EWM29016.1, cds1655 (CDS) Nannochloropsis gaditana

Overview
NameEWM29016.1
Unique Namecds1655
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1188062..1189195 -

Link to JBrowse

Properties
Property NameValue
Start range1188062
Start range.
Protein idEWM29016.1
Productribosomal rna processing protein 36
Partialtrue
Orig transcript idgnl|cribi|Naga_101050g3.8457.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1188062..1189195 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005730nucleolus
Vocabulary: INTERPRO
TermDefinition
IPR009292DUF947
Homology
BLAST of EWM29016.1 vs. NCBI_GenBank
Match: gi|585111529|gb|EWM29016.1| (ribosomal rna processing protein 36, partial [Nannochloropsis gaditana])

HSP 1 Score: 743.806 bits (1919), Expect = 0.000e+0
Identity = 378/378 (100.00%), Postives = 378/378 (100.00%), Query Frame = 0
Query:    1 MQGQVRFGSMRNRSRGGGWPGKVPAGGRGGKREDTPGKKGTKRGEEDAYMQRIRSRANIEPSSEEEEEEESLERVSWHEKEAGMPVEERGEHVGKGHESETTTSSSTDDSDASSDRDGEGDERDEQVRSTLKSLPMAERLVLLASGAHGGGRRRQLRVETVQECNDDKGKEEQPERSKGHNKHAPKEVSSKKPVSRLRPVFPSGPVGGSQGKAARRKARDPRFDPALGKVNYEAFRKAYGFLEEYEAREIQTLQTALGKDKGVGTRREQQQTRREGRGREEEVKEALAKLVQRRREREGFERKESVLQERKRAERSKVSAGKEPFYLKKKEKRRLELEDRYERLAKEGKLKAVLEKKRKRNAAKDHRWLPRSRRRRAR 378
            MQGQVRFGSMRNRSRGGGWPGKVPAGGRGGKREDTPGKKGTKRGEEDAYMQRIRSRANIEPSSEEEEEEESLERVSWHEKEAGMPVEERGEHVGKGHESETTTSSSTDDSDASSDRDGEGDERDEQVRSTLKSLPMAERLVLLASGAHGGGRRRQLRVETVQECNDDKGKEEQPERSKGHNKHAPKEVSSKKPVSRLRPVFPSGPVGGSQGKAARRKARDPRFDPALGKVNYEAFRKAYGFLEEYEAREIQTLQTALGKDKGVGTRREQQQTRREGRGREEEVKEALAKLVQRRREREGFERKESVLQERKRAERSKVSAGKEPFYLKKKEKRRLELEDRYERLAKEGKLKAVLEKKRKRNAAKDHRWLPRSRRRRAR
Sbjct:    1 MQGQVRFGSMRNRSRGGGWPGKVPAGGRGGKREDTPGKKGTKRGEEDAYMQRIRSRANIEPSSEEEEEEESLERVSWHEKEAGMPVEERGEHVGKGHESETTTSSSTDDSDASSDRDGEGDERDEQVRSTLKSLPMAERLVLLASGAHGGGRRRQLRVETVQECNDDKGKEEQPERSKGHNKHAPKEVSSKKPVSRLRPVFPSGPVGGSQGKAARRKARDPRFDPALGKVNYEAFRKAYGFLEEYEAREIQTLQTALGKDKGVGTRREQQQTRREGRGREEEVKEALAKLVQRRREREGFERKESVLQERKRAERSKVSAGKEPFYLKKKEKRRLELEDRYERLAKEGKLKAVLEKKRKRNAAKDHRWLPRSRRRRAR 378          
BLAST of EWM29016.1 vs. NCBI_GenBank
Match: gi|553190149|ref|XP_005855136.1| (rrna processing protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293924|gb|EKU21224.1| rrna processing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 734.561 bits (1895), Expect = 0.000e+0
Identity = 373/374 (99.73%), Postives = 373/374 (99.73%), Query Frame = 0
Query:    1 MQGQVRFGSMRNRSRGGGWPGKVPAGGRGGKREDTPGKKGTKRGEEDAYMQRIRSRANIEPSSEEEEEEESLERVSWHEKEAGMPVEERGEHVGKGHESETTTSSSTDDSDASSDRDGEGDERDEQVRSTLKSLPMAERLVLLASGAHGGGRRRQLRVETVQECNDDKGKEEQPERSKGHNKHAPKEVSSKKPVSRLRPVFPSGPVGGSQGKAARRKARDPRFDPALGKVNYEAFRKAYGFLEEYEAREIQTLQTALGKDKGVGTRREQQQTRREGRGREEEVKEALAKLVQRRREREGFERKESVLQERKRAERSKVSAGKEPFYLKKKEKRRLELEDRYERLAKEGKLKAVLEKKRKRNAAKDHRWLPRSRR 374
            MQGQVRFGSMRNRSRGGGWPGKVPAGGRGGKREDTPGKKGTKRGEEDAYMQRIRSRANIEPSSEEEEEEESLERVSWHEKEAGMPVEERGEHVGKGHESETTTSSSTDDSDASSDRDGEGDERDEQVRSTLKSLPMAERLVLLASGAHGGGRRRQLRVETVQECNDDKGKEEQPERSKGHNKHAPKEVSSKKPVSRLRPVFPSGPVGGSQGKAARRKARDPRFDPALGKVNYEAFRKAYGFLEEYEAREIQTLQTALGK KGVGTRREQQQTRREGRGREEEVKEALAKLVQRRREREGFERKESVLQERKRAERSKVSAGKEPFYLKKKEKRRLELEDRYERLAKEGKLKAVLEKKRKRNAAKDHRWLPRSRR
Sbjct:    1 MQGQVRFGSMRNRSRGGGWPGKVPAGGRGGKREDTPGKKGTKRGEEDAYMQRIRSRANIEPSSEEEEEEESLERVSWHEKEAGMPVEERGEHVGKGHESETTTSSSTDDSDASSDRDGEGDERDEQVRSTLKSLPMAERLVLLASGAHGGGRRRQLRVETVQECNDDKGKEEQPERSKGHNKHAPKEVSSKKPVSRLRPVFPSGPVGGSQGKAARRKARDPRFDPALGKVNYEAFRKAYGFLEEYEAREIQTLQTALGKGKGVGTRREQQQTRREGRGREEEVKEALAKLVQRRREREGFERKESVLQERKRAERSKVSAGKEPFYLKKKEKRRLELEDRYERLAKEGKLKAVLEKKRKRNAAKDHRWLPRSRR 374          
BLAST of EWM29016.1 vs. NCBI_GenBank
Match: gi|1173941254|gb|OQR90468.1| (hypothetical protein ACHHYP_05504 [Achlya hypogyna])

HSP 1 Score: 132.494 bits (332), Expect = 3.996e-33
Identity = 87/241 (36.10%), Postives = 132/241 (54.77%), Query Frame = 0
Query:  134 LPMAERLVLLASGAHGGGRRRQLRVETVQECNDDKGKEEQPERSKGHNKHAPKEVSSKKPVSRLRPVFPSGPVGGSQGKAARRKARDPRFDPALGKVNYEAFRKAYGFLEEYEAREIQTLQTALGKDKGVGTRREQQQTRREGRGREEEVKEALAKLVQRRREREGFERKESVLQERKRAERSKVSAGKEPFYLKKKEKRRLELEDRYERLAKEGKLKAVLEKKRKRNAAKDHRWLPRSRR 374
            L + ERL +  +G     +  Q         +D+ G E+    +K  NK+ P+E++SK+PV+R R V      G          +RDPRFD A GK+N + F+K+Y FLE+Y+  E+  ++  L        R+ + +TRRE      E+K  LA   Q R E    +R      +RKR ER  V+ GK  FYLK+K+K+++EL+ +Y+ L + G+L   + K+RK+NA KDHRWLP  R+
Sbjct:    6 LTIEERLAMKKTGFATAPKAAQ---------SDESGSEDDVRSTKRANKNCPREMTSKRPVARFREVLQIRKKG----------SRDPRFDNASGKLNEDLFKKSYAFLEDYKDAELDDVKKQL--------RKAKSKTRRE------ELKADLATRKQERAESHRADRIREATLKRKREEREAVANGKSAFYLKRKDKKQIELKAKYDELQESGRLSKFMAKRRKKNANKDHRWLPTQRK 213          
BLAST of EWM29016.1 vs. NCBI_GenBank
Match: gi|298705990|emb|CBJ29111.1| (similar to testis intracellular mediator protein [Ectocarpus siliculosus])

HSP 1 Score: 133.65 bits (335), Expect = 1.119e-32
Identity = 103/298 (34.56%), Postives = 153/298 (51.34%), Query Frame = 0
Query:  113 SSDRDGEGDERDEQVRSTLKSLP-------MAERLVLLASGAHGGGRRRQLRVETVQE--------------------------CNDDKGKEEQPERSKGHNKHAPKEVSSKKPVSRLRPVFPSGPVGGSQGKAARRKARDPRFDPALG--KVNYEAFRKAYGFLEEYEAREIQTLQTALGKDKGVGTRREQQQTRREGRGREEEVKEALAKLVQRRREREGFERKESVLQERKRAERSKVSAGKEPFYLKKKEKRRLELEDRYERLAKEGKLKAVLEKKRKRNAAKDHRWLPRSRRR 375
            +SD D   DE  ++  +  +  P       + ERL+ L+ GA    R+R +R  T  E                           N   G+ + P R+   NK+ P+E SS++ V R R V  +           R+ +RDPRF+   G  K+NY+ FRKAYGFL  Y+  EI+ L+          + ++++   R GR     ++  L +L Q R ER   +R  + ++E K+ ER  V++GK+PF+LK  EK+RL LE RYE L ++GKL   +EKKRK+NAAKDHRWLP  R++
Sbjct:   23 ASDNDSWDDEDLDENEAATEEQPNKEQGESIGERLIKLSHGAGPSRRKRHIRDSTGGEQKQANAAKTARDRTRSGIAAHQQARGGNSGSGRTKVPSRA---NKNRPQEASSRRAVGRFREVVVT----------KRKTSRDPRFEGGGGSSKLNYDIFRKAYGFLGTYQDSEIEELKK---------SLKKEKNQERSGR-----LQALLTRLQQERAERSQGDRTRTAIREAKKKEREAVASGKKPFFLKGSEKKRLSLEQRYEGLKEDGKLSKFMEKKRKKNAAKDHRWLPSKRQK 293          
BLAST of EWM29016.1 vs. NCBI_GenBank
Match: gi|635366241|emb|CCI45432.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 128.257 bits (321), Expect = 1.318e-31
Identity = 83/243 (34.16%), Postives = 127/243 (52.26%), Query Frame = 0
Query:  133 SLPMAERLVLLASGAHGGGRRRQLRVETVQECNDDKGKEEQPERSKGH--NKHAPKEVSSKKPVSRLRPVFPSGPVGGSQGKAARRKARDPRFDPALGKVNYEAFRKAYGFLEEYEAREIQTLQTALGKDKGVGTRREQQQTRREGRGREEEVKEALAKLVQRRREREGFERKESVLQERKRAERSKVSAGKEPFYLKKKEKRRLELEDRYERLAKEGKLKAVLEKKRKRNAAKDHRWLPRSR 373
            S+P+ ERL L   G+               E  +D   +   E       NK+ P E++SKKPV R R V               ++  DPRFDP  GK+N + F K+Y FL+ Y+  E+ TL+  + K K            +E +G   ++++ +  L Q  +E++   R ++ L ERKR ER  V  GK PFY+K+K+K+++EL+ +++ L + G L   + KKRK+N+ KDHRWLPR R
Sbjct:    9 SIPLQERLRLKKVGS---------------EIYNDYTTQSSTENGSFQRSNKNQPIEMTSKKPVGRFRQVVD----------VRNKRPHDPRFDPLCGKLNQDLFAKSYSFLDSYKENELDTLRKEVKKAKN-----------KERKG---DLQQKVNVLAQEIKEKKKSSRLQNALTERKRQEREAVINGKSPFYMKRKDKKKVELQIKFQELEESGNLANFMAKKRKKNSNKDHRWLPRRR 212          
BLAST of EWM29016.1 vs. NCBI_GenBank
Match: gi|325181759|emb|CCA16215.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 128.257 bits (321), Expect = 2.291e-31
Identity = 73/196 (37.24%), Postives = 113/196 (57.65%), Query Frame = 0
Query:  181 NKHAPKEVSSKKPVSRLRPVFPSGPVGGSQGKAARRKARDPRFDPALGKVNYEAFRKAYGFLEEYEAREIQTLQTALGKDKGVGTRREQQQT---RREGRGREEEVKEALAKLVQRRREREGFERKESVLQERKRAERSKVSAGKEPFYLKKKEKRRLELEDRYERLAKEGKLKAVLEKKRKRNAAKDHRWLPRSR 373
            NK+ P E++SKKPV R R V               ++  DPRFDP  GK+N + F+K+Y FL+ Y+  E++TL+  + K K    + + Q       E       +++ +  L Q  ++++  +R ++ L ERKR ER  V  GK PFY+K+KEK+ +EL+ +++ L + G L   + KKRK+N+ KDHRWLPR R
Sbjct:   44 NKNQPIEITSKKPVGRFRQVVD----------VKNKRPHDPRFDPLCGKLNQDLFQKSYSFLDSYKENELETLRKEVRKAKNKERKGDLQVCILYVTETLHSISMLQQKVNLLAQEIKQKKKSDRLQNALTERKRQEREAVMNGKNPFYMKRKEKKNVELQIKFQELEESGNLVKFMAKKRKKNSNKDHRWLPRKR 229          
BLAST of EWM29016.1 vs. NCBI_GenBank
Match: gi|695389515|ref|XP_009519457.1| (hypothetical protein PHYSODRAFT_485386 [Phytophthora sojae] >gi|348684354|gb|EGZ24169.1| hypothetical protein PHYSODRAFT_485386 [Phytophthora sojae])

HSP 1 Score: 127.872 bits (320), Expect = 2.346e-31
Identity = 75/194 (38.66%), Postives = 117/194 (60.31%), Query Frame = 0
Query:  181 NKHAPKEVSSKKPVSRLRPVFPSGPVGGSQGKAARRKARDPRFDPALGKVNYEAFRKAYGFLEEYEAREIQTLQTALGKDKGVGTRREQQQTRREGRGREEEVKEALAKLVQRRREREGFERKESVLQERKRAERSKVSAGKEPFYLKKKEKRRLELEDRYERLAKEGKLKAVLEKKRKRNAAKDHRWLPRSRR 374
            NK+ P E+SSK+ V R R V           +  +R+A DPRF+   G++N + F K+Y FL++Y+ RE+Q L+  L K K V               +++E+K  +A   Q   E++  E+ +S L +RKR ER  V++GK  FYLK+K+K++LEL+ +++ L + G+L   + KKRK+NA+KDHRWLP  R+
Sbjct:   46 NKNQPLELSSKRAVGRFRQVV----------EVKKRRALDPRFEAQSGRLNEDLFNKSYAFLDDYKQRELQELKQQLKKTKSVT--------------KKDELKHEIALRQQEMTEKQKTEKIKSALTKRKREEREAVASGKGAFYLKRKDKKKLELQAKFQDLQETGRLSKFMAKKRKKNASKDHRWLPTQRK 215          
BLAST of EWM29016.1 vs. NCBI_GenBank
Match: gi|1214708157|gb|OWZ19471.1| (hypothetical protein PHMEG_0006286 [Phytophthora megakarya])

HSP 1 Score: 126.331 bits (316), Expect = 6.636e-31
Identity = 76/199 (38.19%), Postives = 116/199 (58.29%), Query Frame = 0
Query:  176 RSKGHNKHAPKEVSSKKPVSRLRPVFPSGPVGGSQGKAARRKARDPRFDPALGKVNYEAFRKAYGFLEEYEAREIQTLQTALGKDKGVGTRREQQQTRREGRGREEEVKEALAKLVQRRREREGFERKESVLQERKRAERSKVSAGKEPFYLKKKEKRRLELEDRYERLAKEGKLKAVLEKKRKRNAAKDHRWLPRSRR 374
            R++  NK+ P E+SSK+ V R R V              +R+  DPRF+   G++N + F K+Y FL+EY+ RE+Q L+  L K K   T+              +E+K  +A   Q   E+   E+ +S L +RKR ER  V++GK  FYLK+K+K++LEL+ +++ L + G+L   + KKRK+NA+KDHRWLP  R+
Sbjct:   40 RTRRANKNQPLELSSKRAVGRYRQVVD----------VKKRRVLDPRFEAQSGRLNEDLFSKSYAFLDEYKQRELQELKQQLKKTKNATTK--------------DELKHEIALRQQEMTEKTKQEKIKSALTKRKREEREAVASGKGAFYLKRKDKKKLELQAKFQDLQETGRLSKFMAKKRKKNASKDHRWLPTQRK 214          
BLAST of EWM29016.1 vs. NCBI_GenBank
Match: gi|669144270|ref|XP_008607697.1| (hypothetical protein SDRG_03831 [Saprolegnia diclina VS20] >gi|530740631|gb|EQC38873.1| hypothetical protein SDRG_03831 [Saprolegnia diclina VS20])

HSP 1 Score: 126.331 bits (316), Expect = 8.280e-31
Identity = 80/202 (39.60%), Postives = 116/202 (57.43%), Query Frame = 0
Query:  177 SKGHNKHAPKEVSSKKPVSRLRPVFPSGPVGGSQGKAARRKA-RDPRFDPALGKVNYEAFRKAYGFLEEYEAREIQTLQTALGKDKGVGTRREQQQTRREGRGREEEVKEALAKLVQRRREREGFERKESVLQERKRAERSKVSAGKEPFYLKKKEKRRLELEDRYERLAKEGKLKAVLEKKRKRNAAKDHRWLPRSRRRRA 377
            +K  NK+ P+E++SK+PV+R R V              R+KA RDPRFD A GK+N + F+KAY FLE+Y+  E+  ++  L K K                 R+  +KE LA   Q R E    ++     Q+RKR ER  V+ GK  FYLK+K+K+++EL+ +Y+ L + G+L   + K+RK+NA KDHRWLP  R+  A
Sbjct:   44 TKRANKNCPREMTSKRPVARFREVLQ-----------IRKKASRDPRFDAASGKLNEDLFKKAYTFLEDYKDAELDEVKKQLKKAKSAT--------------RKAALKEELASRKQERAETHRADKIREATQKRKREEREAVANGKSAFYLKRKDKKQVELKAKYDELQESGRLSKFMAKRRKKNANKDHRWLPTQRKETA 220          
BLAST of EWM29016.1 vs. NCBI_GenBank
Match: gi|1183327844|gb|ORX57598.1| (DUF947-domain-containing protein [Hesseltinella vesiculosa])

HSP 1 Score: 124.02 bits (310), Expect = 3.002e-29
Identity = 78/194 (40.21%), Postives = 109/194 (56.19%), Query Frame = 0
Query:  181 NKHAPKEVSSKKPVSRLRPVFPSGPVGGSQGKAARRKARDPRFDPALGKVNYEAFRKAYGFLEEYEAREIQTLQTALGKDKGVGTRREQQQTRREGRGREEEVKEALAKLVQRRREREGFERKESVLQERKRAERSKVSAGKEPFYLKKKEKRRLELEDRYERLAKEGKLKAVLEKKRKRNAAKDHRWLPRSRR 374
            +KH+P E+SSKK VSRLR V  S  V          K RDPRFD   GK+N + F K Y F+ +Y+  E + L+  L K K +  +               E+K  L K+  + +     +RK+ + +ERK+AE   V  GK P++LK+ EKR+LEL D+Y +L  E  +  +LEK+RK+NA KDHR LP  RR
Sbjct:  107 SKHSPMEMSSKKAVSRLRNVVESTSV----------KRRDPRFDKLSGKLNQDLFEKTYDFVNDYKKEEQEQLKKRLAKTKDLDQK--------------AEIKAELTKMKSQEKAALDKKRKQDLARERKKAEADLVKQGKTPYFLKRSEKRKLELMDKYSQLG-EKSVDRILEKRRKKNANKDHRHLPFKRR 275          
The following BLAST results are available for this feature:
BLAST of EWM29016.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111529|gb|EWM29016.1|0.000e+0100.00ribosomal rna processing protein 36, partial [Nann... [more]
gi|553190149|ref|XP_005855136.1|0.000e+099.73rrna processing protein, partial [Nannochloropsis ... [more]
gi|1173941254|gb|OQR90468.1|3.996e-3336.10hypothetical protein ACHHYP_05504 [Achlya hypogyna... [more]
gi|298705990|emb|CBJ29111.1|1.119e-3234.56similar to testis intracellular mediator protein [... [more]
gi|635366241|emb|CCI45432.1|1.318e-3134.16unnamed protein product [Albugo candida][more]
gi|325181759|emb|CCA16215.1|2.291e-3137.24conserved hypothetical protein [Albugo laibachii N... [more]
gi|695389515|ref|XP_009519457.1|2.346e-3138.66hypothetical protein PHYSODRAFT_485386 [Phytophtho... [more]
gi|1214708157|gb|OWZ19471.1|6.636e-3138.19hypothetical protein PHMEG_0006286 [Phytophthora m... [more]
gi|669144270|ref|XP_008607697.1|8.280e-3139.60hypothetical protein SDRG_03831 [Saprolegnia dicli... [more]
gi|1183327844|gb|ORX57598.1|3.002e-2940.21DUF947-domain-containing protein [Hesseltinella ve... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1659rna1659Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications