rna1658, rna1658 (mRNA) Nannochloropsis gaditana

Overview
Namerna1658
Unique Namerna1658
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1275
Alignment locationCM002457.1:1183065..1184172 +

Link to JBrowse

Properties
Property NameValue
Productatp synthase subunit epsilon
Orig transcript idgnl|cribi|Naga_100477g3.541.mrna
Orig protein idgnl|cribi|Naga_100477g3.541
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1183065..1184172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100477g3gene1595Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1658rna1658-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29021.1cds1654Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1658 ID=rna1658|Name=rna1658|organism=Nannochloropsis gaditana|type=mRNA|length=1275bp
ATGAAGGCCAGTGTGCGTGTGGCTGTTCTTCTCTTCCCCTTTTTAATCGC
TGCGGTGGTGGATGGATTCATACCTTTGCCCCCCACCTGCGCCTGGGCTT
CGTCCTCCGCCTCCTCCTCTCCTTCCTCTAACCTTCCTGCCTTTGAAGAT
CGCGCAAGAATACCTTGCTCGCCCTCAGGTGCCCGCCACCGTGCTCTGAA
CATTGCTTCGTCTGCTGCCTCCCTTGGAGGGATGAGTGACTCCTCTTCTT
CCTCGTCCTCCTCCTCTACCTCCTCCTCGTCTCCATCGTCCTCCCCTCCC
TCCCCTTCCTCCACTCCACCATCCGATGCCGCTGCCGCCGCCGCCGCCGC
TGCTGCCGTCGGCATGGTGACAGGGGGGATCAAACTGGAACGAGTGAAAA
ACATCCGTGACCTCTCCTCCGTGCGTGGGTCCGGGATTAAAGCGGGACGC
ATTTATCGCACAGGATACCTGAGCAAGGCTTCGGAGGAAGACATCAAATT
CATTCGAGAAACGGCCAAATTCAAAACCTTGATCGACCTGCGCTCTGAGA
AGGAGCTGGGAATGGACGATCAGATGAACAGCAGTGCTACGAAACGTGGG
TGTGGGGGTAAGAATGCGGAGACCGTGCGTGTGGATCCCTCCCCGGCCCC
CTCTACCGGCCAGACCTCCGTATTGCAACGACACTTCATCTCCGTCATTG
ACGAAGGCATTTATCAGCGGGGGGTTTTTAAACGGCTGGCCAAGCGGAAA
AAGGCGGCCGCCCTCTTCCTCATCACGGGCGGCGCTGTCAGCAAACGCGC
CCGCCGTCGCGCCCGTTCCATCTTTTTGAACTACATAAACGACGCCGGCC
TTCCCCTCCTTAACGACCTTCTCCTTAATTACTCCGGCCCCGCCCTCCGC
CGGGTGTTGGAGCTCTTGAGCGACAAGGAACGCTACCCAATCGCCTTGTA
CTGCACCGCTGGGAAAGACAGGACGGGTTTGGTCATCCTCCTCCTCCTGG
CCTCTCTGGGCGTGGACTCGGGAGCCATCGCCGAAGACTACGTCCTCTCC
GACACTGCCTATGCTGACTTGAGCGACGCCAAAGCCATGGTCGGGGCGTT
GGAGCAGGTTAACAATCTCGATCCAGAGAAATTTCTGCGCGCACCCAGAT
CGGTGATCGAGCACACCCTTGCCTATATTGAGAAAAAGTTCGGGTCCATT
GAAGGTTACCTGGATCAGATCGGGTTCACGGAGGATAAGCGAGTGGCGTT
GAAGAAGGCGTTGCGGGAGGGGTAG
back to top

protein sequence of rna1658

>rna1658-protein ID=rna1658-protein|Name=rna1658|organism=Nannochloropsis gaditana|type=polypeptide|length=72bp
MSAAATTYWRIAGLTYLQYTSKAAGVLRAALKEPLRTKTMAKEKIFFKRL
EWSPKMIGQPVGPLKVEVTSLK
back to top

mRNA from alignment at CM002457.1:1183065..1184172+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1658 ID=rna1658|Name=rna1658|organism=Nannochloropsis gaditana|type=mRNA|length=1108bp|location=Sequence derived from alignment at CM002457.1:1183065..1184172+ (Nannochloropsis gaditana)
GACGGCTGGGCTTGTGCATCTCACGAACCAGCCTGAGAGCAAGCAACTGA
ATCCTCCTTGATTACACCCGGTATGTAGCCGGGACGGCGTTTGTGTCCAC
GGTCGCTCACTTCCACGTGCACTCCCAAACATTCTTTTGTGTGTAGGGAC
CGTCATGTCTGCCGCCGCAACGACATACTGGCGCATTGCCGGCCTTACTT
ACTTGCAGGTaagctgccccccctcccgtccttttcctccctccttcctc
tcctccttccacttcaTCCCGTGAGATGATTCATGTCTTTTCGTTCACGC
CATACATTCCATCGTCACAGTACACGAGCAAGGCCGCCGGTGTGCTGCGT
GCCGCTTTGAAGGTGCGAAGccgacggagagggaggaaggaataaAAAAG
TgggaggacgtgaaaaaTGCGTATGAGCTTGTGCGATCGACATctgtcct
tttccctgtGTGTATGTGTTTTGAAGAAGCATTCTCATGGAAGGAAATGA
ACGGAGAGGCCAAGGTAGTCAGGGAGGTCCTCGTAGCGTACAGAGAAAGG
TATCTGAGCccttccttttgccccttcctcttcccacttCTCATCAGGAA
CCACTTCGAACAAAAACCatggcgaaggagaagatctTCTTTAAAAGGCT
GGAATGGTCCCCCAAAATGATTGGGCAGCCCGTCGGTCCTTTgaaaggtg
aggaaggaaagggaggaggcaggcgggcggACGAGCGGCACGGGCGGGTG
CACGGATGGCTGATGTGTGGACGAGTTTCATCCATGCCTTCTCATCTTCT
TTCATTTATTTTAATGCTCACCACCCTCAGTCGAGGTAACATCGCTCAAG
TAAAATCGTGATCGAGTGCTTCGGCTCccgaggtggggagggaagatggg
tgggagagggggggggcaggaggcgcagggGGAGCACGCGATGTGGACGC
CACGGGTTCGAtttgtgagggagggaggggtgcaaGGGAGGGTCAGAGGC
CCCCTGTCtggttggaaagggaggcaagggccaAGGAGAGGCGACAGGCG
GGGGTTGAGGGGGGTGTCCGTcatggagaaaggaaggagtcTGACGCATC
GGTGATTC
back to top

Coding sequence (CDS) from alignment at CM002457.1:1183065..1184172+

>rna1658 ID=rna1658|Name=rna1658|organism=Nannochloropsis gaditana|type=CDS|length=876bp|location=Sequence derived from alignment at CM002457.1:1183065..1184172+ (Nannochloropsis gaditana)
ATGTCTGCCGCCGCAACGACATACTGGCGCATTGCCGGCCTTACTTACTT
GCAGTACACGAGCAAGGCCGCCGGTGTGCTGCGTGCCGCTTTGAAGGAAC
CACTTCGAACAAAAACCatggcgaaggagaagatctTCTTTAAAAGGCTG
GAATGGTCCCCCAAAATGATTGGGCAGCCCGTCGGTCCTTTgaaagTCGA
GGTAACATCGCTCAAGTAAATGTCTGCCGCCGCAACGACATACTGGCGCA
TTGCCGGCCTTACTTACTTGCAGTACACGAGCAAGGCCGCCGGTGTGCTG
CGTGCCGCTTTGAAGGAACCACTTCGAACAAAAACCatggcgaaggagaa
gatctTCTTTAAAAGGCTGGAATGGTCCCCCAAAATGATTGGGCAGCCCG
TCGGTCCTTTgaaagTCGAGGTAACATCGCTCAAGTAAATGTCTGCCGCC
GCAACGACATACTGGCGCATTGCCGGCCTTACTTACTTGCAGTACACGAG
CAAGGCCGCCGGTGTGCTGCGTGCCGCTTTGAAGGAACCACTTCGAACAA
AAACCatggcgaaggagaagatctTCTTTAAAAGGCTGGAATGGTCCCCC
AAAATGATTGGGCAGCCCGTCGGTCCTTTgaaagTCGAGGTAACATCGCT
CAAGTAAATGTCTGCCGCCGCAACGACATACTGGCGCATTGCCGGCCTTA
CTTACTTGCAGTACACGAGCAAGGCCGCCGGTGTGCTGCGTGCCGCTTTG
AAGGAACCACTTCGAACAAAAACCatggcgaaggagaagatctTCTTTAA
AAGGCTGGAATGGTCCCCCAAAATGATTGGGCAGCCCGTCGGTCCTTTga
aagTCGAGGTAACATCGCTCAAGTAA
back to top
Synonyms
Publications