rna1653, rna1653 (mRNA) Nannochloropsis gaditana

Overview
Namerna1653
Unique Namerna1653
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1472
Alignment locationCM002457.1:1174539..1174965 +

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Properties
Property NameValue
Productadp-ribosylation factor gtpase-activating protein agd14
Orig transcript idgnl|cribi|Naga_100071g23.7954.mrna
Orig protein idgnl|cribi|Naga_100071g23.7954
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1174539..1174965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100071g23gene1590Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1653rna1653-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29036.1cds1649Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1653 ID=rna1653|Name=rna1653|organism=Nannochloropsis gaditana|type=mRNA|length=1472bp
CGTTTTTGGTTTTATCTTTTGCCAGCACTCAAGCCGCCCGCCACACAACA
CTTTGGCAGGGCCTCATGCGTGCCACTGCGGCCACGGTAGTTAAAGCCGT
CGACGTTGCCCCTGGGGCGTACAACGGCGCCAATAGCGCTCATAAGGACA
AACCAGATGACCTTCTCTACGATCTGCATCACTTGGCCGCTGTGGACTCC
CACCCGGTGGATCTTGAAGGATTTCAGTCGGATCCCGAGAAATACTTGTG
GGAAAGCGCCACCTTTGGCGTGCAAGGAATCGTAAATCGCCTGTTTGAGC
TCCCATACGAGCAGTCCAACACAGGACCTGTCGTAACCCTCCCTGGTGCC
ACCACATACTTGCCTCGGGCGAAGCCCTTGCCGGAAGCGAGGCAAGCGAC
CCGGTGGGAGAAATTCGCCAAAGAGAAAGGCATTACCAAGAAGAAACGGT
CCCGGACGGTGTGGGACGAGGACGCTCAGGAATGGCGGCCTCGTTGGGGT
TACAAACGTGCCAAAAATGGCGTGGAGGACGCGGCGATCGTCGAAGTCAA
GCCCGGGGAGGATCCTAACGTGGATCCATGGACGCAGGCCCAGGAGGCGA
AGAGCGCCCGCGTGGCCAAGAACCTCCAGCAACAGGCAAAGAACAAAGGG
ATGGGACGTGGAACAAGTATCCTAGCCCCAGGCACAAAGCCGGGGAAACG
GGTGGGAAAAAGGGAGCGGGAAGCGATGGCGGCCGCCACTGCCGCGGGCC
CGCCTGCCCCTGTGTACGGATTACCAGTAGACCTGCCGGCGACAAAGAAG
CACGTGCAGGCACCTGGAGGACCTGGGGCTGCCTCGGAAGAGGGTGGAAA
GGCAGTGCCAAAGAAGAGAGGTAAAGTGGCAGGTCTCAAGGCGTTGGAGG
TGGCGCAGCAGTCCACGGCTTCGTTGGGGAAATTTGATGCAAAATTGGCA
GGAGAGCCCGAGAAGAAAGTGAAAAAAGTCCGGAAGGTGGCTCCCGTGGC
GGACAGCAAAAGCTTAGTGGAAGAGTCGAAACGCATGAATTCTGTGTTGT
CGACCGTCCTGCGACCCAAGGGAACGGGGCCTGGGACTGGAAAGTCGCAC
GTGAACATCGACGCGCTCGAGCCGGAAAGGGCGGGGTATTCGCGGAAGAA
GGGCCGCGGGGCGGTCAAGCGGAAGAAGTAAAATGGTGCTGTCTAGAAAT
ACGTCACGATAAAAACGCCAGCTGGAGAAGGACGATGGAGGGGACGCTGT
GTGGTGTAGGGGATGGGCAGGGGCAAGCGGGAGACGCTCCCTCGGACAGG
GCCTGGATGACGGCTTGTGTATCTCGAGGGGTTGAACGAGAATAATGAGA
TGCTGTGAAGGCGCCATGCAAGTGTATGGAGGCGGAAGTGCACATGCGGA
GACGGGGGGGGGGGATAAAACGATTGTTTGCCAAATTTGACGAAACATTC
AAATACGCGCAAGACGTGACGG
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protein sequence of rna1653

>rna1653-protein ID=rna1653-protein|Name=rna1653|organism=Nannochloropsis gaditana|type=polypeptide|length=62bp
MTGLDKRKEERLLRAVKDLSKLPGNKRCADCTEKLPQYVNLTFNTFICTA
CSGIHREFSHRL
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mRNA from alignment at CM002457.1:1174539..1174965+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1653 ID=rna1653|Name=rna1653|organism=Nannochloropsis gaditana|type=mRNA|length=427bp|location=Sequence derived from alignment at CM002457.1:1174539..1174965+ (Nannochloropsis gaditana)
ATGACCGGGCTGGACaaacgaaaggaggagcgcTTGCTTAGAGCAGTCAA
AGACTTGAGCAAACTTCCCGGAAACAAGCGGTGCGCTGATTGCACCGAAA
AGCTGCCTCAATATGTCAATCTTACATTTAATACCTTCATTTGCACCGGT
ACGGCCACTGAAATCTGCACGTATGGAAGATGGGATGTAGGACAGTTGTT
GTCCCTTTTAGTAAGCGCTTGTTTCGTGTGTTGCGACAGTGCACGAGGAA
GGCTTGTCGACCCTACGTCCAAGCACGAAATATTTCCCTGGTCTCATTCC
CACCCCCAAACGGCCCtgtttcccttttctcaaCATGCAGCATGCTCAGG
CATCCACCGCGAATTCTCGCACCGGGTCAAAagcatctccctctccacct
tttCCCTTGAGGAAGTCAAAGCTTTGA
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Coding sequence (CDS) from alignment at CM002457.1:1174539..1174965+

>rna1653 ID=rna1653|Name=rna1653|organism=Nannochloropsis gaditana|type=CDS|length=567bp|location=Sequence derived from alignment at CM002457.1:1174539..1174965+ (Nannochloropsis gaditana)
ATGACCGGGCTGGACaaacgaaaggaggagcgcTTGCTTAGAGCAGTCAA
AGACTTGAGCAAACTTCCCGGAAACAAGCGGTGCGCTGATTGCACCGAAA
AGCTGCCTCAATATGTCAATCTTACATTTAATACCTTCATTTGCACCGCA
TGCTCAGGCATCCACCGCGAATTCTCGCACCGGCTTTGAATGACCGGGCT
GGACaaacgaaaggaggagcgcTTGCTTAGAGCAGTCAAAGACTTGAGCA
AACTTCCCGGAAACAAGCGGTGCGCTGATTGCACCGAAAAGCTGCCTCAA
TATGTCAATCTTACATTTAATACCTTCATTTGCACCGCATGCTCAGGCAT
CCACCGCGAATTCTCGCACCGGCTTTGAATGACCGGGCTGGACaaacgaa
aggaggagcgcTTGCTTAGAGCAGTCAAAGACTTGAGCAAACTTCCCGGA
AACAAGCGGTGCGCTGATTGCACCGAAAAGCTGCCTCAATATGTCAATCT
TACATTTAATACCTTCATTTGCACCGCATGCTCAGGCATCCACCGCGAAT
TCTCGCACCGGCTTTGA
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Synonyms
Publications