32%), Query Frame = 0
Query:    1 MRLLSHNVLRNTAKGVVDGYPLKIEAAQIDVRDTEPDLTFIRHLLPTISFPVLRSAAEDLGLDAAAFPASYSTTLGEDEAFLRALHKALFDVHVLEGSLVCPESGRRFSIRGGIPDMMLTDEEL 124
            MRLL+HN+L    KGV  G+PL IE  +++ +++E +  F+RH+ P + +     AA+ +G++    P      + +D+ FLR  H AL +VH+ EG+L+CPE+GRRF +  G+P+M+L ++E+
Sbjct:    1 MRLLTHNMLACNIKGVTKGFPLGIEHTRLETKESELNADFLRHIFPKLDWKAFHEAAQSVGVNN--IPDQVEPVMLDDDEFLRKFHHALLEVHLEEGALICPETGRRFPVTKGVPNMLLNEDEV 122          
The following BLAST results are available for this feature:
BLAST of EWM29006.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111511|gb|EWM29006.1|3.844e-85100.00Uncharacterized protein Naga_100851g2 [Nannochloro... [more]
gi|585111846|gb|EWM29320.1|2.545e-3948.00TRM112-like protein [Nannochloropsis gaditana][more]
gi|298714145|emb|CBJ27326.1|6.339e-3746.77conserved unknown protein [Ectocarpus siliculosus][more]
gi|971507999|dbj|GAQ90207.1|1.621e-3345.97hypothetical protein KFL_006130040 [Klebsormidium ... [more]
gi|1150692982|ref|XP_020257429.1|6.098e-3245.97multifunctional methyltransferase subunit TRM112-l... [more]
gi|303274338|ref|XP_003056490.1|1.277e-3145.16methyltransferase-associated protein [Micromonas p... [more]
gi|693501668|emb|CEF96672.1|3.351e-3145.16Uncharacterised protein family UPF0434/Trm112 [Ost... [more]
gi|145341533|ref|XP_001415861.1|4.912e-3146.03predicted protein [Ostreococcus lucimarinus CCE990... [more]
gi|410913557|ref|XP_003970255.1|5.459e-3143.55PREDICTED: multifunctional methyltransferase subun... [more]
gi|168020978|ref|XP_001763019.1|1.079e-2938.71predicted protein [Physcomitrella patens] >gi|1626... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1671rna1671Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications