EWM29017.1, cds1656 (CDS) Nannochloropsis gaditana

Overview
NameEWM29017.1
Unique Namecds1656
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1189562..1189696 +
Alignment locationCM002457.1:1189904..1190269 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29017.1
Product50s ribosomal protein l13
Orig transcript idgnl|cribi|Naga_101050g2.8458.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1189562..1189696 +
CM002457.1supercontigCM002457.1:1189904..1190269 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR005823Ribosomal_L13_bac-type
IPR023564Ribosomal_L13_dom
IPR005822Ribosomal_L13
Homology
BLAST of EWM29017.1 vs. NCBI_GenBank
Match: gi|585111530|gb|EWM29017.1| (50s ribosomal protein l13 [Nannochloropsis gaditana])

HSP 1 Score: 346.665 bits (888), Expect = 6.024e-121
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0
Query:    1 MSTSKAATSAASAIFTRVSSTVKDAALEAAKKARPQWHLIDAKDQVVGRLASQIASIIRGRHKPFYCPNADCGDYVVVVNARHVTLTGRKMKDKKYYWHTMHPGGLKSRTPEQLIERGQAEEILRHAVLGMLPKNKLRNHAIKKLRVFPEKYHIYEEQLRGKQSLL 166
            MSTSKAATSAASAIFTRVSSTVKDAALEAAKKARPQWHLIDAKDQVVGRLASQIASIIRGRHKPFYCPNADCGDYVVVVNARHVTLTGRKMKDKKYYWHTMHPGGLKSRTPEQLIERGQAEEILRHAVLGMLPKNKLRNHAIKKLRVFPEKYHIYEEQLRGKQSLL
Sbjct:    1 MSTSKAATSAASAIFTRVSSTVKDAALEAAKKARPQWHLIDAKDQVVGRLASQIASIIRGRHKPFYCPNADCGDYVVVVNARHVTLTGRKMKDKKYYWHTMHPGGLKSRTPEQLIERGQAEEILRHAVLGMLPKNKLRNHAIKKLRVFPEKYHIYEEQLRGKQSLL 166          
BLAST of EWM29017.1 vs. NCBI_GenBank
Match: gi|673015590|ref|XP_008861756.1| (ribosomal protein L13 [Aphanomyces invadans] >gi|574483354|gb|ETW10345.1| ribosomal protein L13 [Aphanomyces invadans])

HSP 1 Score: 164.851 bits (416), Expect = 2.487e-49
Identity = 75/130 (57.69%), Postives = 98/130 (75.38%), Query Frame = 0
Query:   30 AKKARPQWHLIDAKDQVVGRLASQIASIIRGRHKPFYCPNADCGDYVVVVNARHVTLTGRKMKDKKYYWHTMHPGGLKSRTPEQLIERGQAEEILRHAVLGMLPKNKLRNHAIKKLRVFPEKYHIYEEQL 159
            ++  R  +H++DAK QVVGRLASQ+A I+RG+HKP Y PN DCGD VVV+NA H+ LTG K KDK Y WHTM+PGGLK+RT +Q+ ++    EILR AV+GMLPKNK+R   + KL++FP   H +E +L
Sbjct:    6 SRMGRTAYHVVDAKGQVVGRLASQLAPILRGKHKPTYMPNVDCGDVVVVLNAEHIVLTGNKWKDKLYRWHTMYPGGLKTRTAQQIKDKDPG-EILRKAVMGMLPKNKMRALQVNKLKIFPGDEHTFEAEL 134          
BLAST of EWM29017.1 vs. NCBI_GenBank
Match: gi|1173955584|gb|OQS02529.1| (50S ribosomal protein L13 [Thraustotheca clavata])

HSP 1 Score: 159.458 bits (402), Expect = 3.289e-47
Identity = 71/123 (57.72%), Postives = 96/123 (78.05%), Query Frame = 0
Query:   37 WHLIDAKDQVVGRLASQIASIIRGRHKPFYCPNADCGDYVVVVNARHVTLTGRKMKDKKYYWHTMHPGGLKSRTPEQLIERGQAEEILRHAVLGMLPKNKLRNHAIKKLRVFPEKYHIYEEQL 159
            +H++DA+ QVVGRLASQ+A I+RG+HKP Y PN DCGD VVV+NA+ + LTG K  DK Y WHT +PGGLK RT +Q+ E+  + E+LR A++GMLPKNK+R   IKKL++FP + H +E++L
Sbjct:   13 YHVVDARGQVVGRLASQLAPILRGKHKPTYAPNVDCGDVVVVLNAKDIVLTGNKWDDKLYRWHTGYPGGLKERTAKQINEK-DSGEVLRKAIMGMLPKNKMRALQIKKLKIFPGEEHTFEQEL 134          
BLAST of EWM29017.1 vs. NCBI_GenBank
Match: gi|698788996|ref|XP_009827530.1| (ribosomal protein L13 [Aphanomyces astaci] >gi|574117377|gb|ETV82859.1| ribosomal protein L13 [Aphanomyces astaci])

HSP 1 Score: 157.918 bits (398), Expect = 1.168e-46
Identity = 71/123 (57.72%), Postives = 93/123 (75.61%), Query Frame = 0
Query:   37 WHLIDAKDQVVGRLASQIASIIRGRHKPFYCPNADCGDYVVVVNARHVTLTGRKMKDKKYYWHTMHPGGLKSRTPEQLIERGQAEEILRHAVLGMLPKNKLRNHAIKKLRVFPEKYHIYEEQL 159
            +H++DAK QVVGRLASQ+A I+RG+HKP Y PN DCGD VVV+NA H+ LTG K  DK Y WHTM+PGGLK+RT +Q+ ++    +ILR AV+GMLPKNK+R   + KL++FP   H +  +L
Sbjct:   13 YHVVDAKGQVVGRLASQLAPILRGKHKPTYMPNVDCGDVVVVLNAEHIVLTGNKWSDKLYRWHTMYPGGLKTRTAQQIKDK-DTTDILRKAVMGMLPKNKMRALQVDKLKIFPGDEHTFHAEL 134          
BLAST of EWM29017.1 vs. NCBI_GenBank
Match: gi|953494899|emb|CEG43540.1| (ribosomal protein l13 [Plasmopara halstedii])

HSP 1 Score: 157.532 bits (397), Expect = 1.791e-46
Identity = 71/130 (54.62%), Postives = 100/130 (76.92%), Query Frame = 0
Query:   30 AKKARPQWHLIDAKDQVVGRLASQIASIIRGRHKPFYCPNADCGDYVVVVNARHVTLTGRKMKDKKYYWHTMHPGGLKSRTPEQLIERGQAEEILRHAVLGMLPKNKLRNHAIKKLRVFPEKYHIYEEQL 159
            A+ ++  WH++DAK QV+GRLASQ+A I+RG+HKP Y PNADCGDYVVV+NA+ + LTG K  +K Y WHT HPGGLK RT ++L+ER + E++LR AV GMLP+N++R    KKL++F  + H + +++
Sbjct:    5 AQASKVMWHVVDAKGQVLGRLASQLAPILRGKHKPTYAPNADCGDYVVVINAKDIVLTGNKWNNKLYRWHTGHPGGLKQRTAKELLER-KPEQVLRKAVYGMLPRNRMRALQDKKLKIFMGETHDFVKEV 133          
BLAST of EWM29017.1 vs. NCBI_GenBank
Match: gi|1173945777|gb|OQR94370.1| (50S ribosomal protein L13 [Achlya hypogyna])

HSP 1 Score: 157.532 bits (397), Expect = 1.952e-46
Identity = 72/127 (56.69%), Postives = 93/127 (73.23%), Query Frame = 0
Query:   33 ARPQWHLIDAKDQVVGRLASQIASIIRGRHKPFYCPNADCGDYVVVVNARHVTLTGRKMKDKKYYWHTMHPGGLKSRTPEQLIERGQAEEILRHAVLGMLPKNKLRNHAIKKLRVFPEKYHIYEEQL 159
             R  +H++DAK QVVGRLASQ+A I+RG+HKP Y PN DCGDYVVV+NA+ + LTG K  DK Y WHT  PGGLK+RT +Q+ E+    ++LR AV+GMLPKNK+R   I KL++FP   H +  +L
Sbjct:    9 GRIAYHVVDAKGQVVGRLASQLAPILRGKHKPTYAPNVDCGDYVVVLNAKDIVLTGNKWDDKLYRWHTGFPGGLKTRTAKQINEK-DTTDVLRKAVMGMLPKNKMRALQINKLKIFPGDEHTFHAEL 134          
BLAST of EWM29017.1 vs. NCBI_GenBank
Match: gi|567983677|gb|ETL34064.1| (ribosomal protein L13 [Phytophthora parasitica] >gi|567983678|gb|ETL34065.1| ribosomal protein L13, variant [Phytophthora parasitica] >gi|570945057|gb|ETP10314.1| ribosomal protein L13 [Phytophthora parasitica CJ01A1] >gi|570945058|gb|ETP10315.1| ribosomal protein L13, variant [Phytophthora parasitica CJ01A1])

HSP 1 Score: 157.147 bits (396), Expect = 2.432e-46
Identity = 73/137 (53.28%), Postives = 103/137 (75.18%), Query Frame = 0
Query:   30 AKKARPQWHLIDAKDQVVGRLASQIASIIRGRHKPFYCPNADCGDYVVVVNARHVTLTGRKMKDKKYYWHTMHPGGLKSRTPEQLIERGQAEEILRHAVLGMLPKNKLRNHAIKKLRVFPEKYHIYEEQLRGKQSLL 166
            A+ ++  WH++DAK QV+GRLASQ+A I+RG+HKP Y PN DCGDYVVV+NA+ + LTG K  +K Y WHT HPGGLK RT ++L ER + EE+LR AV GMLP+N++R    KKL++F  + H + +++ G+ S++
Sbjct:    5 AQASKVAWHVVDAKGQVLGRLASQLAPILRGKHKPTYAPNVDCGDYVVVINAKDIVLTGNKWNNKLYRWHTGHPGGLKQRTAKELFER-KPEEVLRKAVYGMLPRNRMRALQDKKLKIFMGEEHDFVKEV-GENSVI 139          
BLAST of EWM29017.1 vs. NCBI_GenBank
Match: gi|695375429|ref|XP_009515542.1| (Mitochondrial/chloroplast ribosomal protein L13 [Phytophthora sojae] >gi|348688453|gb|EGZ28267.1| Mitochondrial/chloroplast ribosomal protein L13 [Phytophthora sojae])

HSP 1 Score: 156.762 bits (395), Expect = 3.161e-46
Identity = 71/126 (56.35%), Postives = 95/126 (75.40%), Query Frame = 0
Query:   30 AKKARPQWHLIDAKDQVVGRLASQIASIIRGRHKPFYCPNADCGDYVVVVNARHVTLTGRKMKDKKYYWHTMHPGGLKSRTPEQLIERGQAEEILRHAVLGMLPKNKLRNHAIKKLRVFPEKYHIY 155
            A+ ++  WH++DAK QV+GRLASQ+A I+RG+HKP Y PN DCGDYVVV+NA+ + LTG K  +K Y WHT HPGGLK RT ++L ER + EE+LR AV GMLP+N++R    KKL++F  + H +
Sbjct:    5 AQASKVAWHVVDAKGQVLGRLASQLAPILRGKHKPTYAPNVDCGDYVVVINAKDIVLTGNKWNNKLYRWHTGHPGGLKQRTAKELFER-KPEEVLRKAVFGMLPRNRMRALQDKKLKIFMGEEHDF 129          
BLAST of EWM29017.1 vs. NCBI_GenBank
Match: gi|675201413|ref|XP_008909591.1| (ribosomal protein L13 [Phytophthora parasitica INRA-310] >gi|675201415|ref|XP_008909592.1| ribosomal protein L13, variant [Phytophthora parasitica INRA-310] >gi|566017638|gb|ETI40549.1| ribosomal protein L13 [Phytophthora parasitica P1569] >gi|566017639|gb|ETI40550.1| ribosomal protein L13, variant [Phytophthora parasitica P1569] >gi|567955006|gb|ETK80639.1| ribosomal protein L13 [Phytophthora parasitica] >gi|567955007|gb|ETK80640.1| ribosomal protein L13, variant [Phytophthora parasitica] >gi|568013164|gb|ETL87341.1| ribosomal protein L13 [Phytophthora parasitica] >gi|568013165|gb|ETL87342.1| ribosomal protein L13, variant [Phytophthora parasitica] >gi|568043267|gb|ETM40562.1| ribosomal protein L13 [Phytophthora parasitica] >gi|568043268|gb|ETM40563.1| ribosomal protein L13, variant [Phytophthora parasitica] >gi|568090286|gb|ETN05121.1| ribosomal protein L13 [Phytophthora parasitica INRA-310] >gi|568090287|gb|ETN05122.1| ribosomal protein L13, variant [Phytophthora parasitica INRA-310] >gi|570321247|gb|ETO69195.1| ribosomal protein L13 [Phytophthora parasitica P1976] >gi|570321248|gb|ETO69196.1| ribosomal protein L13, variant [Phytophthora parasitica P1976] >gi|570976694|gb|ETP38457.1| ribosomal protein L13 [Phytophthora parasitica P10297] >gi|570976695|gb|ETP38458.1| ribosomal protein L13, variant [Phytophthora parasitica P10297])

HSP 1 Score: 155.992 bits (393), Expect = 7.914e-46
Identity = 71/130 (54.62%), Postives = 98/130 (75.38%), Query Frame = 0
Query:   30 AKKARPQWHLIDAKDQVVGRLASQIASIIRGRHKPFYCPNADCGDYVVVVNARHVTLTGRKMKDKKYYWHTMHPGGLKSRTPEQLIERGQAEEILRHAVLGMLPKNKLRNHAIKKLRVFPEKYHIYEEQL 159
            A+ ++  WH++DAK QV+GRLASQ+A I+RG+HKP Y PN DCGDYVVV+NA+ + LTG K  +K Y WHT HPGGLK RT ++L ER + EE+LR AV GMLP+N++R    KKL++F  + H + +++
Sbjct:    5 AQASKVAWHVVDAKGQVLGRLASQLAPILRGKHKPTYAPNVDCGDYVVVINAKDIVLTGNKWNNKLYRWHTGHPGGLKQRTAKELFER-KPEEVLRKAVYGMLPRNRMRALQDKKLKIFMGEEHDFVKEV 133          
BLAST of EWM29017.1 vs. NCBI_GenBank
Match: gi|970635474|gb|KUF80356.1| (50S ribosomal protein L13 [Phytophthora nicotianae])

HSP 1 Score: 155.221 bits (391), Expect = 1.397e-45
Identity = 71/130 (54.62%), Postives = 97/130 (74.62%), Query Frame = 0
Query:   30 AKKARPQWHLIDAKDQVVGRLASQIASIIRGRHKPFYCPNADCGDYVVVVNARHVTLTGRKMKDKKYYWHTMHPGGLKSRTPEQLIERGQAEEILRHAVLGMLPKNKLRNHAIKKLRVFPEKYHIYEEQL 159
            A+ ++  WH++DAK QV+GRLASQ+A I+RG+HKP Y PN DCGDYVVV+NA+ + LTG K  +K Y WHT HPGGLK RT ++L ER   EE+LR AV GMLP+N++R    KKL++F  + H + +++
Sbjct:    5 AQASKVAWHVVDAKGQVLGRLASQLAPILRGKHKPTYAPNVDCGDYVVVINAKDIVLTGNKWNNKLYRWHTGHPGGLKQRTAKELFER-XPEEVLRKAVYGMLPRNRMRALQDKKLKIFMGEEHDFVKEV 133          
The following BLAST results are available for this feature:
BLAST of EWM29017.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111530|gb|EWM29017.1|6.024e-121100.0050s ribosomal protein l13 [Nannochloropsis gaditan... [more]
gi|673015590|ref|XP_008861756.1|2.487e-4957.69ribosomal protein L13 [Aphanomyces invadans] >gi|5... [more]
gi|1173955584|gb|OQS02529.1|3.289e-4757.7250S ribosomal protein L13 [Thraustotheca clavata][more]
gi|698788996|ref|XP_009827530.1|1.168e-4657.72ribosomal protein L13 [Aphanomyces astaci] >gi|574... [more]
gi|953494899|emb|CEG43540.1|1.791e-4654.62ribosomal protein l13 [Plasmopara halstedii][more]
gi|1173945777|gb|OQR94370.1|1.952e-4656.6950S ribosomal protein L13 [Achlya hypogyna][more]
gi|567983677|gb|ETL34064.1|2.432e-4653.28ribosomal protein L13 [Phytophthora parasitica] >g... [more]
gi|695375429|ref|XP_009515542.1|3.161e-4656.35Mitochondrial/chloroplast ribosomal protein L13 [P... [more]
gi|675201413|ref|XP_008909591.1|7.914e-4654.62ribosomal protein L13 [Phytophthora parasitica INR... [more]
gi|970635474|gb|KUF80356.1|1.397e-4554.6250S ribosomal protein L13 [Phytophthora nicotianae... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1660rna1660Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications