rna1660, rna1660 (mRNA) Nannochloropsis gaditana

Overview
Namerna1660
Unique Namerna1660
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1240
Alignment locationCM002457.1:1189168..1190361 +

Link to JBrowse

Properties
Property NameValue
Product50s ribosomal protein l13
Orig transcript idgnl|cribi|Naga_101050g2.8458.mrna
Orig protein idgnl|cribi|Naga_101050g2.8458
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1189168..1190361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101050g2gene1598Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1660rna1660-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29017.1cds1656Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1660 ID=rna1660|Name=rna1660|organism=Nannochloropsis gaditana|type=mRNA|length=1240bp
CCCTCGTGCTCACGCCGATACCATACCGACTCACGGCCTCGTATAACATA
GGCCTAGACAGTATCACGCAACAAAGCTACATGTGCAAATAAAAAATTCA
AGCGGCATGCAGGGACAGGTCCGTTTTGGCAGCATGCGAAACCGATCCCG
GGGAGGGGGATGGCCGGGCAAGGTTCCGGCTGGAGGGAGGGGAGGTAAAA
GGGAGGATACACCGGGAAAGAAAGGAACAAAACGAGGAGAAGAAGACGCG
TACATGCAACGTATTCGAAGTCGAGCCAACATAGAACCTTCGAGTGAGGA
GGAGGAGGAGGAGGAGTCCTTGGAGAGGGTGTCCTGGCACGAGAAGGAAG
CGGGAATGCCGGTGGAGGAACGGGGGGAGCACGTCGGGAAGGGACATGAA
TCAGAGACCACCACCTCCTCCTCGACCGACGACAGTGACGCCAGCTCAGA
CAGGGACGGGGAGGGAGATGAAAGAGATGAACAGGTACGGTCCACCTTGA
AAAGCTTGCCGATGGCGGAACGCCTGGTGTTGCTGGCTTCAGGGGCCCAC
GGCGGGGGAAGACGGCGACAACTTCGCGTGGAGACAGTCCAGGAGTGCAA
CGACGACAAGGGAAAGGAAGAACAGCCAGAGCGTTCCAAAGGACACAACA
AACATGCGCCCAAAGAAGTTTCTTCCAAGAAGCCCGTGAGCAGGCTTCGG
CCGGTCTTCCCATCGGGACCTGTGGGGGGCTCGCAAGGAAAAGCCGCACG
TCGGAAAGCCCGAGACCCGCGCTTCGACCCGGCGTTGGGGAAAGTCAATT
ATGAGGCCTTTCGAAAGGCGTACGGGTTCTTGGAGGAGTACGAAGCCCGG
GAGATTCAAACCTTGCAGACGGCGTTGGGGAAAGACAAGGGGGTAGGCAC
CAGGAGAGAGCAGCAGCAGACCCGGCGGGAAGGGAGGGGGAGGGAAGAGG
AGGTGAAGGAGGCGTTGGCCAAGTTGGTGCAACGACGCCGGGAGCGGGAA
GGTTTCGAGAGAAAGGAGTCTGTCTTGCAGGAGCGGAAGCGGGCGGAGCG
CAGTAAAGTCTCCGCTGGAAAGGAACCCTTTTATTTGAAAAAGAAAGAGA
AACGAAGGTTGGAGTTAGAGGACCGGTACGAGCGCTTGGCCAAGGAGGGG
AAATTGAAGGCGGTGTTGGAGAAGAAAAGGAAGAGGAATGCGGCGAAGGA
CCACAGGTGGTTGCCTAGGAGCCGGCGGAGGAGGGCGAGG
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protein sequence of rna1660

>rna1660-protein ID=rna1660-protein|Name=rna1660|organism=Nannochloropsis gaditana|type=polypeptide|length=166bp
MSTSKAATSAASAIFTRVSSTVKDAALEAAKKARPQWHLIDAKDQVVGRL
ASQIASIIRGRHKPFYCPNADCGDYVVVVNARHVTLTGRKMKDKKYYWHT
MHPGGLKSRTPEQLIERGQAEEILRHAVLGMLPKNKLRNHAIKKLRVFPE
KYHIYEEQLRGKQSLL
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mRNA from alignment at CM002457.1:1189168..1190361+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1660 ID=rna1660|Name=rna1660|organism=Nannochloropsis gaditana|type=mRNA|length=1194bp|location=Sequence derived from alignment at CM002457.1:1189168..1190361+ (Nannochloropsis gaditana)
TGCTGCCAAAACGGACCTGTCCCTGCATGCCGCTTGAATTTTTTATTTGC
ACATGTAGCTTTGTTGCGTGATACTGTCTAGGCCTATGTTATACGAGGCC
GTGAGTCGGTATGGTATCGGCGTGAGCACGAGGGAGCTTTGTAAGAGGTT
GGCGACAGGGTCTGGTTACTGTGCGAGGAGAGCACATCCTAAGGAGAAAA
CTTTGACACAGGCATCATGAAACCCATAAGCCCCTTGCAAGGTGATCGCA
TTCAATGTGTCCATTCATTCACGTTCATCCATTTGCAATAGGCAGAGCCC
AAATTTTGTCAGCAAGTCAAACTTGGGAGCGCCCTCGACGtgcgccgccc
ccccccgccgcatccttcctcccgtcccagAGGCCACAAAATCCATGTCT
ACGAGCAAAGCAGCGACTTCCGCTGCCTCTGCCATCTTCACCCGTGTCAG
TTCCACGGTAAAAGATGCGGCTTTGGAGGCCGCCAAGAAGGCTCGACCTC
AATGGCATCTGATTGACGCCAAAGACCAGGCAagctcttctcccctcgGC
CCCCCCCTCATTCCCACCTTACACGTCTCCCTTGGCGTCCGCGGCGCGTC
TCATTTCTACGTTTATCGTCTCCGCGTGCCCTCTTGGGCAAGTTCTGAAA
TATGGCGGGctcggtctcctccttgtgtGTCACACGTGATCAGCTCACCC
CCTGGACTTCTTTTCCCCGTGCTCTCTCGATATCAGGTCGTCGGGCGACT
GGCAAGTCAAATAGCCTCCATCATCCGCGGGCGCCACAAGCCTTTCTACT
GCCCCAATGCAGACTGCGGGGACTACGTGGTGGTGGTCAATGCCCGGCAC
GTGACTTTGACCGGCCGGAAAATGAAGGACAAGAAGTACTACTGGCACAC
CATGCACCCAGGCGGCTTGAAGAGTAGGACTCCAGAGCAGTTGATAGAGA
GGGGCCAAGCGGAGGAAATTTTGCGCCACGCGGTTCTGGGCATGTTGCCG
AAGAACAAGCTGAGGAACCACGCCATAAAAAAACTCAGGGTCTTTCCCGA
GAAGTACCATATTTATGAGGAGCAATTGCGTGGAAAGCAGTCGCTTTTGT
AAACCACATCAAAGATTAAAAAAGGATAGAGAAGCATTGAGCGCTTGACG
GAAATGAACCGCGTGTCGCACGCCCTCCTACGCGCGCCAGATCC
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Coding sequence (CDS) from alignment at CM002457.1:1189168..1190361+

>rna1660 ID=rna1660|Name=rna1660|organism=Nannochloropsis gaditana|type=CDS|length=1002bp|location=Sequence derived from alignment at CM002457.1:1189168..1190361+ (Nannochloropsis gaditana)
ATGTCTACGAGCAAAGCAGCGACTTCCGCTGCCTCTGCCATCTTCACCCG
TGTCAGTTCCACGGTAAAAGATGCGGCTTTGGAGGCCGCCAAGAAGGCTC
GACCTCAATGGCATCTGATTGACGCCAAAGACCAGGTCGTCGGGCGACTG
GCAAGTCAAATAGCCTCCATCATCCGCGGGCGCCACAAGCCTTTCTACTG
CCCCAATGCAGACTGCGGGGACTACGTGGTGGTGGTCAATGCCCGGCACG
TGACTTTGACCGGCCGGAAAATGAAGGACAAGAAGTACTACTGGCACACC
ATGCACCCAGGCGGCTTGAAGAGTAGGACTCCAGAGCAGTTGATAGAGAG
GGGCCAAGCGGAGGAAATTTTGCGCCACGCGGTTCTGGGCATGTTGCCGA
AGAACAAGCTGAGGAACCACGCCATAAAAAAACTCAGGGTCTTTCCCGAG
AAGTACCATATTTATGAGGAGCAATTGCGTGGAAAGCAGTCGCTTTTGTA
AATGTCTACGAGCAAAGCAGCGACTTCCGCTGCCTCTGCCATCTTCACCC
GTGTCAGTTCCACGGTAAAAGATGCGGCTTTGGAGGCCGCCAAGAAGGCT
CGACCTCAATGGCATCTGATTGACGCCAAAGACCAGGTCGTCGGGCGACT
GGCAAGTCAAATAGCCTCCATCATCCGCGGGCGCCACAAGCCTTTCTACT
GCCCCAATGCAGACTGCGGGGACTACGTGGTGGTGGTCAATGCCCGGCAC
GTGACTTTGACCGGCCGGAAAATGAAGGACAAGAAGTACTACTGGCACAC
CATGCACCCAGGCGGCTTGAAGAGTAGGACTCCAGAGCAGTTGATAGAGA
GGGGCCAAGCGGAGGAAATTTTGCGCCACGCGGTTCTGGGCATGTTGCCG
AAGAACAAGCTGAGGAACCACGCCATAAAAAAACTCAGGGTCTTTCCCGA
GAAGTACCATATTTATGAGGAGCAATTGCGTGGAAAGCAGTCGCTTTTGT
AA
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Synonyms
Publications