EWM29036.1, cds1649 (CDS) Nannochloropsis gaditana

Overview
NameEWM29036.1
Unique Namecds1649
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1174539..1174686 +
Alignment locationCM002457.1:1174879..1174913 +
Alignment locationCM002457.1:1174960..1174965 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29036.1
Productadp-ribosylation factor gtpase-activating protein agd14
Orig transcript idgnl|cribi|Naga_100071g23.7954.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1174539..1174686 +
CM002457.1supercontigCM002457.1:1174879..1174913 +
CM002457.1supercontigCM002457.1:1174960..1174965 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0030234enzyme regulator activity
GO:0005488binding
GO:0005096GTPase activator activity
Vocabulary: INTERPRO
TermDefinition
IPR001164ArfGAP
Homology
[Close]
BLAST of EWM29036.1 vs. NCBI_GenBank
Match: gi|585111554|gb|EWM29036.1| (adp-ribosylation factor gtpase-activating protein agd14 [Nannochloropsis gaditana])

HSP 1 Score: 130.568 bits (327), Expect = 1.145e-38
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 
Query:    1 MTGLDKRKEERLLRAVKDLSKLPGNKRCADCTEKLPQYVNLTFNTFICTACSGIHREFSHRL 62
            MTGLDKRKEERLLRAVKDLSKLPGNKRCADCTEKLPQYVNLTFNTFICTACSGIHREFSHRL
Sbjct:    1 MTGLDKRKEERLLRAVKDLSKLPGNKRCADCTEKLPQYVNLTFNTFICTACSGIHREFSHRL 62
[Close]
BLAST of EWM29036.1 vs. NCBI_GenBank
Match: gi|675202167|ref|XP_008909968.1| (hypothetical protein, variant 7 [Phytophthora parasitica INRA-310] >gi|675202169|ref|XP_008909969.1| hypothetical protein, variant 8 [Phytophthora parasitica INRA-310] >gi|568089734|gb|ETN04574.1| hypothetical protein, variant 7 [Phytophthora parasitica INRA-310] >gi|568089735|gb|ETN04575.1| hypothetical protein, variant 8 [Phytophthora parasitica INRA-310])

HSP 1 Score: 91.2781 bits (225), Expect = 5.030e-20
Identity = 37/59 (62.71%), Postives = 48/59 (81.36%), Query Frame = 0 
Query:    5 DKRKEERLLRAVKDLSKL-PGNKRCADCTEKLPQYVNLTFNTFICTACSGIHREFSHRL 62
            +KR+EERL++ ++D  +  P NKRC DC E +PQYV L FNTF+CTACSGIHREF+HR+
Sbjct:    8 EKRQEERLIQELRDFQRSNPSNKRCFDCNEMMPQYVCLDFNTFVCTACSGIHREFAHRV 66
[Close]
BLAST of EWM29036.1 vs. NCBI_GenBank
Match: gi|566017277|gb|ETI40188.1| (hypothetical protein, variant 7 [Phytophthora parasitica P1569] >gi|566017278|gb|ETI40189.1| hypothetical protein, variant 8 [Phytophthora parasitica P1569] >gi|567954662|gb|ETK80295.1| hypothetical protein, variant 7 [Phytophthora parasitica] >gi|567954663|gb|ETK80296.1| hypothetical protein, variant 8 [Phytophthora parasitica] >gi|567983316|gb|ETL33712.1| hypothetical protein, variant 7 [Phytophthora parasitica] >gi|567983317|gb|ETL33713.1| hypothetical protein, variant 8 [Phytophthora parasitica] >gi|568012825|gb|ETL87002.1| hypothetical protein, variant 7 [Phytophthora parasitica] >gi|568012826|gb|ETL87003.1| hypothetical protein, variant 8 [Phytophthora parasitica] >gi|568042850|gb|ETM40165.1| hypothetical protein, variant 7 [Phytophthora parasitica] >gi|568042851|gb|ETM40166.1| hypothetical protein, variant 8 [Phytophthora parasitica] >gi|570320987|gb|ETO68935.1| hypothetical protein, variant 7 [Phytophthora parasitica P1976] >gi|570320988|gb|ETO68936.1| hypothetical protein, variant 8 [Phytophthora parasitica P1976] >gi|570944725|gb|ETP09982.1| hypothetical protein, variant 7 [Phytophthora parasitica CJ01A1] >gi|570944726|gb|ETP09983.1| hypothetical protein, variant 8 [Phytophthora parasitica CJ01A1] >gi|570976260|gb|ETP38103.1| hypothetical protein, variant 7 [Phytophthora parasitica P10297] >gi|570976261|gb|ETP38104.1| hypothetical protein, variant 8 [Phytophthora parasitica P10297])

HSP 1 Score: 91.2781 bits (225), Expect = 5.030e-20
Identity = 37/59 (62.71%), Postives = 48/59 (81.36%), Query Frame = 0 
Query:    5 DKRKEERLLRAVKDLSKL-PGNKRCADCTEKLPQYVNLTFNTFICTACSGIHREFSHRL 62
            +KR+EERL++ ++D  +  P NKRC DC E +PQYV L FNTF+CTACSGIHREF+HR+
Sbjct:    8 EKRQEERLIQELRDFQRSNPSNKRCFDCNEMMPQYVCLDFNTFVCTACSGIHREFAHRV 66
[Close]
BLAST of EWM29036.1 vs. NCBI_GenBank
Match: gi|675202163|ref|XP_008909966.1| (hypothetical protein, variant 5 [Phytophthora parasitica INRA-310] >gi|568089732|gb|ETN04572.1| hypothetical protein, variant 5 [Phytophthora parasitica INRA-310])

HSP 1 Score: 91.2781 bits (225), Expect = 5.088e-20
Identity = 37/59 (62.71%), Postives = 48/59 (81.36%), Query Frame = 0 
Query:    5 DKRKEERLLRAVKDLSKL-PGNKRCADCTEKLPQYVNLTFNTFICTACSGIHREFSHRL 62
            +KR+EERL++ ++D  +  P NKRC DC E +PQYV L FNTF+CTACSGIHREF+HR+
Sbjct:    8 EKRQEERLIQELRDFQRSNPSNKRCFDCNEMMPQYVCLDFNTFVCTACSGIHREFAHRV 66
[Close]
BLAST of EWM29036.1 vs. NCBI_GenBank
Match: gi|566017275|gb|ETI40186.1| (hypothetical protein, variant 5 [Phytophthora parasitica P1569] >gi|567954660|gb|ETK80293.1| hypothetical protein, variant 5 [Phytophthora parasitica] >gi|567983314|gb|ETL33710.1| hypothetical protein, variant 5 [Phytophthora parasitica] >gi|568012823|gb|ETL87000.1| hypothetical protein, variant 5 [Phytophthora parasitica] >gi|568042848|gb|ETM40163.1| hypothetical protein, variant 5 [Phytophthora parasitica] >gi|570320985|gb|ETO68933.1| hypothetical protein, variant 5 [Phytophthora parasitica P1976] >gi|570944723|gb|ETP09980.1| hypothetical protein, variant 5 [Phytophthora parasitica CJ01A1] >gi|570976258|gb|ETP38101.1| hypothetical protein, variant 5 [Phytophthora parasitica P10297])

HSP 1 Score: 91.2781 bits (225), Expect = 5.088e-20
Identity = 37/59 (62.71%), Postives = 48/59 (81.36%), Query Frame = 0 
Query:    5 DKRKEERLLRAVKDLSKL-PGNKRCADCTEKLPQYVNLTFNTFICTACSGIHREFSHRL 62
            +KR+EERL++ ++D  +  P NKRC DC E +PQYV L FNTF+CTACSGIHREF+HR+
Sbjct:    8 EKRQEERLIQELRDFQRSNPSNKRCFDCNEMMPQYVCLDFNTFVCTACSGIHREFAHRV 66
[Close]
BLAST of EWM29036.1 vs. NCBI_GenBank
Match: gi|675202155|ref|XP_008909962.1| (hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >gi|568089728|gb|ETN04568.1| hypothetical protein, variant 1 [Phytophthora parasitica INRA-310])

HSP 1 Score: 91.2781 bits (225), Expect = 5.101e-20
Identity = 37/59 (62.71%), Postives = 48/59 (81.36%), Query Frame = 0 
Query:    5 DKRKEERLLRAVKDLSKL-PGNKRCADCTEKLPQYVNLTFNTFICTACSGIHREFSHRL 62
            +KR+EERL++ ++D  +  P NKRC DC E +PQYV L FNTF+CTACSGIHREF+HR+
Sbjct:    8 EKRQEERLIQELRDFQRSNPSNKRCFDCNEMMPQYVCLDFNTFVCTACSGIHREFAHRV 66
[Close]
BLAST of EWM29036.1 vs. NCBI_GenBank
Match: gi|566017271|gb|ETI40182.1| (hypothetical protein, variant 1 [Phytophthora parasitica P1569] >gi|567954656|gb|ETK80289.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|567983310|gb|ETL33706.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568012819|gb|ETL86996.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568042844|gb|ETM40159.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|570320981|gb|ETO68929.1| hypothetical protein, variant 1 [Phytophthora parasitica P1976] >gi|570944719|gb|ETP09976.1| hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1] >gi|570976254|gb|ETP38097.1| hypothetical protein, variant 1 [Phytophthora parasitica P10297])

HSP 1 Score: 91.2781 bits (225), Expect = 5.101e-20
Identity = 37/59 (62.71%), Postives = 48/59 (81.36%), Query Frame = 0 
Query:    5 DKRKEERLLRAVKDLSKL-PGNKRCADCTEKLPQYVNLTFNTFICTACSGIHREFSHRL 62
            +KR+EERL++ ++D  +  P NKRC DC E +PQYV L FNTF+CTACSGIHREF+HR+
Sbjct:    8 EKRQEERLIQELRDFQRSNPSNKRCFDCNEMMPQYVCLDFNTFVCTACSGIHREFAHRV 66
[Close]
BLAST of EWM29036.1 vs. NCBI_GenBank
Match: gi|953492946|emb|CEG44892.1| (Predicted GTPase-activating protein [Plasmopara halstedii])

HSP 1 Score: 91.2781 bits (225), Expect = 5.460e-20
Identity = 36/59 (61.02%), Postives = 49/59 (83.05%), Query Frame = 0 
Query:    5 DKRKEERLLRAVKDLSK-LPGNKRCADCTEKLPQYVNLTFNTFICTACSGIHREFSHRL 62
            ++R+EERL++ ++D  + +P NKRC DC E +PQYV L FNTF+CTACSGIHREF+HR+
Sbjct:    8 EERQEERLIQDLRDFQRSIPANKRCFDCNEMMPQYVCLDFNTFVCTACSGIHREFAHRV 66
[Close]
BLAST of EWM29036.1 vs. NCBI_GenBank
Match: gi|675202153|ref|XP_008909961.1| (hypothetical protein PPTG_14423 [Phytophthora parasitica INRA-310] >gi|568089727|gb|ETN04567.1| hypothetical protein PPTG_14423 [Phytophthora parasitica INRA-310])

HSP 1 Score: 90.8929 bits (224), Expect = 6.144e-20
Identity = 37/59 (62.71%), Postives = 48/59 (81.36%), Query Frame = 0 
Query:    5 DKRKEERLLRAVKDLSKL-PGNKRCADCTEKLPQYVNLTFNTFICTACSGIHREFSHRL 62
            +KR+EERL++ ++D  +  P NKRC DC E +PQYV L FNTF+CTACSGIHREF+HR+
Sbjct:    8 EKRQEERLIQELRDFQRSNPSNKRCFDCNEMMPQYVCLDFNTFVCTACSGIHREFAHRV 66
[Close]
BLAST of EWM29036.1 vs. NCBI_GenBank
Match: gi|566017270|gb|ETI40181.1| (hypothetical protein F443_14354 [Phytophthora parasitica P1569] >gi|567954655|gb|ETK80288.1| hypothetical protein L915_13992 [Phytophthora parasitica] >gi|567983309|gb|ETL33705.1| hypothetical protein L916_13894 [Phytophthora parasitica] >gi|568012818|gb|ETL86995.1| hypothetical protein L917_13686 [Phytophthora parasitica] >gi|568042843|gb|ETM40158.1| hypothetical protein L914_13816 [Phytophthora parasitica] >gi|570320980|gb|ETO68928.1| hypothetical protein F444_14358 [Phytophthora parasitica P1976] >gi|570944718|gb|ETP09975.1| hypothetical protein F441_14234 [Phytophthora parasitica CJ01A1] >gi|570976253|gb|ETP38096.1| hypothetical protein F442_14198 [Phytophthora parasitica P10297])

HSP 1 Score: 90.5077 bits (223), Expect = 8.069e-20
Identity = 37/59 (62.71%), Postives = 48/59 (81.36%), Query Frame = 0 
Query:    5 DKRKEERLLRAVKDLSKL-PGNKRCADCTEKLPQYVNLTFNTFICTACSGIHREFSHRL 62
            +KR+EERL++ ++D  +  P NKRC DC E +PQYV L FNTF+CTACSGIHREF+HR+
Sbjct:    8 EKRQEERLIQELRDFQRSNPSNKRCFDCNEMMPQYVCLDFNTFVCTACSGIHREFAHRV 66
The following BLAST results are available for this feature:
BLAST of EWM29036.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111554|gb|EWM29036.1|1.145e-38100.00adp-ribosylation factor gtpase-activating protein ... [more]
gi|675202167|ref|XP_008909968.1|5.030e-2062.71hypothetical protein, variant 7 [Phytophthora para... [more]
gi|566017277|gb|ETI40188.1|5.030e-2062.71hypothetical protein, variant 7 [Phytophthora para... [more]
gi|675202163|ref|XP_008909966.1|5.088e-2062.71hypothetical protein, variant 5 [Phytophthora para... [more]
gi|566017275|gb|ETI40186.1|5.088e-2062.71hypothetical protein, variant 5 [Phytophthora para... [more]
gi|675202155|ref|XP_008909962.1|5.101e-2062.71hypothetical protein, variant 1 [Phytophthora para... [more]
gi|566017271|gb|ETI40182.1|5.101e-2062.71hypothetical protein, variant 1 [Phytophthora para... [more]
gi|953492946|emb|CEG44892.1|5.460e-2061.02Predicted GTPase-activating protein [Plasmopara ha... [more]
gi|675202153|ref|XP_008909961.1|6.144e-2062.71hypothetical protein PPTG_14423 [Phytophthora para... [more]
gi|566017270|gb|ETI40181.1|8.069e-2062.71hypothetical protein F443_14354 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1653rna1653Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications