EWM29007.1, cds1666 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29007.1 vs. NCBI_GenBank
Match: gi|585111512|gb|EWM29007.1| (20s proteasome subunit pac1 [Nannochloropsis gaditana]) HSP 1 Score: 410.994 bits (1055), Expect = 3.105e-145 Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0
Query: 1 MSGCDFGNTGQQYSSSLVNLLLSGSLYSLFAAMARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILCSDGIVLAAERKTTSKLLAPSKSSDKIYQIDGHIASVVAGLTSDANILINQARLSAQRYLYQYQEAMPVEQLVRSICDYKQAYTQYGGLRPFGVSFLFAGYDRHQGFQLYEACSRMNTRKGGDLPCRRA 199
MSGCDFGNTGQQYSSSLVNLLLSGSLYSLFAAMARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILCSDGIVLAAERKTTSKLLAPSKSSDKIYQIDGHIASVVAGLTSDANILINQARLSAQRYLYQYQEAMPVEQLVRSICDYKQAYTQYGGLRPFGVSFLFAGYDRHQGFQLYEACSRMNTRKGGDLPCRRA
Sbjct: 1 MSGCDFGNTGQQYSSSLVNLLLSGSLYSLFAAMARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILCSDGIVLAAERKTTSKLLAPSKSSDKIYQIDGHIASVVAGLTSDANILINQARLSAQRYLYQYQEAMPVEQLVRSICDYKQAYTQYGGLRPFGVSFLFAGYDRHQGFQLYEACSRMNTRKGGDLPCRRA 199
BLAST of EWM29007.1 vs. NCBI_GenBank
Match: gi|299116799|emb|CBN74912.1| (proteasome subunit [Ectocarpus siliculosus]) HSP 1 Score: 253.062 bits (645), Expect = 4.697e-82 Identity = 114/150 (76.00%), Postives = 133/150 (88.67%), Query Frame = 0
Query: 33 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILCSDGIVLAAERKTTSKLLAPSKSSDKIYQIDGHIASVVAGLTSDANILINQARLSAQRYLYQYQEAMPVEQLVRSICDYKQAYTQYGGLRPFGVSFLFAGYDRHQGFQLYEA 182
MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGIL DGI++AAERK SKLLAPSK+S+K Y++ + + VVAGLT+DAN+L+N AR+SAQRYLYQY E MP+EQLV+ +C+YKQAYTQ+GGLRPFGVSFLF G+D H GFQLY +
Sbjct: 1 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILAKDGIIMAAERKVVSKLLAPSKTSEKTYRLYENASCVVAGLTADANLLVNHARVSAQRYLYQYGEQMPLEQLVKEVCNYKQAYTQFGGLRPFGVSFLFTGWDEHHGFQLYHS 150
BLAST of EWM29007.1 vs. NCBI_GenBank
Match: gi|1072233835|gb|OEU18565.1| (N-terminal nucleophile aminohydrolase [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 243.047 bits (619), Expect = 3.970e-78 Identity = 114/150 (76.00%), Postives = 131/150 (87.33%), Query Frame = 0
Query: 33 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILCSDGIVLAAERKTTSKLLAPSKSSDKIYQIDGHIASVVAGLTSDANILINQARLSAQRYLYQYQEAMPVEQLVRSICDYKQAYTQYGGLRPFGVSFLFAGYDRHQGFQLYEA 182
MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGIL SDGIV+A+ER+ TS LLAP+K+S+K YQ+ GH + VAGLT+DANILI+QARL A RY YQYQE +P+EQLV +C+YKQ YTQ GGLRPFGV+FLFAGYD GFQLY++
Sbjct: 1 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILASDGIVMASERRITSGLLAPAKTSEKTYQLCGHASCNVAGLTADANILIDQARLRAGRYAYQYQEPIPIEQLVEYVCNYKQFYTQRGGLRPFGVAFLFAGYDEQYGFQLYQS 150
BLAST of EWM29007.1 vs. NCBI_GenBank
Match: gi|219110765|ref|XP_002177134.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411669|gb|EEC51597.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 242.662 bits (618), Expect = 1.010e-77 Identity = 115/150 (76.67%), Postives = 128/150 (85.33%), Query Frame = 0
Query: 33 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILCSDGIVLAAERKTTSKLLAPSKSSDKIYQIDGHIASVVAGLTSDANILINQARLSAQRYLYQYQEAMPVEQLVRSICDYKQAYTQYGGLRPFGVSFLFAGYDRHQGFQLYEA 182
MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGIL DGIV+A+ER+ TS LLAPSK+S+K Y + H A VAGLT+DANILI QARL A RY YQYQE +PVEQLV +C+YKQ YTQ GGLRPFGV+FLFAGYD H GFQLY++
Sbjct: 1 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILARDGIVMASERRITSGLLAPSKTSEKTYPLAAHAACNVAGLTADANILIEQARLRAGRYQYQYQEPIPVEQLVEHVCNYKQFYTQRGGLRPFGVAFLFAGYDEHFGFQLYQS 150
BLAST of EWM29007.1 vs. NCBI_GenBank
Match: gi|223999683|ref|XP_002289514.1| (20S proteasome subunit PAC1 [Thalassiosira pseudonana CCMP1335] >gi|220974722|gb|EED93051.1| 20S proteasome subunit PAC1 [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 239.58 bits (610), Expect = 1.716e-76 Identity = 110/150 (73.33%), Postives = 128/150 (85.33%), Query Frame = 0
Query: 33 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILCSDGIVLAAERKTTSKLLAPSKSSDKIYQIDGHIASVVAGLTSDANILINQARLSAQRYLYQYQEAMPVEQLVRSICDYKQAYTQYGGLRPFGVSFLFAGYDRHQGFQLYEA 182
MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGT VGIL DG+V+A+ERK TS LLAP+++S+K Y++ H VAGLT+DANILI+QARL A RY YQYQE +P+E LV +C+YKQAYTQYGGLRPFGV+FLFAGYD GFQLY++
Sbjct: 1 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTSVGILARDGVVMASERKVTSGLLAPARTSEKTYKLCPHATCTVAGLTADANILIDQARLRAGRYAYQYQEPIPIENLVEHVCNYKQAYTQYGGLRPFGVAFLFAGYDEQHGFQLYQS 150
BLAST of EWM29007.1 vs. NCBI_GenBank
Match: gi|971509848|dbj|GAQ88356.1| (20S core proteasome subunit alpha protein [Klebsormidium nitens]) HSP 1 Score: 238.039 bits (606), Expect = 3.139e-76 Identity = 108/150 (72.00%), Postives = 130/150 (86.67%), Query Frame = 0
Query: 33 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILCSDGIVLAAERKTTSKLLAPSKSSDKIYQIDGHIASVVAGLTSDANILINQARLSAQRYLYQYQEAMPVEQLVRSICDYKQAYTQYGGLRPFGVSFLFAGYDRHQGFQLYEA 182
MARRYDS TT FSPEGRL+QVEYA+EAI +AG VGIL +D ++LAAE+K TSKLL SK+S+K+Y+ID HIAS VAG+T+DANILIN ARL+AQRY + Y E MPVEQLV+S+CD KQ YTQ+GGLRPFGVSFLFAG+D+H GFQLY++
Sbjct: 1 MARRYDSRTTIFSPEGRLYQVEYAMEAIQHAGAAVGILATDAVILAAEKKITSKLLETSKASEKMYKIDDHIASAVAGITADANILINTARLAAQRYTFSYGEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHFGFQLYQS 150
BLAST of EWM29007.1 vs. NCBI_GenBank
Match: gi|676392247|ref|XP_009039401.1| (hypothetical protein AURANDRAFT_60228 [Aureococcus anophagefferens] >gi|323449973|gb|EGB05857.1| hypothetical protein AURANDRAFT_60228 [Aureococcus anophagefferens]) HSP 1 Score: 238.039 bits (606), Expect = 4.584e-76 Identity = 105/148 (70.95%), Postives = 128/148 (86.49%), Query Frame = 0
Query: 33 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILCSDGIVLAAERKTTSKLLAPSKSSDKIYQIDGHIASVVAGLTSDANILINQARLSAQRYLYQYQEAMPVEQLVRSICDYKQAYTQYGGLRPFGVSFLFAGYDRHQGFQLY 180
MARRYD + TTFSPEGRLHQVEYA+EAINNAGT VG+L +DG+V+A E++ +KLL P KSS+KIY++D H+A VVAGLT+DANILIN+AR+++QRY YQY EA+PVEQLV +C++KQ YTQYGG RPFGV FLFAGYD H G+QLY
Sbjct: 1 MARRYDRNVTTFSPEGRLHQVEYAVEAINNAGTAVGLLATDGVVMAGEKQKVTKLLEPPKSSEKIYKLDDHVACVVAGLTADANILINEARVASQRYTYQYGEAIPVEQLVEKVCNHKQLYTQYGGQRPFGVKFLFAGYDDHFGYQLY 148
BLAST of EWM29007.1 vs. NCBI_GenBank
Match: gi|922854977|gb|KOO23467.1| (proteasome subunit alpha type-4-like protein [Chrysochromulina sp. CCMP291]) HSP 1 Score: 235.728 bits (600), Expect = 2.726e-75 Identity = 108/150 (72.00%), Postives = 131/150 (87.33%), Query Frame = 0
Query: 33 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILCSDGIVLAAERKTTSKLLAPSKSSDKIYQIDGHIASVVAGLTSDANILINQARLSAQRYLYQYQEAMPVEQLVRSICDYKQAYTQYGGLRPFGVSFLFAGYDRHQGFQLYEA 182
M+RRYDS TT FSPEGRL+QVEYA+EAI++AGT +GIL SDGIVLAAE+K TSKLL P+KSS+K+Y ID HIA VAG+T+DANILINQAR+ AQRY + +QE PVEQLV+++CD KQAYTQYGGLRPFGVS L+AG+D+ GFQLY++
Sbjct: 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAISHAGTAIGILASDGIVLAAEKKLTSKLLEPTKSSEKMYMIDEHIAVAVAGITADANILINQARMHAQRYRFAFQEQQPVEQLVQTLCDEKQAYTQYGGLRPFGVSMLYAGWDKTYGFQLYQS 150
BLAST of EWM29007.1 vs. NCBI_GenBank
Match: gi|1214713621|gb|OWZ24507.1| (Proteasome subunit alpha [Phytophthora megakarya]) HSP 1 Score: 234.572 bits (597), Expect = 7.775e-75 Identity = 108/150 (72.00%), Postives = 126/150 (84.00%), Query Frame = 0
Query: 33 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILCSDGIVLAAERKTTSKLLAPSKSSDKIYQIDGHIASVVAGLTSDANILINQARLSAQRYLYQYQEAMPVEQLVRSICDYKQAYTQYGGLRPFGVSFLFAGYDRHQGFQLYEA 182
M+RRYD TTTFSPEGRL QVEYA+EAINNAG+ VGIL DGIV+AAE+KT SKLL PSK+S+K ++D H+ VAGLTSDANIL+N ARLSAQRY YQE P EQLV++IC+YKQAYTQ+GG RPFGVSFL+AG+DRH GFQLY +
Sbjct: 1 MSRRYDGRTTTFSPEGRLFQVEYAMEAINNAGSAVGILAKDGIVIAAEKKTVSKLLMPSKTSEKTIKLDDHLICAVAGLTSDANILVNYARLSAQRYELAYQEKEPCEQLVQTICNYKQAYTQFGGQRPFGVSFLYAGWDRHHGFQLYHS 150
BLAST of EWM29007.1 vs. NCBI_GenBank
Match: gi|397612435|gb|EJK61739.1| (hypothetical protein THAOC_17719 [Thalassiosira oceanica]) HSP 1 Score: 236.498 bits (602), Expect = 9.339e-75 Identity = 108/150 (72.00%), Postives = 128/150 (85.33%), Query Frame = 0
Query: 33 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILCSDGIVLAAERKTTSKLLAPSKSSDKIYQIDGHIASVVAGLTSDANILINQARLSAQRYLYQYQEAMPVEQLVRSICDYKQAYTQYGGLRPFGVSFLFAGYDRHQGFQLYEA 182
MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGT VGIL DG+V+A+E+K TS LLAP+++S+K Y++ H VAGLT+DANILI+QARL A RY YQ+QE +P+E LV +C+YKQAYTQYGGLRPFGV+FLFAGYD GFQLY++
Sbjct: 1 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTSVGILAKDGVVMASEKKVTSGLLAPARTSEKTYKLCPHATCSVAGLTADANILIDQARLRAGRYEYQFQEPIPIENLVEHVCNYKQAYTQYGGLRPFGVAFLFAGYDETHGFQLYQS 150 The following BLAST results are available for this feature:
BLAST of EWM29007.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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