rna1670, rna1670 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1670
Unique Name	rna1670
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2253
Alignment location	CM002457.1:1220317..1222228 -

Link to JBrowse

Properties


Property Name	Value
Product	20s proteasome subunit pac1
Orig transcript id	gnl\|cribi\|Naga_100851g1.5672.mrna
Orig protein id	gnl\|cribi\|Naga_100851g1.5672
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:1220317..1222228 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100851g1	gene1608	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1670	rna1670-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29007.1	cds1666	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:1220317..1222228-
coding sequence from alignment at CM002457.1:1220317..1222228-

mRNA sequence

>rna1670 ID=rna1670|Name=rna1670|organism=Nannochloropsis gaditana|type=mRNA|length=2253bp
ATGGTGCGGGCGATTGGTCTCCGCTTTTTGGAAGGAGACGTTTGGGCAGT
GCGCAGGGTACGACACAGTCAGCTTAGGCGTCAGGAGTCGCTTGCTAGAT
TGGCAATGTTGGGCAGTTTGGCGGCTCTGTGGCGTGCCCACGAGCAAGTA
TCTCCAGCGAGCGCCCACATGAGTACATCCTTTGCTTTGTTGGATACGCC
CCAGGTCCCTATGCTTGGTATGGTCTTGGTTGTTTCCCTCACCTGCCTCT
GTCTCGTGTATGTCCGAGCAAGTAAATGTGCAGCTTGGACAACCCCTGAC
GAGCCCAGCACCAAAACTCGCTTAAACGAGATTAAAGCTGACCGTTCTTC
CCCCTCCTTCCGCAGCCTTCCCAGTGGGGGGGGGAAGGAGGAGGATGTGG
CAACGAGTAATGCGGATCGGCTTTTTTTGTCGGGGGGCGTCGGCATGCAG
CGTGTTCCGCCCCGGCTCTCTCCAGCCGCCGGACAATCCATCATCATTAT
TGGCGCAGGCACTGCTGGCGCGGCTGCCGCCGTGGGACTGGCGGAGCGAG
GCTTCAAAGTCCTCCTGTTTGAGCGGGACATGAGTTTGCAGGATCGGATC
GTTGGGGAGCTCCTGCAGCCTGGCGGGGTCCGAGCTTTGGAACGTTTGGG
CCTCGACGAGTGCGCGAAGGAAGGCATCGACTCCGTGCACGTGGACGGCT
ACGTGGTGTTTACGCCCCCCCAGCACAAGAAGGAGGGCGGAGAAAAGGTC
CAGAGCATCCTTCTCAAGTATCCAGCCTACGATCCCGCAACCTTGAAGGA
GCTCTTCGGAGTGATCGATCCCTCCCCCTCCTCTCCCGCCGCCGACTGTC
CCACCCTCTCCCTCTCGCCCCCACGCTTCTCGGAAAAGGAGGGAGACAAG
CTCGTGCATGGCGCGGGCAGGGCGGTCACGCCCCCCTTCCCCGAGGGAAC
CAAAGTCACCCCTGCTCCTAACCCCCCCTCTTCCCCTTGCGGGCACCTCT
CCATGCCGCCTTCCCCATCCTTTCCCAGCGCTGCCCGTCAAGGCCCTACT
TCCCTCCATCCCCAAGGGAGGAGCTTCCACAACGGCCGGTTTGTCCAACG
GTTGCGGGCCCGGGCGTTGGCGGAACCGAACGTAACGGTCGTCAACGGCA
TCGTCTCCCGGCTTCTCTACGCCGAGCCCGACTCGCCCACGTCCCGGGTC
ATCGGCGTCGAGTACAAGATCGGCACGGGCCGGCGCGTCCGGAATGCAGA
CGGGGAGGAGGTGGAGGAGAAGGAGGTCCGGCGGGCCATGGCCCCCCTGA
CCCTCGTCGCCGACGGCCTCTGGTCCTCCCTCCGGACGCACGTGGACAAG
GCGGCCAAACCCACCCAACTCTCCTCCTTCGTCGGCCTCATCTTGTCCCA
CCCGCCCATGGCGTCCCCTTTGCCTCACCCCCACTGCGGCCACGTGGTGC
TGGCGGATCCCAGCCCGGTCCTCCTCTACCAAATCTCGTCCACGGAAACG
CGTGTCTTGGTGGATATCTTTGGGCGCATGCCTTCGGCGTCCACGGGAGA
CCTCGCCCACTACCTCTCCACGCACATCCAACCCCAATTGCCCCCCGTGC
TGCAGGCACCTTTCGCCGCCGCGGTGGCCCGGGGCGAGTTCAAGTCCATG
CCGAACCGCAGCATGCCCGCCGCCAACGTGGACCGCGACGGGGTCTTGAT
GGTGGGCGACGCGTTGAACATGCGGCACCCCTTGACAGGCGGGGGCATGA
CCGTGGCGCTCCGGGACGTGGAGGCCCTCTGTTACCTCCTGGAAACGTCG
ACGGACCTGGGGAACCCCGCGGCGATGCGGGTCTTGAAAGGTCGCTTCGC
CCGGGAACGGAAGGCATGGGCGGCGACCATCAACGTCCTTGCCAACGCCC
TGCACGCCGTCTTTTCCACGCCCGCGGGGAATCCGACCCGGAAAGATTTG
CGGGACGCCTGCTTCGACTACCTGTCCGTTGGCGGGTACTGCGCGGGGGG
GCCCATCAATTTGCTCTCTGGCTTGACCCCACGGCCCTCCATCCTGGCCT
TGCACTTCTTCCTGGTCGCCTTTCACGGCGTGCGGAAGTACCTGTGGCCC
GTCCCCAGCTGGGGAGGCCTGGGGAGGACGTACGAGATGCTGCAGGTCGC
GTGTGAGATCATCATGCCGCTCTTGTCGGTGGAGAAATCCACAGTGCTGG
CGGCGTGGCCTGTGCGCGCCCTGGTCGGGCTCATCTTTCCGTATGGAAGA
TGA

protein sequence of rna1670

>rna1670-protein ID=rna1670-protein|Name=rna1670|organism=Nannochloropsis gaditana|type=polypeptide|length=199bp
MSGCDFGNTGQQYSSSLVNLLLSGSLYSLFAAMARRYDSSTTTFSPEGRL
HQVEYAIEAINNAGTCVGILCSDGIVLAAERKTTSKLLAPSKSSDKIYQI
DGHIASVVAGLTSDANILINQARLSAQRYLYQYQEAMPVEQLVRSICDYK
QAYTQYGGLRPFGVSFLFAGYDRHQGFQLYEACSRMNTRKGGDLPCRRA

mRNA from alignment at CM002457.1:1220317..1222228-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1670 ID=rna1670|Name=rna1670|organism=Nannochloropsis gaditana|type=mRNA|length=1912bp|location=Sequence derived from alignment at CM002457.1:1220317..1222228- (Nannochloropsis gaditana)
ATGAGTGGCTGTGATTTTGGCAATACTGGTCAGCAGTATTCATCATCTCT
CGTCAATTTGCTTTTGTCGGGGAGGTAGGACAGAAGAACGCGAAGGAGAA
AGGTATGGGAAAAAAAAAAAACCCTGAACACATGGGACAGCGATATATTT
TTCAATAGCCGCTTGTTATTTGATGCCAAATTCTTATAACATGGACATGG
AAAATGTCAAAGAGCTCGGACAGGGTGCGTGAACGAACGTGGTTGGAAAA
GTCCGCATTCCAATAGTTGTGGTTCCAGCAAACACCCCGTGGGACATCAG
CTACAAATATTTTGCATAGTACATGCAGAAGCCATTCTCGGGACGCCAAA
TTCCCTTTTTCTTGCCATGTTTTTGGGTGTGTACGAAACGTTAAAGGAAG
GGTTCGAAAACGTGGAACGAAGGGGCAAGCTCCTCTTTGCTTGACTTGCA
ACAAAAGCAAGTATAAGAGCCTGTCCGATGGCGTAGTTGATCACGATTCA
AGCACTTCCATGTGCATAACAGCTTGGTGCAGCTGGGTGGACGCGAGGCT
GCGTGGTTTTCAACCTGTTGGATGTCTTGATGCTTCGCTTTTTGCCCGCT
CGCTCAAAGCATGGAAGACGAAATGCTTCTTCCTCCTTACCTTGGCGTTT
TCATATACGCGAGTTTCCCTATATTCAACAATTTACAGTTTATATAGCCT
TTTCGCAGCAATGGCGAGGCGTTACGATTCGTCGACGACCACATTCTCAC
CCGAAGGTACATTAAGATCTCTACTTTCTGCCGTCTCCGATCAGACTTGC
CCTTTCAGTGCCCTCTGAGCTTGGTGTCCTTTCTTTCCCTATTCTCCCTC
CGAGTCATTCTACGTACAAGTCGAGAAGTCACGTTGAAAGAATGACTGCT
CATAATATCGGTGGTGGCTTTTCCACGACATTTATCCTTCGGGGGGGACG
TACAGGCCGTCTACACCAGGTGGAGTATGCCATTGAAGCTATCAACAACG
CAGGTACCTGCGTTGGCATTTTATGCAGTGACGGCATCGTCTTGGCAGCG
GAGCGAAAGACCACAAGCAAGCTCTTGGCCCCCTCAAAGTCCAGCGACAA
GATATACCAGATCGACGGACACATCGCTTCTGTGGTGGCGGGACTGACCT
CCGATGCCAACATCCTGATCAATCAAGGTGCGTCGCCAGAGACATCGAAA
AAGGAACAAAGAACTTCAAAACTTCGATGCATAGGAGGCGATCATACTCG
ACCCTGCAGAAAGGAAGCTGGCCACCTTTTATCAGCGGCCTGCGCCTTTG
TATATGTGTACGCTCCATCAGGCCGGAGTGCCCTCGAATTCAACCCCCCC
CTATGCCCTTTTCCTCTTGCCTCTGTCCGCACATGACATTCATTATCTTC
TCGTCCTGAAAGCCTCGTGCAACTGACCTGGAGCCATCTGGCTTTTTTTC
TTCTCTTTCCCTCCGTCTTTCCCGCAGCACGCCTCTCTGCCCAACGGTAT
CTCTATCAGTACCAGGAAGCCATGCCTGTGGAGCAACTCGTCCGGTCCAT
CTGCGACTACAAGCAAGCTTATACGCAATACGGGGGCCTGCGCCCTTTCG
GTGTTTCCTTCCTTTTCGCCGGTTATGACAGGTAGTTGTCCTTTTTTTCG
TCCTCACTCCTTTCCTCACTACGCTTGTACCCCACCCGACGAGACGCCTC
CACGTTTCCCTCCCCTTTACATTCCCTCCCCCCCCCTTCCCATGGCCCTT
CCCCCTCCAGGCATCAAGGCTTCCAACTCTACGAGTCGGATCCGGCAGGC
ACCTTTGGGGGCTGGAGCGCCACGGCCATTGGCGCCAATTTCCAAGCGGG
GAAGAGCCTGCTCAAGAATGAATACCCGGAAGGGGGGAGACCTTCCGTGC
AGGAGGGCTTGA

Coding sequence (CDS) from alignment at CM002457.1:1220317..1222228-

>rna1670 ID=rna1670|Name=rna1670|organism=Nannochloropsis gaditana|type=CDS|length=3600bp|location=Sequence derived from alignment at CM002457.1:1220317..1222228- (Nannochloropsis gaditana)
AGCCTGCTCAAGAATGAATACCCGGAAGGGGGGAGACCTTCCGTGCAGGA
GGGCTTGAGCATCAAGGCTTCCAACTCTACGACACGCCTCTCTGCCCAAC
GGTATCTCTATCAGTACCAGGAAGCCATGCCTGTGGAGCAACTCGTCCGG
TCCATCTGCGACTACAAGCAAGCTTATACGCAATACGGGGGCCTGCGCCC
TTTCGGTGTTTCCTTCCTTTTCGCCGGTTATGACAGGCCGTCTACACCAG
GTGGAGTATGCCATTGAAGCTATCAACAACGCAGGTACCTGCGTTGGCAT
TTTATGCAGTGACGGCATCGTCTTGGCAGCGGAGCGAAAGACCACAAGCA
AGCTCTTGGCCCCCTCAAAGTCCAGCGACAAGATATACCAGATCGACGGA
CACATCGCTTCTGTGGTGGCGGGACTGACCTCCGATGCCAACATCCTGAT
CAATCAAGTTTATATAGCCTTTTCGCAGCAATGGCGAGGCGTTACGATTC
GTCGACGACCACATTCTCACCCGAAGATGAGTGGCTGTGATTTTGGCAAT
ACTGGTCAGCAGTATTCATCATCTCTCGTCAATTTGCTTTTGTCGGGGAG
AGCCTGCTCAAGAATGAATACCCGGAAGGGGGGAGACCTTCCGTGCAGGA
GGGCTTGAGCATCAAGGCTTCCAACTCTACGACACGCCTCTCTGCCCAAC
GGTATCTCTATCAGTACCAGGAAGCCATGCCTGTGGAGCAACTCGTCCGG
TCCATCTGCGACTACAAGCAAGCTTATACGCAATACGGGGGCCTGCGCCC
TTTCGGTGTTTCCTTCCTTTTCGCCGGTTATGACAGGCCGTCTACACCAG
GTGGAGTATGCCATTGAAGCTATCAACAACGCAGGTACCTGCGTTGGCAT
TTTATGCAGTGACGGCATCGTCTTGGCAGCGGAGCGAAAGACCACAAGCA
AGCTCTTGGCCCCCTCAAAGTCCAGCGACAAGATATACCAGATCGACGGA
CACATCGCTTCTGTGGTGGCGGGACTGACCTCCGATGCCAACATCCTGAT
CAATCAAGTTTATATAGCCTTTTCGCAGCAATGGCGAGGCGTTACGATTC
GTCGACGACCACATTCTCACCCGAAGATGAGTGGCTGTGATTTTGGCAAT
ACTGGTCAGCAGTATTCATCATCTCTCGTCAATTTGCTTTTGTCGGGGAG
AGCCTGCTCAAGAATGAATACCCGGAAGGGGGGAGACCTTCCGTGCAGGA
GGGCTTGAGCATCAAGGCTTCCAACTCTACGACACGCCTCTCTGCCCAAC
GGTATCTCTATCAGTACCAGGAAGCCATGCCTGTGGAGCAACTCGTCCGG
TCCATCTGCGACTACAAGCAAGCTTATACGCAATACGGGGGCCTGCGCCC
TTTCGGTGTTTCCTTCCTTTTCGCCGGTTATGACAGGCCGTCTACACCAG
GTGGAGTATGCCATTGAAGCTATCAACAACGCAGGTACCTGCGTTGGCAT
TTTATGCAGTGACGGCATCGTCTTGGCAGCGGAGCGAAAGACCACAAGCA
AGCTCTTGGCCCCCTCAAAGTCCAGCGACAAGATATACCAGATCGACGGA
CACATCGCTTCTGTGGTGGCGGGACTGACCTCCGATGCCAACATCCTGAT
CAATCAAGTTTATATAGCCTTTTCGCAGCAATGGCGAGGCGTTACGATTC
GTCGACGACCACATTCTCACCCGAAGATGAGTGGCTGTGATTTTGGCAAT
ACTGGTCAGCAGTATTCATCATCTCTCGTCAATTTGCTTTTGTCGGGGAG
AGCCTGCTCAAGAATGAATACCCGGAAGGGGGGAGACCTTCCGTGCAGGA
GGGCTTGAGCATCAAGGCTTCCAACTCTACGACACGCCTCTCTGCCCAAC
GGTATCTCTATCAGTACCAGGAAGCCATGCCTGTGGAGCAACTCGTCCGG
TCCATCTGCGACTACAAGCAAGCTTATACGCAATACGGGGGCCTGCGCCC
TTTCGGTGTTTCCTTCCTTTTCGCCGGTTATGACAGGCCGTCTACACCAG
GTGGAGTATGCCATTGAAGCTATCAACAACGCAGGTACCTGCGTTGGCAT
TTTATGCAGTGACGGCATCGTCTTGGCAGCGGAGCGAAAGACCACAAGCA
AGCTCTTGGCCCCCTCAAAGTCCAGCGACAAGATATACCAGATCGACGGA
CACATCGCTTCTGTGGTGGCGGGACTGACCTCCGATGCCAACATCCTGAT
CAATCAAGTTTATATAGCCTTTTCGCAGCAATGGCGAGGCGTTACGATTC
GTCGACGACCACATTCTCACCCGAAGATGAGTGGCTGTGATTTTGGCAAT
ACTGGTCAGCAGTATTCATCATCTCTCGTCAATTTGCTTTTGTCGGGGAG
AGCCTGCTCAAGAATGAATACCCGGAAGGGGGGAGACCTTCCGTGCAGGA
GGGCTTGAGCATCAAGGCTTCCAACTCTACGACACGCCTCTCTGCCCAAC
GGTATCTCTATCAGTACCAGGAAGCCATGCCTGTGGAGCAACTCGTCCGG
TCCATCTGCGACTACAAGCAAGCTTATACGCAATACGGGGGCCTGCGCCC
TTTCGGTGTTTCCTTCCTTTTCGCCGGTTATGACAGGCCGTCTACACCAG
GTGGAGTATGCCATTGAAGCTATCAACAACGCAGGTACCTGCGTTGGCAT
TTTATGCAGTGACGGCATCGTCTTGGCAGCGGAGCGAAAGACCACAAGCA
AGCTCTTGGCCCCCTCAAAGTCCAGCGACAAGATATACCAGATCGACGGA
CACATCGCTTCTGTGGTGGCGGGACTGACCTCCGATGCCAACATCCTGAT
CAATCAAGTTTATATAGCCTTTTCGCAGCAATGGCGAGGCGTTACGATTC
GTCGACGACCACATTCTCACCCGAAGATGAGTGGCTGTGATTTTGGCAAT
ACTGGTCAGCAGTATTCATCATCTCTCGTCAATTTGCTTTTGTCGGGGAG
AGCCTGCTCAAGAATGAATACCCGGAAGGGGGGAGACCTTCCGTGCAGGA
GGGCTTGAGCATCAAGGCTTCCAACTCTACGACACGCCTCTCTGCCCAAC
GGTATCTCTATCAGTACCAGGAAGCCATGCCTGTGGAGCAACTCGTCCGG
TCCATCTGCGACTACAAGCAAGCTTATACGCAATACGGGGGCCTGCGCCC
TTTCGGTGTTTCCTTCCTTTTCGCCGGTTATGACAGGCCGTCTACACCAG
GTGGAGTATGCCATTGAAGCTATCAACAACGCAGGTACCTGCGTTGGCAT
TTTATGCAGTGACGGCATCGTCTTGGCAGCGGAGCGAAAGACCACAAGCA
AGCTCTTGGCCCCCTCAAAGTCCAGCGACAAGATATACCAGATCGACGGA
CACATCGCTTCTGTGGTGGCGGGACTGACCTCCGATGCCAACATCCTGAT
CAATCAAGTTTATATAGCCTTTTCGCAGCAATGGCGAGGCGTTACGATTC
GTCGACGACCACATTCTCACCCGAAGATGAGTGGCTGTGATTTTGGCAAT
ACTGGTCAGCAGTATTCATCATCTCTCGTCAATTTGCTTTTGTCGGGGAG

Synonyms

Publications