EWM29017.1, cds1656 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29017.1 vs. NCBI_GenBank
Match: gi|585111530|gb|EWM29017.1| (50s ribosomal protein l13 [Nannochloropsis gaditana]) HSP 1 Score: 346.665 bits (888), Expect = 6.024e-121 Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0
Query: 1 MSTSKAATSAASAIFTRVSSTVKDAALEAAKKARPQWHLIDAKDQVVGRLASQIASIIRGRHKPFYCPNADCGDYVVVVNARHVTLTGRKMKDKKYYWHTMHPGGLKSRTPEQLIERGQAEEILRHAVLGMLPKNKLRNHAIKKLRVFPEKYHIYEEQLRGKQSLL 166
MSTSKAATSAASAIFTRVSSTVKDAALEAAKKARPQWHLIDAKDQVVGRLASQIASIIRGRHKPFYCPNADCGDYVVVVNARHVTLTGRKMKDKKYYWHTMHPGGLKSRTPEQLIERGQAEEILRHAVLGMLPKNKLRNHAIKKLRVFPEKYHIYEEQLRGKQSLL
Sbjct: 1 MSTSKAATSAASAIFTRVSSTVKDAALEAAKKARPQWHLIDAKDQVVGRLASQIASIIRGRHKPFYCPNADCGDYVVVVNARHVTLTGRKMKDKKYYWHTMHPGGLKSRTPEQLIERGQAEEILRHAVLGMLPKNKLRNHAIKKLRVFPEKYHIYEEQLRGKQSLL 166
BLAST of EWM29017.1 vs. NCBI_GenBank
Match: gi|673015590|ref|XP_008861756.1| (ribosomal protein L13 [Aphanomyces invadans] >gi|574483354|gb|ETW10345.1| ribosomal protein L13 [Aphanomyces invadans]) HSP 1 Score: 164.851 bits (416), Expect = 2.487e-49 Identity = 75/130 (57.69%), Postives = 98/130 (75.38%), Query Frame = 0
Query: 30 AKKARPQWHLIDAKDQVVGRLASQIASIIRGRHKPFYCPNADCGDYVVVVNARHVTLTGRKMKDKKYYWHTMHPGGLKSRTPEQLIERGQAEEILRHAVLGMLPKNKLRNHAIKKLRVFPEKYHIYEEQL 159
++ R +H++DAK QVVGRLASQ+A I+RG+HKP Y PN DCGD VVV+NA H+ LTG K KDK Y WHTM+PGGLK+RT +Q+ ++ EILR AV+GMLPKNK+R + KL++FP H +E +L
Sbjct: 6 SRMGRTAYHVVDAKGQVVGRLASQLAPILRGKHKPTYMPNVDCGDVVVVLNAEHIVLTGNKWKDKLYRWHTMYPGGLKTRTAQQIKDKDPG-EILRKAVMGMLPKNKMRALQVNKLKIFPGDEHTFEAEL 134
BLAST of EWM29017.1 vs. NCBI_GenBank
Match: gi|1173955584|gb|OQS02529.1| (50S ribosomal protein L13 [Thraustotheca clavata]) HSP 1 Score: 159.458 bits (402), Expect = 3.289e-47 Identity = 71/123 (57.72%), Postives = 96/123 (78.05%), Query Frame = 0
Query: 37 WHLIDAKDQVVGRLASQIASIIRGRHKPFYCPNADCGDYVVVVNARHVTLTGRKMKDKKYYWHTMHPGGLKSRTPEQLIERGQAEEILRHAVLGMLPKNKLRNHAIKKLRVFPEKYHIYEEQL 159
+H++DA+ QVVGRLASQ+A I+RG+HKP Y PN DCGD VVV+NA+ + LTG K DK Y WHT +PGGLK RT +Q+ E+ + E+LR A++GMLPKNK+R IKKL++FP + H +E++L
Sbjct: 13 YHVVDARGQVVGRLASQLAPILRGKHKPTYAPNVDCGDVVVVLNAKDIVLTGNKWDDKLYRWHTGYPGGLKERTAKQINEK-DSGEVLRKAIMGMLPKNKMRALQIKKLKIFPGEEHTFEQEL 134
BLAST of EWM29017.1 vs. NCBI_GenBank
Match: gi|698788996|ref|XP_009827530.1| (ribosomal protein L13 [Aphanomyces astaci] >gi|574117377|gb|ETV82859.1| ribosomal protein L13 [Aphanomyces astaci]) HSP 1 Score: 157.918 bits (398), Expect = 1.168e-46 Identity = 71/123 (57.72%), Postives = 93/123 (75.61%), Query Frame = 0
Query: 37 WHLIDAKDQVVGRLASQIASIIRGRHKPFYCPNADCGDYVVVVNARHVTLTGRKMKDKKYYWHTMHPGGLKSRTPEQLIERGQAEEILRHAVLGMLPKNKLRNHAIKKLRVFPEKYHIYEEQL 159
+H++DAK QVVGRLASQ+A I+RG+HKP Y PN DCGD VVV+NA H+ LTG K DK Y WHTM+PGGLK+RT +Q+ ++ +ILR AV+GMLPKNK+R + KL++FP H + +L
Sbjct: 13 YHVVDAKGQVVGRLASQLAPILRGKHKPTYMPNVDCGDVVVVLNAEHIVLTGNKWSDKLYRWHTMYPGGLKTRTAQQIKDK-DTTDILRKAVMGMLPKNKMRALQVDKLKIFPGDEHTFHAEL 134
BLAST of EWM29017.1 vs. NCBI_GenBank
Match: gi|953494899|emb|CEG43540.1| (ribosomal protein l13 [Plasmopara halstedii]) HSP 1 Score: 157.532 bits (397), Expect = 1.791e-46 Identity = 71/130 (54.62%), Postives = 100/130 (76.92%), Query Frame = 0
Query: 30 AKKARPQWHLIDAKDQVVGRLASQIASIIRGRHKPFYCPNADCGDYVVVVNARHVTLTGRKMKDKKYYWHTMHPGGLKSRTPEQLIERGQAEEILRHAVLGMLPKNKLRNHAIKKLRVFPEKYHIYEEQL 159
A+ ++ WH++DAK QV+GRLASQ+A I+RG+HKP Y PNADCGDYVVV+NA+ + LTG K +K Y WHT HPGGLK RT ++L+ER + E++LR AV GMLP+N++R KKL++F + H + +++
Sbjct: 5 AQASKVMWHVVDAKGQVLGRLASQLAPILRGKHKPTYAPNADCGDYVVVINAKDIVLTGNKWNNKLYRWHTGHPGGLKQRTAKELLER-KPEQVLRKAVYGMLPRNRMRALQDKKLKIFMGETHDFVKEV 133
BLAST of EWM29017.1 vs. NCBI_GenBank
Match: gi|1173945777|gb|OQR94370.1| (50S ribosomal protein L13 [Achlya hypogyna]) HSP 1 Score: 157.532 bits (397), Expect = 1.952e-46 Identity = 72/127 (56.69%), Postives = 93/127 (73.23%), Query Frame = 0
Query: 33 ARPQWHLIDAKDQVVGRLASQIASIIRGRHKPFYCPNADCGDYVVVVNARHVTLTGRKMKDKKYYWHTMHPGGLKSRTPEQLIERGQAEEILRHAVLGMLPKNKLRNHAIKKLRVFPEKYHIYEEQL 159
R +H++DAK QVVGRLASQ+A I+RG+HKP Y PN DCGDYVVV+NA+ + LTG K DK Y WHT PGGLK+RT +Q+ E+ ++LR AV+GMLPKNK+R I KL++FP H + +L
Sbjct: 9 GRIAYHVVDAKGQVVGRLASQLAPILRGKHKPTYAPNVDCGDYVVVLNAKDIVLTGNKWDDKLYRWHTGFPGGLKTRTAKQINEK-DTTDVLRKAVMGMLPKNKMRALQINKLKIFPGDEHTFHAEL 134
BLAST of EWM29017.1 vs. NCBI_GenBank
Match: gi|567983677|gb|ETL34064.1| (ribosomal protein L13 [Phytophthora parasitica] >gi|567983678|gb|ETL34065.1| ribosomal protein L13, variant [Phytophthora parasitica] >gi|570945057|gb|ETP10314.1| ribosomal protein L13 [Phytophthora parasitica CJ01A1] >gi|570945058|gb|ETP10315.1| ribosomal protein L13, variant [Phytophthora parasitica CJ01A1]) HSP 1 Score: 157.147 bits (396), Expect = 2.432e-46 Identity = 73/137 (53.28%), Postives = 103/137 (75.18%), Query Frame = 0
Query: 30 AKKARPQWHLIDAKDQVVGRLASQIASIIRGRHKPFYCPNADCGDYVVVVNARHVTLTGRKMKDKKYYWHTMHPGGLKSRTPEQLIERGQAEEILRHAVLGMLPKNKLRNHAIKKLRVFPEKYHIYEEQLRGKQSLL 166
A+ ++ WH++DAK QV+GRLASQ+A I+RG+HKP Y PN DCGDYVVV+NA+ + LTG K +K Y WHT HPGGLK RT ++L ER + EE+LR AV GMLP+N++R KKL++F + H + +++ G+ S++
Sbjct: 5 AQASKVAWHVVDAKGQVLGRLASQLAPILRGKHKPTYAPNVDCGDYVVVINAKDIVLTGNKWNNKLYRWHTGHPGGLKQRTAKELFER-KPEEVLRKAVYGMLPRNRMRALQDKKLKIFMGEEHDFVKEV-GENSVI 139
BLAST of EWM29017.1 vs. NCBI_GenBank
Match: gi|695375429|ref|XP_009515542.1| (Mitochondrial/chloroplast ribosomal protein L13 [Phytophthora sojae] >gi|348688453|gb|EGZ28267.1| Mitochondrial/chloroplast ribosomal protein L13 [Phytophthora sojae]) HSP 1 Score: 156.762 bits (395), Expect = 3.161e-46 Identity = 71/126 (56.35%), Postives = 95/126 (75.40%), Query Frame = 0
Query: 30 AKKARPQWHLIDAKDQVVGRLASQIASIIRGRHKPFYCPNADCGDYVVVVNARHVTLTGRKMKDKKYYWHTMHPGGLKSRTPEQLIERGQAEEILRHAVLGMLPKNKLRNHAIKKLRVFPEKYHIY 155
A+ ++ WH++DAK QV+GRLASQ+A I+RG+HKP Y PN DCGDYVVV+NA+ + LTG K +K Y WHT HPGGLK RT ++L ER + EE+LR AV GMLP+N++R KKL++F + H +
Sbjct: 5 AQASKVAWHVVDAKGQVLGRLASQLAPILRGKHKPTYAPNVDCGDYVVVINAKDIVLTGNKWNNKLYRWHTGHPGGLKQRTAKELFER-KPEEVLRKAVFGMLPRNRMRALQDKKLKIFMGEEHDF 129
BLAST of EWM29017.1 vs. NCBI_GenBank
Match: gi|675201413|ref|XP_008909591.1| (ribosomal protein L13 [Phytophthora parasitica INRA-310] >gi|675201415|ref|XP_008909592.1| ribosomal protein L13, variant [Phytophthora parasitica INRA-310] >gi|566017638|gb|ETI40549.1| ribosomal protein L13 [Phytophthora parasitica P1569] >gi|566017639|gb|ETI40550.1| ribosomal protein L13, variant [Phytophthora parasitica P1569] >gi|567955006|gb|ETK80639.1| ribosomal protein L13 [Phytophthora parasitica] >gi|567955007|gb|ETK80640.1| ribosomal protein L13, variant [Phytophthora parasitica] >gi|568013164|gb|ETL87341.1| ribosomal protein L13 [Phytophthora parasitica] >gi|568013165|gb|ETL87342.1| ribosomal protein L13, variant [Phytophthora parasitica] >gi|568043267|gb|ETM40562.1| ribosomal protein L13 [Phytophthora parasitica] >gi|568043268|gb|ETM40563.1| ribosomal protein L13, variant [Phytophthora parasitica] >gi|568090286|gb|ETN05121.1| ribosomal protein L13 [Phytophthora parasitica INRA-310] >gi|568090287|gb|ETN05122.1| ribosomal protein L13, variant [Phytophthora parasitica INRA-310] >gi|570321247|gb|ETO69195.1| ribosomal protein L13 [Phytophthora parasitica P1976] >gi|570321248|gb|ETO69196.1| ribosomal protein L13, variant [Phytophthora parasitica P1976] >gi|570976694|gb|ETP38457.1| ribosomal protein L13 [Phytophthora parasitica P10297] >gi|570976695|gb|ETP38458.1| ribosomal protein L13, variant [Phytophthora parasitica P10297]) HSP 1 Score: 155.992 bits (393), Expect = 7.914e-46 Identity = 71/130 (54.62%), Postives = 98/130 (75.38%), Query Frame = 0
Query: 30 AKKARPQWHLIDAKDQVVGRLASQIASIIRGRHKPFYCPNADCGDYVVVVNARHVTLTGRKMKDKKYYWHTMHPGGLKSRTPEQLIERGQAEEILRHAVLGMLPKNKLRNHAIKKLRVFPEKYHIYEEQL 159
A+ ++ WH++DAK QV+GRLASQ+A I+RG+HKP Y PN DCGDYVVV+NA+ + LTG K +K Y WHT HPGGLK RT ++L ER + EE+LR AV GMLP+N++R KKL++F + H + +++
Sbjct: 5 AQASKVAWHVVDAKGQVLGRLASQLAPILRGKHKPTYAPNVDCGDYVVVINAKDIVLTGNKWNNKLYRWHTGHPGGLKQRTAKELFER-KPEEVLRKAVYGMLPRNRMRALQDKKLKIFMGEEHDFVKEV 133
BLAST of EWM29017.1 vs. NCBI_GenBank
Match: gi|970635474|gb|KUF80356.1| (50S ribosomal protein L13 [Phytophthora nicotianae]) HSP 1 Score: 155.221 bits (391), Expect = 1.397e-45 Identity = 71/130 (54.62%), Postives = 97/130 (74.62%), Query Frame = 0
Query: 30 AKKARPQWHLIDAKDQVVGRLASQIASIIRGRHKPFYCPNADCGDYVVVVNARHVTLTGRKMKDKKYYWHTMHPGGLKSRTPEQLIERGQAEEILRHAVLGMLPKNKLRNHAIKKLRVFPEKYHIYEEQL 159
A+ ++ WH++DAK QV+GRLASQ+A I+RG+HKP Y PN DCGDYVVV+NA+ + LTG K +K Y WHT HPGGLK RT ++L ER EE+LR AV GMLP+N++R KKL++F + H + +++
Sbjct: 5 AQASKVAWHVVDAKGQVLGRLASQLAPILRGKHKPTYAPNVDCGDYVVVINAKDIVLTGNKWNNKLYRWHTGHPGGLKQRTAKELFER-XPEEVLRKAVYGMLPRNRMRALQDKKLKIFMGEEHDFVKEV 133 The following BLAST results are available for this feature:
BLAST of EWM29017.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|