EWM29021.1, cds1654 (CDS) Nannochloropsis gaditana

Overview
NameEWM29021.1
Unique Namecds1654
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1183219..1183272 +
Alignment locationCM002457.1:1183385..1183426 +
Alignment locationCM002457.1:1183662..1183761 +
Alignment locationCM002457.1:1183895..1183917 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29021.1
Productatp synthase subunit epsilon
Orig transcript idgnl|cribi|Naga_100477g3.541.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1183219..1183272 +
CM002457.1supercontigCM002457.1:1183385..1183426 +
CM002457.1supercontigCM002457.1:1183662..1183761 +
CM002457.1supercontigCM002457.1:1183895..1183917 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0016740transferase activity
GO:0046933proton-transporting ATP synthase activity, rotational mechanism
GO:0046961proton-transporting ATPase activity, rotational mechanism
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0015986ATP synthesis coupled proton transport
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO:0016020membrane
GO:0000275mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)
Vocabulary: INTERPRO
TermDefinition
IPR006721ATPase_F1-cplx_esu_mt
Homology
[Close]
BLAST of EWM29021.1 vs. NCBI_GenBank
Match: gi|585111536|gb|EWM29021.1| (atp synthase subunit epsilon [Nannochloropsis gaditana])

HSP 1 Score: 144.436 bits (363), Expect = 6.808e-44
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 
Query:    1 MSAAATTYWRIAGLTYLQYTSKAAGVLRAALKEPLRTKTMAKEKIFFKRLEWSPKMIGQPVGPLKVEVTSLK 72
            MSAAATTYWRIAGLTYLQYTSKAAGVLRAALKEPLRTKTMAKEKIFFKRLEWSPKMIGQPVGPLKVEVTSLK
Sbjct:    1 MSAAATTYWRIAGLTYLQYTSKAAGVLRAALKEPLRTKTMAKEKIFFKRLEWSPKMIGQPVGPLKVEVTSLK 72
[Close]
BLAST of EWM29021.1 vs. NCBI_GenBank
Match: gi|255071761|ref|XP_002499555.1| (H+-or Na+-translocating f-type, v-type and A-type ATPase superfamily [Micromonas commoda] >gi|226514817|gb|ACO60813.1| H+-or Na+-translocating f-type, v-type and A-type ATPase superfamily [Micromonas commoda])

HSP 1 Score: 66.2402 bits (160), Expect = 7.924e-13
Identity = 31/63 (49.21%), Postives = 44/63 (69.84%), Query Frame = 0 
Query:    1 MSAAATT--YWRIAGLTYLQYTSKAAGVLRAALKEPLRTKTMAKEKIFFKRLEWSPKMIGQPV 61
            MSAAA +  YWRIAG++YL+Y+S  A V+R  LKEP  TK   +E ++FK ++W+    G+PV
Sbjct:    1 MSAAANSASYWRIAGMSYLKYSSMCAEVVRGCLKEPFLTKAKPREAVYFKSVKWTDGKPGKPV 63
[Close]
BLAST of EWM29021.1 vs. NCBI_GenBank
Match: gi|570948363|gb|ETP13620.1| (hypothetical protein F441_11318 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 65.855 bits (159), Expect = 1.236e-12
Identity = 30/72 (41.67%), Postives = 50/72 (69.44%), Query Frame = 0 
Query:    1 MSAAATTYWRIAGLTYLQYTSKAAGVLRAALKEPLRTKTMAKEKIFFKRLEWSPKMIGQPVGPLKVEVTSLK 72
            M++  T+ WR+AG++YLQY +K+AGVLRAALKEP+++   A+ K+ F   +W+    G+     +V++ S+K
Sbjct:    1 MASKGTSLWRMAGMSYLQYVNKSAGVLRAALKEPVKSTVEARSKVEFAGFKWANGERGE-----RVDIDSIK 67
[Close]
BLAST of EWM29021.1 vs. NCBI_GenBank
Match: gi|675197089|ref|XP_008907429.1| (hypothetical protein PPTG_13477 [Phytophthora parasitica INRA-310] >gi|568092244|gb|ETN07053.1| hypothetical protein PPTG_13477 [Phytophthora parasitica INRA-310] >gi|570324537|gb|ETO72485.1| hypothetical protein F444_11471 [Phytophthora parasitica P1976])

HSP 1 Score: 65.4698 bits (158), Expect = 1.349e-12
Identity = 30/72 (41.67%), Postives = 50/72 (69.44%), Query Frame = 0 
Query:    1 MSAAATTYWRIAGLTYLQYTSKAAGVLRAALKEPLRTKTMAKEKIFFKRLEWSPKMIGQPVGPLKVEVTSLK 72
            M++  T+ WR+AG++YLQY +K+AGVLRAALKEP+++   A+ K+ F   +W+    G+     +V++ S+K
Sbjct:    1 MASKGTSLWRMAGVSYLQYVNKSAGVLRAALKEPVKSTVEARSKVEFAGFKWANGDRGE-----RVDIDSIK 67
[Close]
BLAST of EWM29021.1 vs. NCBI_GenBank
Match: gi|566020898|gb|ETI43809.1| (hypothetical protein F443_11401 [Phytophthora parasitica P1569] >gi|567958282|gb|ETK83874.1| hypothetical protein L915_11091 [Phytophthora parasitica] >gi|567986974|gb|ETL37289.1| hypothetical protein L916_10989 [Phytophthora parasitica] >gi|568016252|gb|ETL90429.1| hypothetical protein L917_10898 [Phytophthora parasitica] >gi|568046628|gb|ETM43733.1| hypothetical protein L914_10924 [Phytophthora parasitica] >gi|570981209|gb|ETP41683.1| hypothetical protein F442_11286 [Phytophthora parasitica P10297])

HSP 1 Score: 65.4698 bits (158), Expect = 1.590e-12
Identity = 30/72 (41.67%), Postives = 50/72 (69.44%), Query Frame = 0 
Query:    1 MSAAATTYWRIAGLTYLQYTSKAAGVLRAALKEPLRTKTMAKEKIFFKRLEWSPKMIGQPVGPLKVEVTSLK 72
            M++  T+ WR+AG++YLQY +K+AGVLRAALKEP+++   A+ K+ F   +W+    G+     +V++ S+K
Sbjct:    1 MASKGTSLWRMAGVSYLQYVNKSAGVLRAALKEPVKSTVEARSKVEFAGFKWANGERGE-----RVDIDSIK 67
[Close]
BLAST of EWM29021.1 vs. NCBI_GenBank
Match: gi|695376318|ref|XP_009515755.1| (hypothetical protein PHYSODRAFT_284277 [Phytophthora sojae] >gi|348688666|gb|EGZ28480.1| hypothetical protein PHYSODRAFT_284277 [Phytophthora sojae])

HSP 1 Score: 64.3142 bits (155), Expect = 4.906e-12
Identity = 29/72 (40.28%), Postives = 49/72 (68.06%), Query Frame = 0 
Query:    1 MSAAATTYWRIAGLTYLQYTSKAAGVLRAALKEPLRTKTMAKEKIFFKRLEWSPKMIGQPVGPLKVEVTSLK 72
            M++  T+ WR+AG++YLQY +K+AGVLRAALKEP+++   A+  + F   +W+    G+     +V++ S+K
Sbjct:    1 MASKGTSLWRMAGVSYLQYVNKSAGVLRAALKEPVKSTVEARSNVEFAGFKWANGERGE-----RVDIDSIK 67
[Close]
BLAST of EWM29021.1 vs. NCBI_GenBank
Match: gi|298711732|emb|CBJ32778.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 63.929 bits (154), Expect = 5.542e-12
Identity = 34/68 (50.00%), Postives = 47/68 (69.12%), Query Frame = 0 
Query:    5 ATTYWRIAGLTYLQYTSKAAGVLRAALKEPLRTKTMAKEKIFFKRLEWSPKMIGQPVGPLKVEVTSLK 72
            ATT+WR+AG+TYL+Y SKA  V+R ALKEP R+  +A+E + + R  +   + GQP G  K+ V SLK
Sbjct:    4 ATTFWRLAGMTYLEYASKATTVMRGALKEPARSTALAREAVGYNRNVF---VGGQPQG--KLPVASLK 66
[Close]
BLAST of EWM29021.1 vs. NCBI_GenBank
Match: gi|1214712829|gb|OWZ23750.1| (H - or Na -translocating F-type, V-type and A-type ATPase (F-ATPase) [Phytophthora megakarya])

HSP 1 Score: 62.7734 bits (151), Expect = 1.707e-11
Identity = 28/72 (38.89%), Postives = 48/72 (66.67%), Query Frame = 0 
Query:    1 MSAAATTYWRIAGLTYLQYTSKAAGVLRAALKEPLRTKTMAKEKIFFKRLEWSPKMIGQPVGPLKVEVTSLK 72
            M++  T+ WR+AG++YLQY +++AGVLRAALKEP+++   A+  + F   +W+    G+     ++ V S+K
Sbjct:    1 MASKGTSLWRMAGVSYLQYANQSAGVLRAALKEPVKSTVQARSNVEFAGFKWANGERGE-----RINVDSIK 67
[Close]
BLAST of EWM29021.1 vs. NCBI_GenBank
Match: gi|147795098|emb|CAN67426.1| (hypothetical protein VITISV_025106 [Vitis vinifera])

HSP 1 Score: 61.2326 bits (147), Expect = 1.373e-10
Identity = 24/70 (34.29%), Postives = 42/70 (60.00%), Query Frame = 0 
Query:    2 SAAATTYWRIAGLTYLQYTSKAAGVLRAALKEPLRTKTMAKEKIFFKRLEWSPKMIGQPVGPLKVEVTSL 71
            S AA  +WR AG+TY+ Y++  A ++R  LKEP +++ + +EK+ F   +W   +  +P  PL + +  L
Sbjct:    7 SGAAVPFWRAAGMTYISYSNICANMVRNCLKEPFKSEALTREKVHFSISKWDNGVPQKPSNPLSLSIVDL 76
[Close]
BLAST of EWM29021.1 vs. NCBI_GenBank
Match: gi|1072223590|gb|OEU08345.1| (hypothetical protein FRACYDRAFT_271807 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 60.077 bits (144), Expect = 1.808e-10
Identity = 31/71 (43.66%), Postives = 48/71 (67.61%), Query Frame = 0 
Query:    1 MSAAATTYWRIAGLTYLQYTSKAAGVLRAALKEPLRTKTMAKEKIFFKRLEWSPKMIGQPVGPLKVEVTSL 71
            M+  AT +WRIAG++YLQY ++AAG +R+ALKEP+++K  A+ +  +K   W   + G  +   K E+TSL
Sbjct:    1 MTPPATNFWRIAGMSYLQYVNRAAGSVRSALKEPMKSKLSAQGEFSYKASAW---VDGTQMS--KTEITSL 66
The following BLAST results are available for this feature:
BLAST of EWM29021.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111536|gb|EWM29021.1|6.808e-44100.00atp synthase subunit epsilon [Nannochloropsis gadi... [more]
gi|255071761|ref|XP_002499555.1|7.924e-1349.21H+-or Na+-translocating f-type, v-type and A-type ... [more]
gi|570948363|gb|ETP13620.1|1.236e-1241.67hypothetical protein F441_11318 [Phytophthora para... [more]
gi|675197089|ref|XP_008907429.1|1.349e-1241.67hypothetical protein PPTG_13477 [Phytophthora para... [more]
gi|566020898|gb|ETI43809.1|1.590e-1241.67hypothetical protein F443_11401 [Phytophthora para... [more]
gi|695376318|ref|XP_009515755.1|4.906e-1240.28hypothetical protein PHYSODRAFT_284277 [Phytophtho... [more]
gi|298711732|emb|CBJ32778.1|5.542e-1250.00conserved unknown protein [Ectocarpus siliculosus][more]
gi|1214712829|gb|OWZ23750.1|1.707e-1138.89H - or Na -translocating F-type, V-type and A-type... [more]
gi|147795098|emb|CAN67426.1|1.373e-1034.29hypothetical protein VITISV_025106 [Vitis vinifera... [more]
gi|1072223590|gb|OEU08345.1|1.808e-1043.66hypothetical protein FRACYDRAFT_271807 [Fragilario... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1658rna1658Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications