EWM29007.1, cds1666 (CDS) Nannochloropsis gaditana

Overview
NameEWM29007.1
Unique Namecds1666
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1222155..1222228 -
Alignment locationCM002457.1:1221473..1221540 -
Alignment locationCM002457.1:1221052..1221273 -
Alignment locationCM002457.1:1220598..1220751 -
Alignment locationCM002457.1:1220445..1220468 -
Alignment locationCM002457.1:1220317..1220374 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29007.1
Product20s proteasome subunit pac1
Orig transcript idgnl|cribi|Naga_100851g1.5672.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1222155..1222228 -
CM002457.1supercontigCM002457.1:1221473..1221540 -
CM002457.1supercontigCM002457.1:1221052..1221273 -
CM002457.1supercontigCM002457.1:1220598..1220751 -
CM002457.1supercontigCM002457.1:1220445..1220468 -
CM002457.1supercontigCM002457.1:1220317..1220374 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004298threonine-type endopeptidase activity
GO:0004175endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0051603proteolysis involved in cellular protein catabolic process
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005634nucleus
GO:0005839proteasome core complex
GO:0019773proteasome core complex, alpha-subunit complex
Vocabulary: INTERPRO
TermDefinition
IPR023332Proteasome_suA-type
IPR016050Proteasome_bsu_CS
IPR001353Proteasome_sua/b
IPR029055Ntn_hydrolases_N
IPR000426Proteasome_asu_N
Homology
BLAST of EWM29007.1 vs. NCBI_GenBank
Match: gi|585111512|gb|EWM29007.1| (20s proteasome subunit pac1 [Nannochloropsis gaditana])

HSP 1 Score: 410.994 bits (1055), Expect = 3.105e-145
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0
Query:    1 MSGCDFGNTGQQYSSSLVNLLLSGSLYSLFAAMARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILCSDGIVLAAERKTTSKLLAPSKSSDKIYQIDGHIASVVAGLTSDANILINQARLSAQRYLYQYQEAMPVEQLVRSICDYKQAYTQYGGLRPFGVSFLFAGYDRHQGFQLYEACSRMNTRKGGDLPCRRA 199
            MSGCDFGNTGQQYSSSLVNLLLSGSLYSLFAAMARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILCSDGIVLAAERKTTSKLLAPSKSSDKIYQIDGHIASVVAGLTSDANILINQARLSAQRYLYQYQEAMPVEQLVRSICDYKQAYTQYGGLRPFGVSFLFAGYDRHQGFQLYEACSRMNTRKGGDLPCRRA
Sbjct:    1 MSGCDFGNTGQQYSSSLVNLLLSGSLYSLFAAMARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILCSDGIVLAAERKTTSKLLAPSKSSDKIYQIDGHIASVVAGLTSDANILINQARLSAQRYLYQYQEAMPVEQLVRSICDYKQAYTQYGGLRPFGVSFLFAGYDRHQGFQLYEACSRMNTRKGGDLPCRRA 199          
BLAST of EWM29007.1 vs. NCBI_GenBank
Match: gi|299116799|emb|CBN74912.1| (proteasome subunit [Ectocarpus siliculosus])

HSP 1 Score: 253.062 bits (645), Expect = 4.697e-82
Identity = 114/150 (76.00%), Postives = 133/150 (88.67%), Query Frame = 0
Query:   33 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILCSDGIVLAAERKTTSKLLAPSKSSDKIYQIDGHIASVVAGLTSDANILINQARLSAQRYLYQYQEAMPVEQLVRSICDYKQAYTQYGGLRPFGVSFLFAGYDRHQGFQLYEA 182
            MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGIL  DGI++AAERK  SKLLAPSK+S+K Y++  + + VVAGLT+DAN+L+N AR+SAQRYLYQY E MP+EQLV+ +C+YKQAYTQ+GGLRPFGVSFLF G+D H GFQLY +
Sbjct:    1 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILAKDGIIMAAERKVVSKLLAPSKTSEKTYRLYENASCVVAGLTADANLLVNHARVSAQRYLYQYGEQMPLEQLVKEVCNYKQAYTQFGGLRPFGVSFLFTGWDEHHGFQLYHS 150          
BLAST of EWM29007.1 vs. NCBI_GenBank
Match: gi|1072233835|gb|OEU18565.1| (N-terminal nucleophile aminohydrolase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 243.047 bits (619), Expect = 3.970e-78
Identity = 114/150 (76.00%), Postives = 131/150 (87.33%), Query Frame = 0
Query:   33 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILCSDGIVLAAERKTTSKLLAPSKSSDKIYQIDGHIASVVAGLTSDANILINQARLSAQRYLYQYQEAMPVEQLVRSICDYKQAYTQYGGLRPFGVSFLFAGYDRHQGFQLYEA 182
            MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGIL SDGIV+A+ER+ TS LLAP+K+S+K YQ+ GH +  VAGLT+DANILI+QARL A RY YQYQE +P+EQLV  +C+YKQ YTQ GGLRPFGV+FLFAGYD   GFQLY++
Sbjct:    1 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILASDGIVMASERRITSGLLAPAKTSEKTYQLCGHASCNVAGLTADANILIDQARLRAGRYAYQYQEPIPIEQLVEYVCNYKQFYTQRGGLRPFGVAFLFAGYDEQYGFQLYQS 150          
BLAST of EWM29007.1 vs. NCBI_GenBank
Match: gi|219110765|ref|XP_002177134.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411669|gb|EEC51597.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 242.662 bits (618), Expect = 1.010e-77
Identity = 115/150 (76.67%), Postives = 128/150 (85.33%), Query Frame = 0
Query:   33 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILCSDGIVLAAERKTTSKLLAPSKSSDKIYQIDGHIASVVAGLTSDANILINQARLSAQRYLYQYQEAMPVEQLVRSICDYKQAYTQYGGLRPFGVSFLFAGYDRHQGFQLYEA 182
            MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGIL  DGIV+A+ER+ TS LLAPSK+S+K Y +  H A  VAGLT+DANILI QARL A RY YQYQE +PVEQLV  +C+YKQ YTQ GGLRPFGV+FLFAGYD H GFQLY++
Sbjct:    1 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILARDGIVMASERRITSGLLAPSKTSEKTYPLAAHAACNVAGLTADANILIEQARLRAGRYQYQYQEPIPVEQLVEHVCNYKQFYTQRGGLRPFGVAFLFAGYDEHFGFQLYQS 150          
BLAST of EWM29007.1 vs. NCBI_GenBank
Match: gi|223999683|ref|XP_002289514.1| (20S proteasome subunit PAC1 [Thalassiosira pseudonana CCMP1335] >gi|220974722|gb|EED93051.1| 20S proteasome subunit PAC1 [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 239.58 bits (610), Expect = 1.716e-76
Identity = 110/150 (73.33%), Postives = 128/150 (85.33%), Query Frame = 0
Query:   33 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILCSDGIVLAAERKTTSKLLAPSKSSDKIYQIDGHIASVVAGLTSDANILINQARLSAQRYLYQYQEAMPVEQLVRSICDYKQAYTQYGGLRPFGVSFLFAGYDRHQGFQLYEA 182
            MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGT VGIL  DG+V+A+ERK TS LLAP+++S+K Y++  H    VAGLT+DANILI+QARL A RY YQYQE +P+E LV  +C+YKQAYTQYGGLRPFGV+FLFAGYD   GFQLY++
Sbjct:    1 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTSVGILARDGVVMASERKVTSGLLAPARTSEKTYKLCPHATCTVAGLTADANILIDQARLRAGRYAYQYQEPIPIENLVEHVCNYKQAYTQYGGLRPFGVAFLFAGYDEQHGFQLYQS 150          
BLAST of EWM29007.1 vs. NCBI_GenBank
Match: gi|971509848|dbj|GAQ88356.1| (20S core proteasome subunit alpha protein [Klebsormidium nitens])

HSP 1 Score: 238.039 bits (606), Expect = 3.139e-76
Identity = 108/150 (72.00%), Postives = 130/150 (86.67%), Query Frame = 0
Query:   33 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILCSDGIVLAAERKTTSKLLAPSKSSDKIYQIDGHIASVVAGLTSDANILINQARLSAQRYLYQYQEAMPVEQLVRSICDYKQAYTQYGGLRPFGVSFLFAGYDRHQGFQLYEA 182
            MARRYDS TT FSPEGRL+QVEYA+EAI +AG  VGIL +D ++LAAE+K TSKLL  SK+S+K+Y+ID HIAS VAG+T+DANILIN ARL+AQRY + Y E MPVEQLV+S+CD KQ YTQ+GGLRPFGVSFLFAG+D+H GFQLY++
Sbjct:    1 MARRYDSRTTIFSPEGRLYQVEYAMEAIQHAGAAVGILATDAVILAAEKKITSKLLETSKASEKMYKIDDHIASAVAGITADANILINTARLAAQRYTFSYGEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHFGFQLYQS 150          
BLAST of EWM29007.1 vs. NCBI_GenBank
Match: gi|676392247|ref|XP_009039401.1| (hypothetical protein AURANDRAFT_60228 [Aureococcus anophagefferens] >gi|323449973|gb|EGB05857.1| hypothetical protein AURANDRAFT_60228 [Aureococcus anophagefferens])

HSP 1 Score: 238.039 bits (606), Expect = 4.584e-76
Identity = 105/148 (70.95%), Postives = 128/148 (86.49%), Query Frame = 0
Query:   33 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILCSDGIVLAAERKTTSKLLAPSKSSDKIYQIDGHIASVVAGLTSDANILINQARLSAQRYLYQYQEAMPVEQLVRSICDYKQAYTQYGGLRPFGVSFLFAGYDRHQGFQLY 180
            MARRYD + TTFSPEGRLHQVEYA+EAINNAGT VG+L +DG+V+A E++  +KLL P KSS+KIY++D H+A VVAGLT+DANILIN+AR+++QRY YQY EA+PVEQLV  +C++KQ YTQYGG RPFGV FLFAGYD H G+QLY
Sbjct:    1 MARRYDRNVTTFSPEGRLHQVEYAVEAINNAGTAVGLLATDGVVMAGEKQKVTKLLEPPKSSEKIYKLDDHVACVVAGLTADANILINEARVASQRYTYQYGEAIPVEQLVEKVCNHKQLYTQYGGQRPFGVKFLFAGYDDHFGYQLY 148          
BLAST of EWM29007.1 vs. NCBI_GenBank
Match: gi|922854977|gb|KOO23467.1| (proteasome subunit alpha type-4-like protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 235.728 bits (600), Expect = 2.726e-75
Identity = 108/150 (72.00%), Postives = 131/150 (87.33%), Query Frame = 0
Query:   33 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILCSDGIVLAAERKTTSKLLAPSKSSDKIYQIDGHIASVVAGLTSDANILINQARLSAQRYLYQYQEAMPVEQLVRSICDYKQAYTQYGGLRPFGVSFLFAGYDRHQGFQLYEA 182
            M+RRYDS TT FSPEGRL+QVEYA+EAI++AGT +GIL SDGIVLAAE+K TSKLL P+KSS+K+Y ID HIA  VAG+T+DANILINQAR+ AQRY + +QE  PVEQLV+++CD KQAYTQYGGLRPFGVS L+AG+D+  GFQLY++
Sbjct:    1 MSRRYDSRTTIFSPEGRLYQVEYAMEAISHAGTAIGILASDGIVLAAEKKLTSKLLEPTKSSEKMYMIDEHIAVAVAGITADANILINQARMHAQRYRFAFQEQQPVEQLVQTLCDEKQAYTQYGGLRPFGVSMLYAGWDKTYGFQLYQS 150          
BLAST of EWM29007.1 vs. NCBI_GenBank
Match: gi|1214713621|gb|OWZ24507.1| (Proteasome subunit alpha [Phytophthora megakarya])

HSP 1 Score: 234.572 bits (597), Expect = 7.775e-75
Identity = 108/150 (72.00%), Postives = 126/150 (84.00%), Query Frame = 0
Query:   33 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILCSDGIVLAAERKTTSKLLAPSKSSDKIYQIDGHIASVVAGLTSDANILINQARLSAQRYLYQYQEAMPVEQLVRSICDYKQAYTQYGGLRPFGVSFLFAGYDRHQGFQLYEA 182
            M+RRYD  TTTFSPEGRL QVEYA+EAINNAG+ VGIL  DGIV+AAE+KT SKLL PSK+S+K  ++D H+   VAGLTSDANIL+N ARLSAQRY   YQE  P EQLV++IC+YKQAYTQ+GG RPFGVSFL+AG+DRH GFQLY +
Sbjct:    1 MSRRYDGRTTTFSPEGRLFQVEYAMEAINNAGSAVGILAKDGIVIAAEKKTVSKLLMPSKTSEKTIKLDDHLICAVAGLTSDANILVNYARLSAQRYELAYQEKEPCEQLVQTICNYKQAYTQFGGQRPFGVSFLYAGWDRHHGFQLYHS 150          
BLAST of EWM29007.1 vs. NCBI_GenBank
Match: gi|397612435|gb|EJK61739.1| (hypothetical protein THAOC_17719 [Thalassiosira oceanica])

HSP 1 Score: 236.498 bits (602), Expect = 9.339e-75
Identity = 108/150 (72.00%), Postives = 128/150 (85.33%), Query Frame = 0
Query:   33 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILCSDGIVLAAERKTTSKLLAPSKSSDKIYQIDGHIASVVAGLTSDANILINQARLSAQRYLYQYQEAMPVEQLVRSICDYKQAYTQYGGLRPFGVSFLFAGYDRHQGFQLYEA 182
            MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGT VGIL  DG+V+A+E+K TS LLAP+++S+K Y++  H    VAGLT+DANILI+QARL A RY YQ+QE +P+E LV  +C+YKQAYTQYGGLRPFGV+FLFAGYD   GFQLY++
Sbjct:    1 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTSVGILAKDGVVMASEKKVTSGLLAPARTSEKTYKLCPHATCSVAGLTADANILIDQARLRAGRYEYQFQEPIPIENLVEHVCNYKQAYTQYGGLRPFGVAFLFAGYDETHGFQLYQS 150          
The following BLAST results are available for this feature:
BLAST of EWM29007.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111512|gb|EWM29007.1|3.105e-145100.0020s proteasome subunit pac1 [Nannochloropsis gadit... [more]
gi|299116799|emb|CBN74912.1|4.697e-8276.00proteasome subunit [Ectocarpus siliculosus][more]
gi|1072233835|gb|OEU18565.1|3.970e-7876.00N-terminal nucleophile aminohydrolase [Fragilariop... [more]
gi|219110765|ref|XP_002177134.1|1.010e-7776.67predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|223999683|ref|XP_002289514.1|1.716e-7673.3320S proteasome subunit PAC1 [Thalassiosira pseudon... [more]
gi|971509848|dbj|GAQ88356.1|3.139e-7672.0020S core proteasome subunit alpha protein [Klebsor... [more]
gi|676392247|ref|XP_009039401.1|4.584e-7670.95hypothetical protein AURANDRAFT_60228 [Aureococcus... [more]
gi|922854977|gb|KOO23467.1|2.726e-7572.00proteasome subunit alpha type-4-like protein [Chry... [more]
gi|1214713621|gb|OWZ24507.1|7.775e-7572.00Proteasome subunit alpha [Phytophthora megakarya][more]
gi|397612435|gb|EJK61739.1|9.339e-7572.00hypothetical protein THAOC_17719 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1670rna1670Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications