rna1642, rna1642 (mRNA) Nannochloropsis gaditana

Overview
Namerna1642
Unique Namerna1642
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2065
Alignment locationCM002457.1:1140692..1142461 -

Link to JBrowse

Properties
Property NameValue
Productthiamin pyrophosphokinase 1
Orig transcript idgnl|cribi|Naga_100071g11.7945.mrna
Orig protein idgnl|cribi|Naga_100071g11.7945
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1140692..1142461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100071g11gene1579Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29027.1cds1638Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1642rna1642-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1642 ID=rna1642|Name=rna1642|organism=Nannochloropsis gaditana|type=mRNA|length=2065bp
TGCAGTTGCTCGCTGCATTTTTCTGGGCTGAATCCAAGCAAGGATCTGCT
CATTGTAATGTCTGTCGGTGTTCCAGCCAAGGGCCAACGTGGGGTCGATT
TGTTGCTTTGTCAACTCCTTTGTTACAATGGGCGTTTCTGACAATCACAG
ATGGTATGTACCGCCGCGGTAAAGCGTCTGGATACTGGTCTCGTCAAGGC
CCTCAAGGGTTCCCCGCTTCCAGGTCTGACTATCATTTTGGTTGACAAAG
AACAGCCTTCACCATTTTTTCGACATTACGGTGTAGCACATCTGGACCAG
ACACAGCTCGCACGCACGCGTCCTGTGAATGATGAGACAATTTTCCCAAT
CGGAGCAAGCTTGACGAAGAATTTCGTCGCGCTGCTTGTCGTCCAGCTTC
ATGTGAAAGGAAAATTGAGTCTTGATGATCCGATCACAACATATTTGCCC
AATTTGCGAATAAATCAACTGGAAAAGGGTGCGCCTCCAATTACTTTGCG
ACATCTCCTCTCCCACACCAGTGGAATCCGGGAGTACCGCAACCGCCATG
ACATATTGCGCATGATGAAGGAATTCGCACCGTGGCCCAAAATTGGAGTA
AAACGTCCCAGAAGCGAAGCAGCGGCGCTTCGGGACTACTACTGTGGACC
CGCAGCTCTGCCTGTCCAGGCGGTGGGAATTCCGGGAAGGCAACACATCA
AGAGCCACCACAACTACGGGCTCCTGGCCCTTGCTTGCGAGGAAGTGGCG
GCTGCCTGCGATGCGAATAGCTCCCGCCGATCGTCGAGGACGGGAATTCG
GTCGCTCCTCAGAGCGAACGTCTTCCAGCCCCTCCGCATGACGAGCACGG
ATCTCCAGGTGCCGGAGGGACACAGCAGGGACCTGACCACGTCTTTTCGA
TGGGCCAAGAAGGAAGGATTCTTGCCCATACCGGCGCATGGTGTCTTTGA
CCCGGGCCAAGGGCGTCCTTCCGGCGTGGGGGGGCTGTCCTATTCCAGCG
CCCAGGACATGGGCCGATATCTGCAGGCCTTGGTGGACCCCGCCCAATCC
GCGAACGGCGCGCTTTCCGAGACTATGCTGGACGAGCTCCTTCGTCCTTC
GTACCAAAAGGATGCATTTTTGCCCGCACAAGCCCTGAGTTTTGCAGTGG
AGGAGTCGTTCGATCCTGTGGACCGGGAGGTGGCCTACGTCACGTGCGGT
CAGGGAATGTCGTTCGCAGGATACCAGACCGCGTTAATCTTCTCTCGACA
CCGTGGGGTAGGGGCAGGGGTCTTGTGCAATGCTGGAAGCGATTCCTACG
AGCTCTCCCGGGTGGCAGCCATGGCGTTCCAGGAGGTTTCGCGGCAGGCC
TCGGACGCCAGGGCGGGTTCTGTATGGTGCGAGACGCGAGGGGATGGAGC
TGGGAAGGAACTTCCACAAGAGGGCTCGAGTCGTACGGAGCAGCGTAAGA
GAGAATTTGGCGTGACTGATCAGCAGGAGGACGTGCCTGTCGTGGCGCAA
CCTATATCGACCCGAGAGGAACCTGCACCGTGCCAGCTTCGCTCGAGCTC
GCACGCCCGGCCCTGGAGACAGGCATTTGGAATGCGGGCTCCGGGCTTCG
AGGCGGCGGTCCTGTGGCCGCAGGTGGTCGGGGTCTACCAACTCCCCTGG
AAAGAATTCTCAGCCCGGGTTATGTGGACCTTGGGCGGCGAAGTTCAAGT
GTACGTGGAAGACTCCCGGCTGCGGATGCGCGCCCTCTGGGGCCCTCTCC
GTACCCGTCTATTCAACAAGGAGAAAGGCTTGGTCCTGTTGCCCGCGCAA
GACGGACACCCTTTGCATTTCTCGGTGGAGGGAGCCGGGCGGCAGGTCTT
GAGCACACCTGTGCGGGGAGGGACGGACATTGCTTTCGACGTGACGACCG
GGGGGATGACGTTGGGGATGGTGACGTTGCAGAGAACGCGCTGGTATTTC
AGCCTGCGAGTGTGGGCTATGGGCTTTTTGGCCATGGAAAGCTTGCGATT
GATAGGACGTGGGAAATTTGTCGAGATCATGACGTCGCTCTTGTTATGGG
GATGAGCAAAAGAAG
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protein sequence of rna1642

>rna1642-protein ID=rna1642-protein|Name=rna1642|organism=Nannochloropsis gaditana|type=polypeptide|length=361bp
MSYHGGNRKRKFGVSSRSRSKSDGSVRHKNAFPAALSPLPKYRWDNSVDF
GEHDVDSAEPVTAAGRQTNNKGWRGQQGDDPNGSAVINALIILNTDCVGG
SLFRRFWAHSTLRVCADGGGNRLYDSLGKMEREDFVPMAINGDLDSLREE
VADWYRARGSQVVKNADQDSNDLEKCLEFLKGQEAANKGPGSSGGKDGVG
LRPWERKQVATRQSSRLNVFVLGALGQRFDHTMANCHILYRYSKVFRRLV
LLGEESLAFLLPAGRHWIVPDARTENPVCGLIPMGQPCTSIRTRGLRWEL
RGEAMAMGSLVSTSNERVMVDGGGEGEGGEEGREGERGVWIENSDPVIWT
SGLKKEWQKGS
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mRNA from alignment at CM002457.1:1140692..1142461-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1642 ID=rna1642|Name=rna1642|organism=Nannochloropsis gaditana|type=mRNA|length=1770bp|location=Sequence derived from alignment at CM002457.1:1140692..1142461- (Nannochloropsis gaditana)
GAGAAGGAGACGCCGCAACCCCTCGGGCGCTTCTCACGCACTAATCCGCT
TACCTTTTAGTCACAGTCCTTTCTCAAACCGCGTGGTATTCCTGCGCGTT
GTATCAAAGGCTCTGTTTTGCCTTGGCTGCATTCGCATCACCATCCTCTC
GGCTTAGCGCCTGCACTCTTACCCGTTGCCCCGGAATCCTCGCGTGGTAC
CTGCAAGAAACTACTTGCCGTACAACACCACCACTTCAACTCACCCCCTG
CTGGTCGAGGATACCAGGCCGCTCGCACAAGTTCACACAAATATCCTCAC
GCTTTTTTTCATACGTCAGCCAACAGCCGCAGCGTGTTGCGTCCGTGTGA
AAGCTGCCGCCGCCCCGCTCCACCGTATCCTCTACGAATCGCCCCTTTCC
TTCCTCGCGTTGCCCGCGCGTCTTCCACTTTCTCCTCTCCACCTTTTTCA
TCAGGCACCACATCACCAGAGTCGTCGCCGCTGCGGCGTCGCCTTCAGTG
GTAGCGGCCGCGTTGCCAAAAGCTTCTCGCAGGTCCACGTTTGTCCTCCC
CGTGTCACAGGCGCTTGCCTCAGTGCGCACGGAAACGCCTTCGCGGGAAT
TGCGCAGCCCTTTTACAATGAGCTACCACGGAGGCAACAGAAAAAGGAAG
TTTGGTGTCAGCAGCAGGAGCAGGAGTAAAAGCGACGGAAGCGTACGACA
CAAAAATGCATTCCCTGCCGCGCTCTCACCACTTCCCAAGTACCGCTGGG
ACAACAGCGTGGATTTCGGGGAGCATGATGTAGACAGCGCGGAGCCCGTC
ACGGCAGCTGGGCGACAGACGAATAACAAGGGGTGGCGCGGGCAACAAGG
AGACGATCCTAACGGAAGTGCGGTGATTAATGCGCTAATTATCCTCAACA
CTGATTGTGTGGGTGGAAGCCTGTTTCGCAGGTTCTGGGCGCATTCTACC
CTGCGGGTATGTGCGGACGGTGGAGGAAACAGGCTTTATGATAGCCTTGG
CAAGATGGAGAGGGAAGATTTCGTACCCATGGCTATAAACGGTGATCTGG
ACTCTCTGCGTGAGGAGGTAGCGGACTGGTACCGGGCCCGAGGCTCCCAG
GTCGTGAAAAACGCGGACCAAGACAGCAACGACCTGGAGAAGTGCTTGGA
GTTTCTGAAGGGGCAAGAGGCGGCGAACAAGGGTCCTGGGTCGAGCGGGG
GAAAGGATGGGGTGGGATTGCGGCCGTGGGAGAGGAAGCAGGTGGCGACG
CGGCAAAGCAGTCGCCTGAACGTCTTTGTGCTCGGCGCCCTGGGCCAACG
ATTCGACCACACCATGGCAAATTGCCACATCCTGTACAGGTATTCGAAGG
TGTTTCGGCGCCTGGTTTTGCTGGGGGAGGAAAGCCTCGCCTTCCTCTTG
CCGGCGGGGAGGCATTGGATCGTCCCGGACGCGAGGACAGAGAATCCTGT
CTGTGGCTTGATTCCCATGGGGCAACCGTGCACGTCCATCCGTACTCGAG
GGCTCCGGTGGGAGTTGCGTGGGGAGGCCATGGCGATGGGCAGTTTGGTC
AGCACCTCGAACGAACGCGTGATGGTGGATGGGGGGGGAGAGGGGGAAGG
CGGGGAGGAGGGGAGGGAAGGAGAGAGAGGGGTGTGGATTGAAAATTCCG
ATCCGGTCATTTGGACCTCGGGCCTCAAAAAGGAATGGCAGAAAGGAAGT
TAAAGCGCCTGGTGGAGGATGAGTAGGACCATGTATATAAAGCAATGAAG
CAGAGTCGGAGGCCGGACTA
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Coding sequence (CDS) from alignment at CM002457.1:1140692..1142461-

>rna1642 ID=rna1642|Name=rna1642|organism=Nannochloropsis gaditana|type=CDS|length=1086bp|location=Sequence derived from alignment at CM002457.1:1140692..1142461- (Nannochloropsis gaditana)
ATGAGCTACCACGGAGGCAACAGAAAAAGGAAGTTTGGTGTCAGCAGCAG
GAGCAGGAGTAAAAGCGACGGAAGCGTACGACACAAAAATGCATTCCCTG
CCGCGCTCTCACCACTTCCCAAGTACCGCTGGGACAACAGCGTGGATTTC
GGGGAGCATGATGTAGACAGCGCGGAGCCCGTCACGGCAGCTGGGCGACA
GACGAATAACAAGGGGTGGCGCGGGCAACAAGGAGACGATCCTAACGGAA
GTGCGGTGATTAATGCGCTAATTATCCTCAACACTGATTGTGTGGGTGGA
AGCCTGTTTCGCAGGTTCTGGGCGCATTCTACCCTGCGGGTATGTGCGGA
CGGTGGAGGAAACAGGCTTTATGATAGCCTTGGCAAGATGGAGAGGGAAG
ATTTCGTACCCATGGCTATAAACGGTGATCTGGACTCTCTGCGTGAGGAG
GTAGCGGACTGGTACCGGGCCCGAGGCTCCCAGGTCGTGAAAAACGCGGA
CCAAGACAGCAACGACCTGGAGAAGTGCTTGGAGTTTCTGAAGGGGCAAG
AGGCGGCGAACAAGGGTCCTGGGTCGAGCGGGGGAAAGGATGGGGTGGGA
TTGCGGCCGTGGGAGAGGAAGCAGGTGGCGACGCGGCAAAGCAGTCGCCT
GAACGTCTTTGTGCTCGGCGCCCTGGGCCAACGATTCGACCACACCATGG
CAAATTGCCACATCCTGTACAGGTATTCGAAGGTGTTTCGGCGCCTGGTT
TTGCTGGGGGAGGAAAGCCTCGCCTTCCTCTTGCCGGCGGGGAGGCATTG
GATCGTCCCGGACGCGAGGACAGAGAATCCTGTCTGTGGCTTGATTCCCA
TGGGGCAACCGTGCACGTCCATCCGTACTCGAGGGCTCCGGTGGGAGTTG
CGTGGGGAGGCCATGGCGATGGGCAGTTTGGTCAGCACCTCGAACGAACG
CGTGATGGTGGATGGGGGGGGAGAGGGGGAAGGCGGGGAGGAGGGGAGGG
AAGGAGAGAGAGGGGTGTGGATTGAAAATTCCGATCCGGTCATTTGGACC
TCGGGCCTCAAAAAGGAATGGCAGAAAGGAAGTTAA
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Synonyms
Publications