rna1659, rna1659 (mRNA) Nannochloropsis gaditana

Overview
Namerna1659
Unique Namerna1659
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length628
Alignment locationCM002457.1:1188062..1189301 -

Link to JBrowse

Properties
Property NameValue
Productribosomal rna processing protein 36
Orig transcript idgnl|cribi|Naga_101050g3.8457.mrna
Orig protein idgnl|cribi|Naga_101050g3.8457
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1188062..1189301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101050g3gene1597Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29016.1cds1655Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1659rna1659-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1659 ID=rna1659|Name=rna1659|organism=Nannochloropsis gaditana|type=mRNA|length=628bp
GACGGCTGGGCTTGTGCATCTCACGAACCAGCCTGAGAGCAAGCAACTGA
ATCCTCCTTGATTACACCCGGTATGTAGCCGGGACGGCGTTTGTGTCCAC
GGTCGCTCACTTCCACGTGCACTCCCAAACATTCTTTTGTGTGTAGGGAC
CGTCATGTCTGCCGCCGCAACGACATACTGGCGCATTGCCGGCCTTACTT
ACTTGCAGTACACGAGCAAGGCCGCCGGTGTGCTGCGTGCCGCTTTGAAG
GAACCACTTCGAACAAAAACCATGGCGAAGGAGAAGATCTTCTTTAAAAG
GCTGGAATGGTCCCCCAAAATGATTGGGCAGCCCGTCGGTCCTTTGAAAG
TCGAGGTAACATCGCTCAAGTAAAATCGTGATCGAGTGCTTCGGCTCCCG
AGGTGGGGAGGGAAGATGGGTGGGAGAGGGGGGGGGCAGGAGGCGCAGGG
GGAGCACGCGATGTGGACGCCACGGGTTCGATTTGTGAGGGAGGGAGGGG
TGCAAGGGAGGGTCAGAGGCCCCCTGTCTGGTTGGAAAGGGAGGCAAGGG
CCAAGGAGAGGCGACAGGCGGGGGTTGAGGGGGGTGTCCGTCATGGAGAA
AGGAAGGAGTCTGACGCATCGGTGATTC
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protein sequence of rna1659

>rna1659-protein ID=rna1659-protein|Name=rna1659|organism=Nannochloropsis gaditana|type=polypeptide|length=378bp
MQGQVRFGSMRNRSRGGGWPGKVPAGGRGGKREDTPGKKGTKRGEEDAYM
QRIRSRANIEPSSEEEEEEESLERVSWHEKEAGMPVEERGEHVGKGHESE
TTTSSSTDDSDASSDRDGEGDERDEQVRSTLKSLPMAERLVLLASGAHGG
GRRRQLRVETVQECNDDKGKEEQPERSKGHNKHAPKEVSSKKPVSRLRPV
FPSGPVGGSQGKAARRKARDPRFDPALGKVNYEAFRKAYGFLEEYEAREI
QTLQTALGKDKGVGTRREQQQTRREGRGREEEVKEALAKLVQRRREREGF
ERKESVLQERKRAERSKVSAGKEPFYLKKKEKRRLELEDRYERLAKEGKL
KAVLEKKRKRNAAKDHRWLPRSRRRRAR
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mRNA from alignment at CM002457.1:1188062..1189301-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1659 ID=rna1659|Name=rna1659|organism=Nannochloropsis gaditana|type=mRNA|length=1240bp|location=Sequence derived from alignment at CM002457.1:1188062..1189301- (Nannochloropsis gaditana)
CCCTCGTGCTCACGCCGATACCATACCGACTCACGGCCTCGTATAACATA
GGCCTAGACAGTATCACGCAACAAAGCTACATGTGCAAATAAAAAATTCA
AGCGGCATGCAGGGACAGGTCCGTTTTGGCAGCATGCGAAACCGATCCCG
GGGAGGGGGATGGCCGGGCAAGGTTCCGGCTGGAGGGAGGGGAGGTAAAA
GGGAGGATACACCGGGAAAGAAAGGAACAAAACGAGGAGAAGAAGACGCG
TACATGCAACGTATTCGAAGTCGAGCCAACATAGAACCTTCGAGTGAGGA
GGAGGAGGAGGAGGAGTCCTTGGAGAGGGTGTCCTGGCACGAGAAGGAAG
CGGGAATGCCGGTGGAGGAACGGGGGGAGCACGTCGGGAAGGGACATGAA
TCAGAGACCACCACCTCCTCCTCGACCGACGACAGTGACGCCAGCTCAGA
CAGGGACGGGGAGGGAGATGAAAGAGATGAACAGGTACGGTCCACCTTGA
AAAGCTTGCCGATGGCGGAACGCCTGGTGTTGCTGGCTTCAGGGGCCCAC
GGCGGGGGAAGACGGCGACAACTTCGCGTGGAGACAGTCCAGGAGTGCAA
CGACGACAAGGGAAAGGAAGAACAGCCAGAGCGTTCCAAAGGACACAACA
AACATGCGCCCAAAGAAGTTTCTTCCAAGAAGCCCGTGAGCAGGCTTCGG
CCGGTCTTCCCATCGGGACCTGTGGGGGGCTCGCAAGGAAAAGCCGCACG
TCGGAAAGCCCGAGACCCGCGCTTCGACCCGGCGTTGGGGAAAGTCAATT
ATGAGGCCTTTCGAAAGGCGTACGGGTTCTTGGAGGAGTACGAAGCCCGG
GAGATTCAAACCTTGCAGACGGCGTTGGGGAAAGACAAGGGGGTAGGCAC
CAGGAGAGAGCAGCAGCAGACCCGGCGGGAAGGGAGGGGGAGGGAAGAGG
AGGTGAAGGAGGCGTTGGCCAAGTTGGTGCAACGACGCCGGGAGCGGGAA
GGTTTCGAGAGAAAGGAGTCTGTCTTGCAGGAGCGGAAGCGGGCGGAGCG
CAGTAAAGTCTCCGCTGGAAAGGAACCCTTTTATTTGAAAAAGAAAGAGA
AACGAAGGTTGGAGTTAGAGGACCGGTACGAGCGCTTGGCCAAGGAGGGG
AAATTGAAGGCGGTGTTGGAGAAGAAAAGGAAGAGGAATGCGGCGAAGGA
CCACAGGTGGTTGCCTAGGAGCCGGCGGAGGAGGGCGAGG
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Coding sequence (CDS) from alignment at CM002457.1:1188062..1189301-

>rna1659 ID=rna1659|Name=rna1659|organism=Nannochloropsis gaditana|type=CDS|length=1134bp|location=Sequence derived from alignment at CM002457.1:1188062..1189301- (Nannochloropsis gaditana)
ATGCAGGGACAGGTCCGTTTTGGCAGCATGCGAAACCGATCCCGGGGAGG
GGGATGGCCGGGCAAGGTTCCGGCTGGAGGGAGGGGAGGTAAAAGGGAGG
ATACACCGGGAAAGAAAGGAACAAAACGAGGAGAAGAAGACGCGTACATG
CAACGTATTCGAAGTCGAGCCAACATAGAACCTTCGAGTGAGGAGGAGGA
GGAGGAGGAGTCCTTGGAGAGGGTGTCCTGGCACGAGAAGGAAGCGGGAA
TGCCGGTGGAGGAACGGGGGGAGCACGTCGGGAAGGGACATGAATCAGAG
ACCACCACCTCCTCCTCGACCGACGACAGTGACGCCAGCTCAGACAGGGA
CGGGGAGGGAGATGAAAGAGATGAACAGGTACGGTCCACCTTGAAAAGCT
TGCCGATGGCGGAACGCCTGGTGTTGCTGGCTTCAGGGGCCCACGGCGGG
GGAAGACGGCGACAACTTCGCGTGGAGACAGTCCAGGAGTGCAACGACGA
CAAGGGAAAGGAAGAACAGCCAGAGCGTTCCAAAGGACACAACAAACATG
CGCCCAAAGAAGTTTCTTCCAAGAAGCCCGTGAGCAGGCTTCGGCCGGTC
TTCCCATCGGGACCTGTGGGGGGCTCGCAAGGAAAAGCCGCACGTCGGAA
AGCCCGAGACCCGCGCTTCGACCCGGCGTTGGGGAAAGTCAATTATGAGG
CCTTTCGAAAGGCGTACGGGTTCTTGGAGGAGTACGAAGCCCGGGAGATT
CAAACCTTGCAGACGGCGTTGGGGAAAGACAAGGGGGTAGGCACCAGGAG
AGAGCAGCAGCAGACCCGGCGGGAAGGGAGGGGGAGGGAAGAGGAGGTGA
AGGAGGCGTTGGCCAAGTTGGTGCAACGACGCCGGGAGCGGGAAGGTTTC
GAGAGAAAGGAGTCTGTCTTGCAGGAGCGGAAGCGGGCGGAGCGCAGTAA
AGTCTCCGCTGGAAAGGAACCCTTTTATTTGAAAAAGAAAGAGAAACGAA
GGTTGGAGTTAGAGGACCGGTACGAGCGCTTGGCCAAGGAGGGGAAATTG
AAGGCGGTGTTGGAGAAGAAAAGGAAGAGGAATGCGGCGAAGGACCACAG
GTGGTTGCCTAGGAGCCGGCGGAGGAGGGCGAGG
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Synonyms
Publications