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Properties
| Property Name | Value |
|---|
| Product | RNA helicase DEAD-box type |
| Orig transcript id | gnl|cribi|Naga_100780g2.7469.mrna |
| Orig protein id | gnl|cribi|Naga_100780g2.7469 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:1205669..1207968 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1664 ID=rna1664|Name=rna1664|organism=Nannochloropsis gaditana|type=mRNA|length=1626bp
TGATGCAATGTTGCTATGTTGCATGGCGCCTTAAAAAATCCTTGTGGTCA
GCCCTGTCAATACTGAAAGTGATGGTTGGACACTTGGACCTGTCAAATAT
TTGGTTCTTTTTCTTGTCCTGCCCGTCATTATTACTATTATTGCATCTCA
CCCTGCCTGTGACAGCTCCCTTTGTCTCCACCTCCTCCCTCTCTCCTTTC
TTGCCACCATCCTCCCTACGTCACCACCTTGTCCGCTTCCCGGAAAAAGC
CTCGCACACGTGAAAGGCAAAAACGTGTGCATGCCTGGTTGGACGGCTCG
TCTTGCGAGTCGCCTGATTGCCTGACGGGGACTTTGGTCGCGCCTCGAAC
ATCACACGTGTGCGCATAGACTTGTATTTCAACGATGTTGACCTCCCCTC
TCTTTACCACCTCAAAATAGGTTACAAGTTGCCTCCGTTCGACTCGTTCG
GTCGCATAAATATGCCCACACTATCGATCTTATATCGCCCTTTGTGTCAT
CAAACGTTTCGGGCGCACGTTGTCAAGTGGGGAAAAAGTGCAAGGCGTCC
GCTGAGGCGCTTTCGCCCCCGGCAGCAGGCTTTCAGCACGGCCAGTGAAG
CCCCTCCTTCTTCCCTTCCCCCTTCCACGGAAAACCCCATCTCGTCAAGA
TCCGTGGAGGGGAACAACGAAAATTCATGGGGATGGAAGGTGAAGGTCGC
CGGGTTCATCTTGGTCCCTCTGAGCCTGCCGGCCGCAGTCGTGGCCGGCT
TGAAGTACGACCGCGAATTCAGAGACGACGTCGAAGCCCATTTTCCTGAG
ATAGTGGACGTGGTCCGTCACCGGGTCGGCTTTCAAGAGGACCTGGGGCG
CCGACGGGCGGAGTTGGAAAAGACGTTTATCAGCACGCAACCCGTTGGCG
TGCAAGTCCAGCTTCGAAACGGTCGACGGTTGACGACGGTGGCAAGTCCG
TTGCGGGATCTGTCAGGCCTGTACGAGGCGGTTGCGCCACGCGAAGAGGA
GGGGCCCATCGTCTCATTGGAGTTTCAGGATATTTCGCAGGAGAATGTGC
AAGACACCTCTCCCTCCAGGGATGTCCCCCCCCCTCCCACACTGGCCGTG
ATCCCCCCCGAGACCAGAGGGATGAACGTGCCCTCGCTGTGGGACAAAAT
ACAAGATGAGGTGGGAGGGGGTGATACGCTGCGTTTAAGGAGAGAGGGGG
CCGGACAGAACGAGAAACAAATTCTAATTCAACAGCTGGAGGCTTCCCTT
GAAGACCTCAAGGAGGAGATTGGACAGTTGCAAGCAAGCAAACTTGAGGG
ATCCGCTCGCGCCATTGATGACATTGAGGCAGATATTAATTACCTCGCGG
AGCAAAGAAGGGATGTCCGCCGGCAGCTTAGAGGGCTTGGGAAATGGTGG
CGGTATTGGTGGTAATCCTTAAAAAAGCATACGAAGCAAGTTTAGAATCT
CATGTCGAATATATTTGGACTGAATATCAAATTAATGATATCTTGAGAGA
TAAAAATCCTTTCTTTTTGAGAATCGTCGCCCCAGGTTTTCCACACAACC
GTTTCCGGAAACATTATGAGTCGTATTTCAACCCCTACCATTCTAAAAAC
GTGAACAGAAGGCCATCATATTTTTC back to topprotein sequence of rna1664 >rna1664-protein ID=rna1664-protein|Name=rna1664|organism=Nannochloropsis gaditana|type=polypeptide|length=665bp
MPRRVPLPWPWHPLLRYVSAGAASTFLAASSSRRIGMATTTTTTTVLSIF
YLILSHSHSSTATLVDKRAGRGSTSGSRCSSSKRAFIQPSTPGRHLPKDH
TGLYVGHEYMSHLSWPLGTKTRPCGGVRRCTSMGTPSQGEDLTANTGTFG
ENIPFAALGLSPWLTAALSGAGKATSTHIQALALPTILAGENVVIGSETG
AGKTLAYLLPVMELAHRAHAARTAMKEKALAYYQERRGALKEGAGGRERV
GEYSSLAEDYPWEAPFAIVLVPNGQLSEQVLRMAGEVLGQGEGEENVRVE
ALKGSVDVWPYRVGSRAAPDVLVCTPATLSSFDREVNLFGEVNILVVDEA
DMLLEGDYGRHLERILVAFKRADKLHTARSEPLTQYVLAAATLPSYGLKS
VEELVKKRFPSAVRVHTDLMHKHHPQLTQVFVEAPEDLEGKIAMLLQVLE
KLRTKGEEARRAEGGKEGGKEGEGEAQATILPKTMVFLNTATAAARTQIA
VQAAGFPSVAFHKEVRREEREANLQRFRSNQVPLLVCTDLAARGLDIPDV
RQVVQVEFAPNVVQHLHRIGRAVRAGREGRAVNFYDLGAHDLVESLQLAQ
ADTLERSFSRQRGFRKKIKKYGRDYYRLPGGAYRGPGWEEEAKGRGRKGE
GGGEEGRGGKEAVER back to topmRNA from alignment at CM002457.1:1205669..1207968- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1664 ID=rna1664|Name=rna1664|organism=Nannochloropsis gaditana|type=mRNA|length=2300bp|location=Sequence derived from alignment at CM002457.1:1205669..1207968- (Nannochloropsis gaditana)
AAAGAAAAATCCTGCATACAGGACCCGTCTTTATTCCTAACAAGGCGACG
CAATGCCACGACGCGTCCCTCTTCCATGGCCCTGGCACCCATTGTTGCGT
TATGTCAGTGCAGGGGCTGCCTCAACTTTTTTAGCCGCTTCCTCCAGCAG
ACGGATTGGTATGGCTACCACCACCACCACCACCACCGTACTCAGCATAT
TCTACTTGATCCTTAGCCACTCTCATTCTTCTACGGCTACACTCGTCGAT
AAACGTGCCGGACGGGGAAGCACAAGCGGGAGTCGTTGCAGCAGTAGCAA
GAGGGCTTTCATCCAACCCTCCACGCCAGGCCGCCACCTCCCCAAGGACC
ATACCGGGCTCTACGTTGGTCACGAATACATGTCACACCTATCGTGGCCC
CTTGGAACAAAAACGCGTCCCTGTGGCGGGGTCAGACGATGCACCAGCAT
GGGCACCCCGTCTCAAGGGGAGGACCTGACGGCCAATACCGGCACCTTTG
GAGAGAACATCCCTTTCGCCGCACTCGGCCTCTCCCCATGGCTCACTGCG
GCCCTGTCCGGGGCCGGGAAAGCTACGTCCACGCACATCCAAGCATTGGC
CCTTCCCACCATCCTGGCTGGTGAGAACGTGGTAATAGGGAGCGAGACCG
GGGCCGGCAAGACCTTGGCCTACTTACTCCCAGTCATGGAACTCGCCCAC
CGCGCGCACGCTGCACGGACAGCCATGAAAGAGAAAGCCCTCGCGTACTA
CCAAGAGCGGAGGGGGGCCCTCAAGGAGGGAGCGGGTGGGAGGGAAAGGG
TGGGGGAGTACTCCTCCCTTGCCGAAGACTACCCTTGGGAGGCTCCCTTC
GCAATTGTGCTGGTGCCCAACGGGCAATTGAGCGAGCAAGTTCTCAGGAT
GGCGGGGGAGGTGCTGGGACAGGGCGAAGGGGAAGAGAACGTGAGGGTGG
AGGCCCTGAAAGGCAGCGTGGACGTGTGGCCGTACCGTGTCGGGAGCCGA
GCTGCCCCCGACGTCCTGGTATGCACGCCCGCCACCCTCTCTTCGTTCGA
CCGGGAGGTCAATCTCTTTGGGGAGGTGAATATTCTGGTGGTGGACGAGG
CGGACATGCTCCTGGAGGGGGACTACGGGCGCCATTTGGAGAGGATCTTG
GTCGCATTCAAGAGGTGGGGAAAGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGCAGGGAGGGAGGGAGGGAGGAAGAAAAGGCAGAGGAGGAGG
ACCCTTGAGACGGCATGCGACAAGACACATGACCACTTTCCCCCCCTTCC
CCTTCCTCCCGCCCAGAGCCGACAAACTCCACACTGCCCGTTCCGAGCCG
CTCACTCAATACGTGCTGGCGGCGGCCACGCTTCCCTCCTACGGCCTGAA
ATCGGTGGAAGAACTTGTGAAGAAACGCTTTCCTTCTGCCGTCCGGGTCC
ACACGGACTTGATGCACAAGCACCATCCCCAGCTGACACAAGTCTTCGTG
GAGGCGCCCGAGGATTTAGAGGGGAAGATCGCCATGTTGCTCCAAGTGCT
GGAAAAGCTCCGGACCAAGGGGGAGGAGGCGAGACGGGCGGAGGGAGGGA
AGGAGGGAGGGAAGGAGGGGGAGGGGGAGGCACAGGCAACCATCTTGCCC
AAGACGATGGTGTTTCTCAACACAGCCACCGCCGCAGCACGGACGCAAAT
CGCGGTGCAGGCGGCAGGCTTCCCCAGCGTGGCCTTCCACAAGGAGGTCC
GGCGGGAGGAAAGGGAGGCAAATTTGCAGCGTTTTCGATCGAACCAGGTG
CCCTTGTTGGTCTGCACGGATCTGGCCGCGCGGGGCCTAGACATTCCGGA
CGTCCGTCAGGTGGTTCAGGTGGAGTTCGCCCCCAACGTGGTGCAGCACT
TGCACCGGATCGGGCGGGCGGTGCGGGCGGGGCGGGAAGGGCGAGCCGTG
AATTTCTACGATCTGGGTGCTCATGACCTGGTGGAAAGCCTGCAACTGGC
CCAAGCTGACACTCTGGAACGTTCATTTTCACGGCAGCGGGGCTTTCGCA
AGAAGATCAAGAAATACGGGCGGGATTATTATCGGCTCCCCGGCGGGGCC
TATCGGGGGCCAGGGTGGGAGGAGGAGGCGAAGGGGAGGGGACGCAAAGG
GGAGGGCGGGGGGGAGGAGGGTCGAGGAGGGAAAGAGGCTGTGGAAAGGT
GAGGCATGGGGAGCCTTTTTCCTCTCTTTCCTCCTTTCAGAAAACTTCAG
CAAAAAGCACGCTTTATCCTGCCTTAATCGCGAATATCCAGTCTCAGTCC
back to topCoding sequence (CDS) from alignment at CM002457.1:1205669..1207968- >rna1664 ID=rna1664|Name=rna1664|organism=Nannochloropsis gaditana|type=CDS|length=3996bp|location=Sequence derived from alignment at CM002457.1:1205669..1207968- (Nannochloropsis gaditana)
AGCCGACAAACTCCACACTGCCCGTTCCGAGCCGCTCACTCAATACGTGC
TGGCGGCGGCCACGCTTCCCTCCTACGGCCTGAAATCGGTGGAAGAACTT
GTGAAGAAACGCTTTCCTTCTGCCGTCCGGGTCCACACGGACTTGATGCA
CAAGCACCATCCCCAGCTGACACAAGTCTTCGTGGAGGCGCCCGAGGATT
TAGAGGGGAAGATCGCCATGTTGCTCCAAGTGCTGGAAAAGCTCCGGACC
AAGGGGGAGGAGGCGAGACGGGCGGAGGGAGGGAAGGAGGGAGGGAAGGA
GGGGGAGGGGGAGGCACAGGCAACCATCTTGCCCAAGACGATGGTGTTTC
TCAACACAGCCACCGCCGCAGCACGGACGCAAATCGCGGTGCAGGCGGCA
GGCTTCCCCAGCGTGGCCTTCCACAAGGAGGTCCGGCGGGAGGAAAGGGA
GGCAAATTTGCAGCGTTTTCGATCGAACCAGGTGCCCTTGTTGGTCTGCA
CGGATCTGGCCGCGCGGGGCCTAGACATTCCGGACGTCCGTCAGGTGGTT
CAGGTGGAGTTCGCCCCCAACGTGGTGCAGCACTTGCACCGGATCGGGCG
GGCGGTGCGGGCGGGGCGGGAAGGGCGAGCCGTGAATTTCTACGATCTGG
GTGCTCATGACCTGGTGGAAAGCCTGCAACTGGCCCAAGCTGACACTCTG
GAACGTTCATTTTCACGGCAGCGGGGCTTTCGCAAGAAGATCAAGAAATA
CGGGCGGGATTATTATCGGCTCCCCGGCGGGGCCTATCGGGGGCCAGGGT
GGGAGGAGGAGGCGAAGGGGAGGGGACGCAAAGGGGAGGGCGGGGGGGAG
GAGGGTCGAGGAGGGAAAGAGGCTGTGGAAAGGTGAATGCCACGACGCGT
CCCTCTTCCATGGCCCTGGCACCCATTGTTGCGTTATGTCAGTGCAGGGG
CTGCCTCAACTTTTTTAGCCGCTTCCTCCAGCAGACGGATTGGTATGGCT
ACCACCACCACCACCACCACCGTACTCAGCATATTCTACTTGATCCTTAG
CCACTCTCATTCTTCTACGGCTACACTCGTCGATAAACGTGCCGGACGGG
GAAGCACAAGCGGGAGTCGTTGCAGCAGTAGCAAGAGGGCTTTCATCCAA
CCCTCCACGCCAGGCCGCCACCTCCCCAAGGACCATACCGGGCTCTACGT
TGGTCACGAATACATGTCACACCTATCGTGGCCCCTTGGAACAAAAACGC
GTCCCTGTGGCGGGGTCAGACGATGCACCAGCATGGGCACCCCGTCTCAA
GGGGAGGACCTGACGGCCAATACCGGCACCTTTGGAGAGAACATCCCTTT
CGCCGCACTCGGCCTCTCCCCATGGCTCACTGCGGCCCTGTCCGGGGCCG
GGAAAGCTACGTCCACGCACATCCAAGCATTGGCCCTTCCCACCATCCTG
GCTGGTGAGAACGTGGTAATAGGGAGCGAGACCGGGGCCGGCAAGACCTT
GGCCTACTTACTCCCAGTCATGGAACTCGCCCACCGCGCGCACGCTGCAC
GGACAGCCATGAAAGAGAAAGCCCTCGCGTACTACCAAGAGCGGAGGGGG
GCCCTCAAGGAGGGAGCGGGTGGGAGGGAAAGGGTGGGGGAGTACTCCTC
CCTTGCCGAAGACTACCCTTGGGAGGCTCCCTTCGCAATTGTGCTGGTGC
CCAACGGGCAATTGAGCGAGCAAGTTCTCAGGATGGCGGGGGAGGTGCTG
GGACAGGGCGAAGGGGAAGAGAACGTGAGGGTGGAGGCCCTGAAAGGCAG
CGTGGACGTGTGGCCGTACCGTGTCGGGAGCCGAGCTGCCCCCGACGTCC
TGGTATGCACGCCCGCCACCCTCTCTTCGTTCGACCGGGAGGTCAATCTC
TTTGGGGAGGTGAATATTCTGGTGGTGGACGAGGCGGACATGCTCCTGGA
GGGGGACTACGGGCGCCATTTGGAGAGGATCTTGGTCGCATTCAAGAGAG
CCGACAAACTCCACACTGCCCGTTCCGAGCCGCTCACTCAATACGTGCTG
GCGGCGGCCACGCTTCCCTCCTACGGCCTGAAATCGGTGGAAGAACTTGT
GAAGAAACGCTTTCCTTCTGCCGTCCGGGTCCACACGGACTTGATGCACA
AGCACCATCCCCAGCTGACACAAGTCTTCGTGGAGGCGCCCGAGGATTTA
GAGGGGAAGATCGCCATGTTGCTCCAAGTGCTGGAAAAGCTCCGGACCAA
GGGGGAGGAGGCGAGACGGGCGGAGGGAGGGAAGGAGGGAGGGAAGGAGG
GGGAGGGGGAGGCACAGGCAACCATCTTGCCCAAGACGATGGTGTTTCTC
AACACAGCCACCGCCGCAGCACGGACGCAAATCGCGGTGCAGGCGGCAGG
CTTCCCCAGCGTGGCCTTCCACAAGGAGGTCCGGCGGGAGGAAAGGGAGG
CAAATTTGCAGCGTTTTCGATCGAACCAGGTGCCCTTGTTGGTCTGCACG
GATCTGGCCGCGCGGGGCCTAGACATTCCGGACGTCCGTCAGGTGGTTCA
GGTGGAGTTCGCCCCCAACGTGGTGCAGCACTTGCACCGGATCGGGCGGG
CGGTGCGGGCGGGGCGGGAAGGGCGAGCCGTGAATTTCTACGATCTGGGT
GCTCATGACCTGGTGGAAAGCCTGCAACTGGCCCAAGCTGACACTCTGGA
ACGTTCATTTTCACGGCAGCGGGGCTTTCGCAAGAAGATCAAGAAATACG
GGCGGGATTATTATCGGCTCCCCGGCGGGGCCTATCGGGGGCCAGGGTGG
GAGGAGGAGGCGAAGGGGAGGGGACGCAAAGGGGAGGGCGGGGGGGAGGA
GGGTCGAGGAGGGAAAGAGGCTGTGGAAAGGTGAATGCCACGACGCGTCC
CTCTTCCATGGCCCTGGCACCCATTGTTGCGTTATGTCAGTGCAGGGGCT
GCCTCAACTTTTTTAGCCGCTTCCTCCAGCAGACGGATTGGTATGGCTAC
CACCACCACCACCACCACCGTACTCAGCATATTCTACTTGATCCTTAGCC
ACTCTCATTCTTCTACGGCTACACTCGTCGATAAACGTGCCGGACGGGGA
AGCACAAGCGGGAGTCGTTGCAGCAGTAGCAAGAGGGCTTTCATCCAACC
CTCCACGCCAGGCCGCCACCTCCCCAAGGACCATACCGGGCTCTACGTTG
GTCACGAATACATGTCACACCTATCGTGGCCCCTTGGAACAAAAACGCGT
CCCTGTGGCGGGGTCAGACGATGCACCAGCATGGGCACCCCGTCTCAAGG
GGAGGACCTGACGGCCAATACCGGCACCTTTGGAGAGAACATCCCTTTCG
CCGCACTCGGCCTCTCCCCATGGCTCACTGCGGCCCTGTCCGGGGCCGGG
AAAGCTACGTCCACGCACATCCAAGCATTGGCCCTTCCCACCATCCTGGC
TGGTGAGAACGTGGTAATAGGGAGCGAGACCGGGGCCGGCAAGACCTTGG
CCTACTTACTCCCAGTCATGGAACTCGCCCACCGCGCGCACGCTGCACGG
ACAGCCATGAAAGAGAAAGCCCTCGCGTACTACCAAGAGCGGAGGGGGGC
CCTCAAGGAGGGAGCGGGTGGGAGGGAAAGGGTGGGGGAGTACTCCTCCC
TTGCCGAAGACTACCCTTGGGAGGCTCCCTTCGCAATTGTGCTGGTGCCC
AACGGGCAATTGAGCGAGCAAGTTCTCAGGATGGCGGGGGAGGTGCTGGG
ACAGGGCGAAGGGGAAGAGAACGTGAGGGTGGAGGCCCTGAAAGGCAGCG
TGGACGTGTGGCCGTACCGTGTCGGGAGCCGAGCTGCCCCCGACGTCCTG
GTATGCACGCCCGCCACCCTCTCTTCGTTCGACCGGGAGGTCAATCTCTT
TGGGGAGGTGAATATTCTGGTGGTGGACGAGGCGGACATGCTCCTGGAGG
GGGACTACGGGCGCCATTTGGAGAGGATCTTGGTCGCATTCAAGAG back to top
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