EWM29016.1, cds1655 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29016.1 vs. NCBI_GenBank
Match: gi|585111529|gb|EWM29016.1| (ribosomal rna processing protein 36, partial [Nannochloropsis gaditana]) HSP 1 Score: 743.806 bits (1919), Expect = 0.000e+0 Identity = 378/378 (100.00%), Postives = 378/378 (100.00%), Query Frame = 0 Query: 1 MQGQVRFGSMRNRSRGGGWPGKVPAGGRGGKREDTPGKKGTKRGEEDAYMQRIRSRANIEPSSEEEEEEESLERVSWHEKEAGMPVEERGEHVGKGHESETTTSSSTDDSDASSDRDGEGDERDEQVRSTLKSLPMAERLVLLASGAHGGGRRRQLRVETVQECNDDKGKEEQPERSKGHNKHAPKEVSSKKPVSRLRPVFPSGPVGGSQGKAARRKARDPRFDPALGKVNYEAFRKAYGFLEEYEAREIQTLQTALGKDKGVGTRREQQQTRREGRGREEEVKEALAKLVQRRREREGFERKESVLQERKRAERSKVSAGKEPFYLKKKEKRRLELEDRYERLAKEGKLKAVLEKKRKRNAAKDHRWLPRSRRRRAR 378 MQGQVRFGSMRNRSRGGGWPGKVPAGGRGGKREDTPGKKGTKRGEEDAYMQRIRSRANIEPSSEEEEEEESLERVSWHEKEAGMPVEERGEHVGKGHESETTTSSSTDDSDASSDRDGEGDERDEQVRSTLKSLPMAERLVLLASGAHGGGRRRQLRVETVQECNDDKGKEEQPERSKGHNKHAPKEVSSKKPVSRLRPVFPSGPVGGSQGKAARRKARDPRFDPALGKVNYEAFRKAYGFLEEYEAREIQTLQTALGKDKGVGTRREQQQTRREGRGREEEVKEALAKLVQRRREREGFERKESVLQERKRAERSKVSAGKEPFYLKKKEKRRLELEDRYERLAKEGKLKAVLEKKRKRNAAKDHRWLPRSRRRRAR Sbjct: 1 MQGQVRFGSMRNRSRGGGWPGKVPAGGRGGKREDTPGKKGTKRGEEDAYMQRIRSRANIEPSSEEEEEEESLERVSWHEKEAGMPVEERGEHVGKGHESETTTSSSTDDSDASSDRDGEGDERDEQVRSTLKSLPMAERLVLLASGAHGGGRRRQLRVETVQECNDDKGKEEQPERSKGHNKHAPKEVSSKKPVSRLRPVFPSGPVGGSQGKAARRKARDPRFDPALGKVNYEAFRKAYGFLEEYEAREIQTLQTALGKDKGVGTRREQQQTRREGRGREEEVKEALAKLVQRRREREGFERKESVLQERKRAERSKVSAGKEPFYLKKKEKRRLELEDRYERLAKEGKLKAVLEKKRKRNAAKDHRWLPRSRRRRAR 378
BLAST of EWM29016.1 vs. NCBI_GenBank
Match: gi|553190149|ref|XP_005855136.1| (rrna processing protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293924|gb|EKU21224.1| rrna processing protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 734.561 bits (1895), Expect = 0.000e+0 Identity = 373/374 (99.73%), Postives = 373/374 (99.73%), Query Frame = 0 Query: 1 MQGQVRFGSMRNRSRGGGWPGKVPAGGRGGKREDTPGKKGTKRGEEDAYMQRIRSRANIEPSSEEEEEEESLERVSWHEKEAGMPVEERGEHVGKGHESETTTSSSTDDSDASSDRDGEGDERDEQVRSTLKSLPMAERLVLLASGAHGGGRRRQLRVETVQECNDDKGKEEQPERSKGHNKHAPKEVSSKKPVSRLRPVFPSGPVGGSQGKAARRKARDPRFDPALGKVNYEAFRKAYGFLEEYEAREIQTLQTALGKDKGVGTRREQQQTRREGRGREEEVKEALAKLVQRRREREGFERKESVLQERKRAERSKVSAGKEPFYLKKKEKRRLELEDRYERLAKEGKLKAVLEKKRKRNAAKDHRWLPRSRR 374 MQGQVRFGSMRNRSRGGGWPGKVPAGGRGGKREDTPGKKGTKRGEEDAYMQRIRSRANIEPSSEEEEEEESLERVSWHEKEAGMPVEERGEHVGKGHESETTTSSSTDDSDASSDRDGEGDERDEQVRSTLKSLPMAERLVLLASGAHGGGRRRQLRVETVQECNDDKGKEEQPERSKGHNKHAPKEVSSKKPVSRLRPVFPSGPVGGSQGKAARRKARDPRFDPALGKVNYEAFRKAYGFLEEYEAREIQTLQTALGK KGVGTRREQQQTRREGRGREEEVKEALAKLVQRRREREGFERKESVLQERKRAERSKVSAGKEPFYLKKKEKRRLELEDRYERLAKEGKLKAVLEKKRKRNAAKDHRWLPRSRR Sbjct: 1 MQGQVRFGSMRNRSRGGGWPGKVPAGGRGGKREDTPGKKGTKRGEEDAYMQRIRSRANIEPSSEEEEEEESLERVSWHEKEAGMPVEERGEHVGKGHESETTTSSSTDDSDASSDRDGEGDERDEQVRSTLKSLPMAERLVLLASGAHGGGRRRQLRVETVQECNDDKGKEEQPERSKGHNKHAPKEVSSKKPVSRLRPVFPSGPVGGSQGKAARRKARDPRFDPALGKVNYEAFRKAYGFLEEYEAREIQTLQTALGKGKGVGTRREQQQTRREGRGREEEVKEALAKLVQRRREREGFERKESVLQERKRAERSKVSAGKEPFYLKKKEKRRLELEDRYERLAKEGKLKAVLEKKRKRNAAKDHRWLPRSRR 374
BLAST of EWM29016.1 vs. NCBI_GenBank
Match: gi|1173941254|gb|OQR90468.1| (hypothetical protein ACHHYP_05504 [Achlya hypogyna]) HSP 1 Score: 132.494 bits (332), Expect = 3.996e-33 Identity = 87/241 (36.10%), Postives = 132/241 (54.77%), Query Frame = 0 Query: 134 LPMAERLVLLASGAHGGGRRRQLRVETVQECNDDKGKEEQPERSKGHNKHAPKEVSSKKPVSRLRPVFPSGPVGGSQGKAARRKARDPRFDPALGKVNYEAFRKAYGFLEEYEAREIQTLQTALGKDKGVGTRREQQQTRREGRGREEEVKEALAKLVQRRREREGFERKESVLQERKRAERSKVSAGKEPFYLKKKEKRRLELEDRYERLAKEGKLKAVLEKKRKRNAAKDHRWLPRSRR 374 L + ERL + +G + Q +D+ G E+ +K NK+ P+E++SK+PV+R R V G +RDPRFD A GK+N + F+K+Y FLE+Y+ E+ ++ L R+ + +TRRE E+K LA Q R E +R +RKR ER V+ GK FYLK+K+K+++EL+ +Y+ L + G+L + K+RK+NA KDHRWLP R+ Sbjct: 6 LTIEERLAMKKTGFATAPKAAQ---------SDESGSEDDVRSTKRANKNCPREMTSKRPVARFREVLQIRKKG----------SRDPRFDNASGKLNEDLFKKSYAFLEDYKDAELDDVKKQL--------RKAKSKTRRE------ELKADLATRKQERAESHRADRIREATLKRKREEREAVANGKSAFYLKRKDKKQIELKAKYDELQESGRLSKFMAKRRKKNANKDHRWLPTQRK 213
BLAST of EWM29016.1 vs. NCBI_GenBank
Match: gi|298705990|emb|CBJ29111.1| (similar to testis intracellular mediator protein [Ectocarpus siliculosus]) HSP 1 Score: 133.65 bits (335), Expect = 1.119e-32 Identity = 103/298 (34.56%), Postives = 153/298 (51.34%), Query Frame = 0 Query: 113 SSDRDGEGDERDEQVRSTLKSLP-------MAERLVLLASGAHGGGRRRQLRVETVQE--------------------------CNDDKGKEEQPERSKGHNKHAPKEVSSKKPVSRLRPVFPSGPVGGSQGKAARRKARDPRFDPALG--KVNYEAFRKAYGFLEEYEAREIQTLQTALGKDKGVGTRREQQQTRREGRGREEEVKEALAKLVQRRREREGFERKESVLQERKRAERSKVSAGKEPFYLKKKEKRRLELEDRYERLAKEGKLKAVLEKKRKRNAAKDHRWLPRSRRR 375 +SD D DE ++ + + P + ERL+ L+ GA R+R +R T E N G+ + P R+ NK+ P+E SS++ V R R V + R+ +RDPRF+ G K+NY+ FRKAYGFL Y+ EI+ L+ + ++++ R GR ++ L +L Q R ER +R + ++E K+ ER V++GK+PF+LK EK+RL LE RYE L ++GKL +EKKRK+NAAKDHRWLP R++ Sbjct: 23 ASDNDSWDDEDLDENEAATEEQPNKEQGESIGERLIKLSHGAGPSRRKRHIRDSTGGEQKQANAAKTARDRTRSGIAAHQQARGGNSGSGRTKVPSRA---NKNRPQEASSRRAVGRFREVVVT----------KRKTSRDPRFEGGGGSSKLNYDIFRKAYGFLGTYQDSEIEELKK---------SLKKEKNQERSGR-----LQALLTRLQQERAERSQGDRTRTAIREAKKKEREAVASGKKPFFLKGSEKKRLSLEQRYEGLKEDGKLSKFMEKKRKKNAAKDHRWLPSKRQK 293
BLAST of EWM29016.1 vs. NCBI_GenBank
Match: gi|635366241|emb|CCI45432.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 128.257 bits (321), Expect = 1.318e-31 Identity = 83/243 (34.16%), Postives = 127/243 (52.26%), Query Frame = 0 Query: 133 SLPMAERLVLLASGAHGGGRRRQLRVETVQECNDDKGKEEQPERSKGH--NKHAPKEVSSKKPVSRLRPVFPSGPVGGSQGKAARRKARDPRFDPALGKVNYEAFRKAYGFLEEYEAREIQTLQTALGKDKGVGTRREQQQTRREGRGREEEVKEALAKLVQRRREREGFERKESVLQERKRAERSKVSAGKEPFYLKKKEKRRLELEDRYERLAKEGKLKAVLEKKRKRNAAKDHRWLPRSR 373 S+P+ ERL L G+ E +D + E NK+ P E++SKKPV R R V ++ DPRFDP GK+N + F K+Y FL+ Y+ E+ TL+ + K K +E +G ++++ + L Q +E++ R ++ L ERKR ER V GK PFY+K+K+K+++EL+ +++ L + G L + KKRK+N+ KDHRWLPR R Sbjct: 9 SIPLQERLRLKKVGS---------------EIYNDYTTQSSTENGSFQRSNKNQPIEMTSKKPVGRFRQVVD----------VRNKRPHDPRFDPLCGKLNQDLFAKSYSFLDSYKENELDTLRKEVKKAKN-----------KERKG---DLQQKVNVLAQEIKEKKKSSRLQNALTERKRQEREAVINGKSPFYMKRKDKKKVELQIKFQELEESGNLANFMAKKRKKNSNKDHRWLPRRR 212
BLAST of EWM29016.1 vs. NCBI_GenBank
Match: gi|325181759|emb|CCA16215.1| (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 128.257 bits (321), Expect = 2.291e-31 Identity = 73/196 (37.24%), Postives = 113/196 (57.65%), Query Frame = 0 Query: 181 NKHAPKEVSSKKPVSRLRPVFPSGPVGGSQGKAARRKARDPRFDPALGKVNYEAFRKAYGFLEEYEAREIQTLQTALGKDKGVGTRREQQQT---RREGRGREEEVKEALAKLVQRRREREGFERKESVLQERKRAERSKVSAGKEPFYLKKKEKRRLELEDRYERLAKEGKLKAVLEKKRKRNAAKDHRWLPRSR 373 NK+ P E++SKKPV R R V ++ DPRFDP GK+N + F+K+Y FL+ Y+ E++TL+ + K K + + Q E +++ + L Q ++++ +R ++ L ERKR ER V GK PFY+K+KEK+ +EL+ +++ L + G L + KKRK+N+ KDHRWLPR R Sbjct: 44 NKNQPIEITSKKPVGRFRQVVD----------VKNKRPHDPRFDPLCGKLNQDLFQKSYSFLDSYKENELETLRKEVRKAKNKERKGDLQVCILYVTETLHSISMLQQKVNLLAQEIKQKKKSDRLQNALTERKRQEREAVMNGKNPFYMKRKEKKNVELQIKFQELEESGNLVKFMAKKRKKNSNKDHRWLPRKR 229
BLAST of EWM29016.1 vs. NCBI_GenBank
Match: gi|695389515|ref|XP_009519457.1| (hypothetical protein PHYSODRAFT_485386 [Phytophthora sojae] >gi|348684354|gb|EGZ24169.1| hypothetical protein PHYSODRAFT_485386 [Phytophthora sojae]) HSP 1 Score: 127.872 bits (320), Expect = 2.346e-31 Identity = 75/194 (38.66%), Postives = 117/194 (60.31%), Query Frame = 0 Query: 181 NKHAPKEVSSKKPVSRLRPVFPSGPVGGSQGKAARRKARDPRFDPALGKVNYEAFRKAYGFLEEYEAREIQTLQTALGKDKGVGTRREQQQTRREGRGREEEVKEALAKLVQRRREREGFERKESVLQERKRAERSKVSAGKEPFYLKKKEKRRLELEDRYERLAKEGKLKAVLEKKRKRNAAKDHRWLPRSRR 374 NK+ P E+SSK+ V R R V + +R+A DPRF+ G++N + F K+Y FL++Y+ RE+Q L+ L K K V +++E+K +A Q E++ E+ +S L +RKR ER V++GK FYLK+K+K++LEL+ +++ L + G+L + KKRK+NA+KDHRWLP R+ Sbjct: 46 NKNQPLELSSKRAVGRFRQVV----------EVKKRRALDPRFEAQSGRLNEDLFNKSYAFLDDYKQRELQELKQQLKKTKSVT--------------KKDELKHEIALRQQEMTEKQKTEKIKSALTKRKREEREAVASGKGAFYLKRKDKKKLELQAKFQDLQETGRLSKFMAKKRKKNASKDHRWLPTQRK 215
BLAST of EWM29016.1 vs. NCBI_GenBank
Match: gi|1214708157|gb|OWZ19471.1| (hypothetical protein PHMEG_0006286 [Phytophthora megakarya]) HSP 1 Score: 126.331 bits (316), Expect = 6.636e-31 Identity = 76/199 (38.19%), Postives = 116/199 (58.29%), Query Frame = 0 Query: 176 RSKGHNKHAPKEVSSKKPVSRLRPVFPSGPVGGSQGKAARRKARDPRFDPALGKVNYEAFRKAYGFLEEYEAREIQTLQTALGKDKGVGTRREQQQTRREGRGREEEVKEALAKLVQRRREREGFERKESVLQERKRAERSKVSAGKEPFYLKKKEKRRLELEDRYERLAKEGKLKAVLEKKRKRNAAKDHRWLPRSRR 374 R++ NK+ P E+SSK+ V R R V +R+ DPRF+ G++N + F K+Y FL+EY+ RE+Q L+ L K K T+ +E+K +A Q E+ E+ +S L +RKR ER V++GK FYLK+K+K++LEL+ +++ L + G+L + KKRK+NA+KDHRWLP R+ Sbjct: 40 RTRRANKNQPLELSSKRAVGRYRQVVD----------VKKRRVLDPRFEAQSGRLNEDLFSKSYAFLDEYKQRELQELKQQLKKTKNATTK--------------DELKHEIALRQQEMTEKTKQEKIKSALTKRKREEREAVASGKGAFYLKRKDKKKLELQAKFQDLQETGRLSKFMAKKRKKNASKDHRWLPTQRK 214
BLAST of EWM29016.1 vs. NCBI_GenBank
Match: gi|669144270|ref|XP_008607697.1| (hypothetical protein SDRG_03831 [Saprolegnia diclina VS20] >gi|530740631|gb|EQC38873.1| hypothetical protein SDRG_03831 [Saprolegnia diclina VS20]) HSP 1 Score: 126.331 bits (316), Expect = 8.280e-31 Identity = 80/202 (39.60%), Postives = 116/202 (57.43%), Query Frame = 0 Query: 177 SKGHNKHAPKEVSSKKPVSRLRPVFPSGPVGGSQGKAARRKA-RDPRFDPALGKVNYEAFRKAYGFLEEYEAREIQTLQTALGKDKGVGTRREQQQTRREGRGREEEVKEALAKLVQRRREREGFERKESVLQERKRAERSKVSAGKEPFYLKKKEKRRLELEDRYERLAKEGKLKAVLEKKRKRNAAKDHRWLPRSRRRRA 377 +K NK+ P+E++SK+PV+R R V R+KA RDPRFD A GK+N + F+KAY FLE+Y+ E+ ++ L K K R+ +KE LA Q R E ++ Q+RKR ER V+ GK FYLK+K+K+++EL+ +Y+ L + G+L + K+RK+NA KDHRWLP R+ A Sbjct: 44 TKRANKNCPREMTSKRPVARFREVLQ-----------IRKKASRDPRFDAASGKLNEDLFKKAYTFLEDYKDAELDEVKKQLKKAKSAT--------------RKAALKEELASRKQERAETHRADKIREATQKRKREEREAVANGKSAFYLKRKDKKQVELKAKYDELQESGRLSKFMAKRRKKNANKDHRWLPTQRKETA 220
BLAST of EWM29016.1 vs. NCBI_GenBank
Match: gi|1183327844|gb|ORX57598.1| (DUF947-domain-containing protein [Hesseltinella vesiculosa]) HSP 1 Score: 124.02 bits (310), Expect = 3.002e-29 Identity = 78/194 (40.21%), Postives = 109/194 (56.19%), Query Frame = 0 Query: 181 NKHAPKEVSSKKPVSRLRPVFPSGPVGGSQGKAARRKARDPRFDPALGKVNYEAFRKAYGFLEEYEAREIQTLQTALGKDKGVGTRREQQQTRREGRGREEEVKEALAKLVQRRREREGFERKESVLQERKRAERSKVSAGKEPFYLKKKEKRRLELEDRYERLAKEGKLKAVLEKKRKRNAAKDHRWLPRSRR 374 +KH+P E+SSKK VSRLR V S V K RDPRFD GK+N + F K Y F+ +Y+ E + L+ L K K + + E+K L K+ + + +RK+ + +ERK+AE V GK P++LK+ EKR+LEL D+Y +L E + +LEK+RK+NA KDHR LP RR Sbjct: 107 SKHSPMEMSSKKAVSRLRNVVESTSV----------KRRDPRFDKLSGKLNQDLFEKTYDFVNDYKKEEQEQLKKRLAKTKDLDQK--------------AEIKAELTKMKSQEKAALDKKRKQDLARERKKAEADLVKQGKTPYFLKRSEKRKLELMDKYSQLG-EKSVDRILEKRRKKNANKDHRHLPFKRR 275 The following BLAST results are available for this feature:
BLAST of EWM29016.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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