EWM29027.1, cds1638 (CDS) Nannochloropsis gaditana

Overview
NameEWM29027.1
Unique Namecds1638
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1140759..1141844 -

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Properties
Property NameValue
Protein idEWM29027.1
Productthiamin pyrophosphokinase 1
Orig transcript idgnl|cribi|Naga_100071g11.7945.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1140759..1141844 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0004788thiamine diphosphokinase activity
GO:0030975thiamine binding
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0006772thiamine metabolic process
GO:0009229thiamine diphosphate biosynthetic process
Vocabulary: INTERPRO
TermDefinition
IPR007371TPK_catalytic
IPR006282Thi_PPkinase
IPR007373Thiamin_PyroPKinase_B1-bd
Homology
BLAST of EWM29027.1 vs. NCBI_GenBank
Match: gi|585111545|gb|EWM29027.1| (thiamin pyrophosphokinase 1 [Nannochloropsis gaditana])

HSP 1 Score: 740.339 bits (1910), Expect = 0.000e+0
Identity = 361/361 (100.00%), Postives = 361/361 (100.00%), Query Frame = 0
Query:    1 MSYHGGNRKRKFGVSSRSRSKSDGSVRHKNAFPAALSPLPKYRWDNSVDFGEHDVDSAEPVTAAGRQTNNKGWRGQQGDDPNGSAVINALIILNTDCVGGSLFRRFWAHSTLRVCADGGGNRLYDSLGKMEREDFVPMAINGDLDSLREEVADWYRARGSQVVKNADQDSNDLEKCLEFLKGQEAANKGPGSSGGKDGVGLRPWERKQVATRQSSRLNVFVLGALGQRFDHTMANCHILYRYSKVFRRLVLLGEESLAFLLPAGRHWIVPDARTENPVCGLIPMGQPCTSIRTRGLRWELRGEAMAMGSLVSTSNERVMVDGGGEGEGGEEGREGERGVWIENSDPVIWTSGLKKEWQKGS 361
            MSYHGGNRKRKFGVSSRSRSKSDGSVRHKNAFPAALSPLPKYRWDNSVDFGEHDVDSAEPVTAAGRQTNNKGWRGQQGDDPNGSAVINALIILNTDCVGGSLFRRFWAHSTLRVCADGGGNRLYDSLGKMEREDFVPMAINGDLDSLREEVADWYRARGSQVVKNADQDSNDLEKCLEFLKGQEAANKGPGSSGGKDGVGLRPWERKQVATRQSSRLNVFVLGALGQRFDHTMANCHILYRYSKVFRRLVLLGEESLAFLLPAGRHWIVPDARTENPVCGLIPMGQPCTSIRTRGLRWELRGEAMAMGSLVSTSNERVMVDGGGEGEGGEEGREGERGVWIENSDPVIWTSGLKKEWQKGS
Sbjct:    1 MSYHGGNRKRKFGVSSRSRSKSDGSVRHKNAFPAALSPLPKYRWDNSVDFGEHDVDSAEPVTAAGRQTNNKGWRGQQGDDPNGSAVINALIILNTDCVGGSLFRRFWAHSTLRVCADGGGNRLYDSLGKMEREDFVPMAINGDLDSLREEVADWYRARGSQVVKNADQDSNDLEKCLEFLKGQEAANKGPGSSGGKDGVGLRPWERKQVATRQSSRLNVFVLGALGQRFDHTMANCHILYRYSKVFRRLVLLGEESLAFLLPAGRHWIVPDARTENPVCGLIPMGQPCTSIRTRGLRWELRGEAMAMGSLVSTSNERVMVDGGGEGEGGEEGREGERGVWIENSDPVIWTSGLKKEWQKGS 361          
BLAST of EWM29027.1 vs. NCBI_GenBank
Match: gi|669162004|ref|XP_008616564.1| (thiamine pyrophosphokinase [Saprolegnia diclina VS20] >gi|530731755|gb|EQC29997.1| thiamine pyrophosphokinase [Saprolegnia diclina VS20])

HSP 1 Score: 177.948 bits (450), Expect = 4.701e-50
Identity = 98/270 (36.30%), Postives = 150/270 (55.56%), Query Frame = 0
Query:   89 ALIILN-TDCVGGSLFRRFWAHSTLRVCADGGGNRLYDSL-GKMEREDFVPMAINGDLDSLREEVADWYRARGSQVVKNADQDSNDLEKCLEFLKGQEAANKGPGSSGGKDGVGLRPWERKQVATRQSSRLNVFVLGALGQRFDHTMANCHILYRYSKVFRRLVLLGEESLAFLLPAGRHWIVPDARTENPVCGLIPMGQPCTSIRTRGLRWELRGEAMAMGSLVSTSNERVMVDGGGEGEGGEEGREGERGVWIENSDPVIWTSGLKKE 356
            AL+ILN T  V G  F   W  +T+ +CADGG N+LYD+     + E ++P  + GDLDSLR +V+ ++ ARG+ ++K+ DQD+NDL+KCL  L+  +A+   PG   G D   L+              L V +LGA+G RFD  + N   LYR+S VF  + L  + +   LL  G+H I P+   E+  CGLIP+G  C ++ T+GL+W++     A+   VS+SN  +  +                 + +ENSDP+IWT+ ++ +
Sbjct:   29 ALVILNGTGLVKG--FEALWPRATVTICADGGANKLYDTWRAAGKDEPWIPQYVKGDLDSLRPDVSAFFEARGTVIMKDPDQDTNDLDKCLALLESLQASM--PGKEDGNDASALK--------------LKVLMLGAMGGRFDQEIQNISALYRWSHVFESMTLFSDHTSVMLLSPGKHCIRPNFDIESRTCGLIPLGGTCKALTTQGLKWDMTDFETAVSGFVSSSNHCLADE-----------------IIVENSDPLIWTTEIRSD 263          
BLAST of EWM29027.1 vs. NCBI_GenBank
Match: gi|698777879|ref|XP_009821983.1| (thiamine pyrophosphokinase, partial [Aphanomyces astaci] >gi|574124108|gb|ETV89583.1| thiamine pyrophosphokinase, partial [Aphanomyces astaci])

HSP 1 Score: 177.178 bits (448), Expect = 9.258e-50
Identity = 100/269 (37.17%), Postives = 149/269 (55.39%), Query Frame = 0
Query:   89 ALIILNTDCVG-GSLFRRFWAHSTLRVCADGGGNRLYDSLGK---MEREDFVPMAINGDLDSLREEVADWYRARGSQVVKNADQDSNDLEKCLEFLKGQEAANKGPGSSGGKDGVGLRPWERKQVATRQSSRLNVFVLGALGQRFDHTMANCHILYRYSKVFRRLVLLGEESLAFLLPAGRHWIVPDARTENPVCGLIPMGQPCTSIRTRGLRWELRGEAMAMGSLVSTSNERVMVDGGGEGEGGEEGREGERGVWIENSDPVIWTSGL 353
            ALI++N   +G  S F   W  +   VCADGG N+LYD + +   +  ++++P  I GDLDS+R EVA ++  +G+QV+K+ DQ+SNDL+KCL  L+  +   +   ++G  D V                +LNV V+GA+G RFD  M N + L+++S +F R+ L+ + + A LL  G H I P+   E   CGLIP+G  C  + T+GL+W L   + A G LVSTSN  +  D                 V ++ SDP+IWT+ L
Sbjct:   36 ALIVING--IGLISCFDHLWEKARFTVCADGGANKLYDYIKRDKVVPPKNYIPQYIKGDLDSIRPEVASYFELQGTQVIKDPDQNSNDLDKCLSLLRTLQ---RDLNANGHGDAV----------------KLNVLVVGAMGGRFDQEMQNVNALFQWSSIFHRMTLVSDSTSATLLVPGTHCIRPNFAVEGRTCGLIPVGGSCEILTTKGLKWNLTNHSTAFGGLVSTSNHVLDCD-----------------VHVDTSDPLIWTTEL 266          
BLAST of EWM29027.1 vs. NCBI_GenBank
Match: gi|813178332|ref|XP_012205635.1| (thiamine pyrophosphokinase [Saprolegnia parasitica CBS 223.65] >gi|641529481|gb|KDO23652.1| thiamine pyrophosphokinase [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 175.252 bits (443), Expect = 3.963e-49
Identity = 96/270 (35.56%), Postives = 151/270 (55.93%), Query Frame = 0
Query:   89 ALIILN-TDCVGGSLFRRFWAHSTLRVCADGGGNRLYDSL-GKMEREDFVPMAINGDLDSLREEVADWYRARGSQVVKNADQDSNDLEKCLEFLKGQEAANKGPGSSGGKDGVGLRPWERKQVATRQSSRLNVFVLGALGQRFDHTMANCHILYRYSKVFRRLVLLGEESLAFLLPAGRHWIVPDARTENPVCGLIPMGQPCTSIRTRGLRWELRGEAMAMGSLVSTSNERVMVDGGGEGEGGEEGREGERGVWIENSDPVIWTSGLKKE 356
            AL+ILN T  V G  F   W  +T+ +CADGG N+LYD+     + E ++P  + GDLDSLR +V+ ++ ARG+ ++K+ DQD+NDL+KCL  L+  +A+   P +  G                  +++L V +LGA+G RFD  + N   LYR+S VF  + L  + +   LLP G+H I P+   E+  CGLIP+   C ++ T+GL+W++     A+   VS+SN  +           +E       + +ENSDP+IWT+ ++ +
Sbjct:   29 ALVILNGTGLVKG--FEALWPRATITICADGGANKLYDTWRASGKDEPWIPQYVKGDLDSLRPDVSAFFEARGTVIIKDPDQDTNDLDKCLALLESLQASM--PSNDDGD---------------ASAAKLKVLMLGAMGGRFDQEIQNISALYRWSHVFESMTLFSDHTSVMLLPPGKHCIRPNFDIESRTCGLIPLSGTCKALTTQGLKWDMTDFETAISGFVSSSNHCL----------ADE-------IIVENSDPLIWTTEIRPD 262          
BLAST of EWM29027.1 vs. NCBI_GenBank
Match: gi|325190318|emb|CCA24794.1| (thiamin pyrophosphokinase putative [Albugo laibachii Nc14])

HSP 1 Score: 175.252 bits (443), Expect = 6.155e-49
Identity = 94/254 (37.01%), Postives = 138/254 (54.33%), Query Frame = 0
Query:  102 LFRRFWAHSTLRVCADGGGNRLYDSLGKMERED-FVPMAINGDLDSLREEVADWYRARGSQVVKNADQDSNDLEKCLEFLKGQEAANKGPGSSGGKDGVGLRPWERKQVATRQSSRLNVFVLGALGQRFDHTMANCHILYRYSKVFRRLVLLGEESLAFLLPAGRHWIVPDARTENPVCGLIPMGQPCTSIRTRGLRWELRGEAMAMGSLVSTSNERVMVDGGGEGEGGEEGREGERGVWIENSDPVIWTSGLK 354
            +F   W+++ + +CADGG N LYD   ++E E  F+P  I GDLDSLR +V  +Y  +G++++++ DQDSNDL+KCL  L                       +E++Q  T+ + R  VF+ G +G RFD  M N + L+RY   F+ + L+ E + A LL  G H I P+   E  VCG+IP+G  C  + T GL+W+L  ++   G LVSTSN                    ++ V I NSDPVIWT+ L+
Sbjct:   50 IFCHMWSNAQVTICADGGANCLYDRAVRVEAESTFIPKYIKGDLDSLRPDVQSYYEQQGTEIIQDLDQDSNDLDKCLNLL-----------------------YEKQQ--TKSAKRYAVFIFGGMGGRFDQEMQNINCLFRYHSKFQEMCLISEATTARLLLGGSHEIEPNLEFETGVCGIIPLGGMCRKLTTEGLQWDLNEQSSRFGELVSTSN-----------------FIKQKRVLIRNSDPVIWTTELR 261          
BLAST of EWM29027.1 vs. NCBI_GenBank
Match: gi|635370764|emb|CCI41027.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 174.096 bits (440), Expect = 1.486e-48
Identity = 96/253 (37.94%), Postives = 134/253 (52.96%), Query Frame = 0
Query:  102 LFRRFWAHSTLRVCADGGGNRLYDSLGKMERED-FVPMAINGDLDSLREEVADWYRARGSQVVKNADQDSNDLEKCLEFLKGQEAANKGPGSSGGKDGVGLRPWERKQVATRQSSRLNVFVLGALGQRFDHTMANCHILYRYSKVFRRLVLLGEESLAFLLPAGRHWIVPDARTENPVCGLIPMGQPCTSIRTRGLRWELRGEAMAMGSLVSTSNERVMVDGGGEGEGGEEGREGERGVWIENSDPVIWTSGL 353
            LF   W+ + + +CADGG N LYD   K+E E  F+P  I GDLDSLR  V  +Y  RGS+++++ DQDSNDL+KCL  L                       W++++  +  S   +V + G +G RFD  M N + L+RY   F+ + L+ E + A LL AG H I P+   E  VCG+IP+G PC  + T GL+W++       G +VSTSN                    E+ V I+NSDPVIWT+ L
Sbjct:   53 LFCHLWSSAHVTICADGGANCLYDEATKVEAESIFLPKYIKGDLDSLRPAVRAFYEQRGSEIIQDLDQDSNDLDKCLNLL-----------------------WDKQEEIS--SGMFSVVIFGGMGGRFDQEMQNINCLFRYQSKFQEICLVSESTTARLLVAGSHEIEPNLEYETGVCGIIPLGGPCRKLTTEGLQWDVTDRYSGFGEMVSTSN-----------------LIKEKRVLIQNSDPVIWTTEL 263          
BLAST of EWM29027.1 vs. NCBI_GenBank
Match: gi|1173949202|gb|OQR97270.1| (thiamin pyrophosphokinase [Achlya hypogyna])

HSP 1 Score: 172.17 bits (435), Expect = 4.942e-48
Identity = 98/267 (36.70%), Postives = 143/267 (53.56%), Query Frame = 0
Query:   89 ALIILN-TDCVGGSLFRRFWAHSTLRVCADGGGNRLYDSLGKMEREDFVPMAINGDLDSLREEVADWYRARGSQVVKNADQDSNDLEKCLEFLKGQEAANKGPGSSGGKDGVGLRPWERKQVATRQSSRLNVFVLGALGQRFDHTMANCHILYRYSKVFRRLVLLGEESLAFLLPAGRHWIVPDARTENPVCGLIPMGQPCTSIRTRGLRWELRGEAMAMGSLVSTSNERVMVDGGGEGEGGEEGREGERGVWIENSDPVIWTSGLK 354
            AL+I+N    V G  F   W  +T+ +CADGG N+L+D    + +  FVP  + GDLDSLR EVAD++ ++G+ +VK+ DQ+SNDL+KCL  L+  +        S   D +                +L V VLGA+G RFD  + N + LYR+S VF  + L  + + A LL  G H I P+   E   CGLIP+G  C S+ T+GL+W++      +G  VSTSN  +                    + +ENSDP++WT+ L+
Sbjct:   28 ALVIVNGVGFVPG--FAALWPRATVTICADGGANKLHD----VWKAKFVPQYVKGDLDSLRPEVADYFESKGTVIVKDPDQESNDLDKCLHLLQTLQ--------SSMADNI----------------KLKVLVLGAMGGRFDQEIQNINALYRWSSVFESMTLFSDHTSATLLLPGTHLIRPNFDVETRTCGLIPLGGVCKSVTTKGLKWDMTDFETTIGGFVSTSNHCL-----------------SDEITVENSDPLVWTTELQ 247          
BLAST of EWM29027.1 vs. NCBI_GenBank
Match: gi|635117058|ref|XP_007981521.1| (PREDICTED: thiamin pyrophosphokinase 1 isoform X2 [Chlorocebus sabaeus] >gi|635117060|ref|XP_007981522.1| PREDICTED: thiamin pyrophosphokinase 1 isoform X2 [Chlorocebus sabaeus])

HSP 1 Score: 168.703 bits (426), Expect = 7.290e-47
Identity = 96/267 (35.96%), Postives = 138/267 (51.69%), Query Frame = 0
Query:   89 ALIILNTDCVGGSLFRRFWAHSTLRVCADGGGNRLYDSLGKMEREDFVPMAINGDLDSLREEVADWYRARGSQVVKNADQDSNDLEKCLEFLKGQEAANKGPGSSGGKDGVGLRPWERKQVATRQSSRLNVFVLGALGQRFDHTMANCHILYRYSKVFR-RLVLLGEESLAFLLPAGRHWIVPDARTENPVCGLIPMGQPCTSIRTRGLRWELRGEAMAMGSLVSTSNERVMVDGGGEGEGGEEGREGERGVWIENSDPVIWTSGLK 354
             L+ILN      + FR  W  + LR CADGG NRLYD + + ERE F+P  INGD DS+R EV ++Y  +G +++   DQD  D  KCL+ L+                         K++  +      +  LG L  RFD  MA+ + L+R + +    ++++ EESL +LL  G+H +  D   E   CGLIP+GQPCT + T GL+W L+ + +A G+LVSTSN     DG G              V +E   P++WT  +K
Sbjct:   20 CLVILNQPL--DNYFRHLWNKALLRACADGGANRLYD-ITEGERESFLPEFINGDFDSIRPEVREYYATKGCELISTPDQDHTDFTKCLKVLQ-------------------------KKIEEKDLKVDVIVTLGGLAGRFDQIMASVNTLFRATHITPFPIIIIQEESLIYLLQPGKHRLHVDTGMEGKWCGLIPVGQPCTQVTTTGLKWNLKNDVLAFGTLVSTSNTY---DGSGV-------------VTVETDHPLLWTMAIK 242          
BLAST of EWM29027.1 vs. NCBI_GenBank
Match: gi|635117054|ref|XP_007981519.1| (PREDICTED: thiamin pyrophosphokinase 1 isoform X1 [Chlorocebus sabaeus] >gi|635117056|ref|XP_007981520.1| PREDICTED: thiamin pyrophosphokinase 1 isoform X1 [Chlorocebus sabaeus])

HSP 1 Score: 169.088 bits (427), Expect = 1.061e-46
Identity = 97/277 (35.02%), Postives = 141/277 (50.90%), Query Frame = 0
Query:   79 DDPNGSAVINALIILNTDCVGGSLFRRFWAHSTLRVCADGGGNRLYDSLGKMEREDFVPMAINGDLDSLREEVADWYRARGSQVVKNADQDSNDLEKCLEFLKGQEAANKGPGSSGGKDGVGLRPWERKQVATRQSSRLNVFVLGALGQRFDHTMANCHILYRYSKVFR-RLVLLGEESLAFLLPAGRHWIVPDARTENPVCGLIPMGQPCTSIRTRGLRWELRGEAMAMGSLVSTSNERVMVDGGGEGEGGEEGREGERGVWIENSDPVIWTSGLK 354
            + P    +   L+ILN      + FR  W  + LR CADGG NRLYD + + ERE F+P  INGD DS+R EV ++Y  +G +++   DQD  D  KCL+ L+                         K++  +      +  LG L  RFD  MA+ + L+R + +    ++++ EESL +LL  G+H +  D   E   CGLIP+GQPCT + T GL+W L+ + +A G+LVSTSN     DG G              V +E   P++WT  +K
Sbjct:   31 ESPKSGNLKYCLVILNQPL--DNYFRHLWNKALLRACADGGANRLYD-ITEGERESFLPEFINGDFDSIRPEVREYYATKGCELISTPDQDHTDFTKCLKVLQ-------------------------KKIEEKDLKVDVIVTLGGLAGRFDQIMASVNTLFRATHITPFPIIIIQEESLIYLLQPGKHRLHVDTGMEGKWCGLIPVGQPCTQVTTTGLKWNLKNDVLAFGTLVSTSNTY---DGSGV-------------VTVETDHPLLWTMAIK 263          
BLAST of EWM29027.1 vs. NCBI_GenBank
Match: gi|544423481|ref|XP_005551131.1| (PREDICTED: thiamin pyrophosphokinase 1 [Macaca fascicularis] >gi|982242006|ref|XP_015303701.1| PREDICTED: thiamin pyrophosphokinase 1 [Macaca fascicularis])

HSP 1 Score: 167.933 bits (424), Expect = 1.770e-46
Identity = 96/267 (35.96%), Postives = 138/267 (51.69%), Query Frame = 0
Query:   89 ALIILNTDCVGGSLFRRFWAHSTLRVCADGGGNRLYDSLGKMEREDFVPMAINGDLDSLREEVADWYRARGSQVVKNADQDSNDLEKCLEFLKGQEAANKGPGSSGGKDGVGLRPWERKQVATRQSSRLNVFVLGALGQRFDHTMANCHILYRYSKVFR-RLVLLGEESLAFLLPAGRHWIVPDARTENPVCGLIPMGQPCTSIRTRGLRWELRGEAMAMGSLVSTSNERVMVDGGGEGEGGEEGREGERGVWIENSDPVIWTSGLK 354
             L+ILN      + FR  W  + LR CADGG NRLYD + + ERE F+P  INGD DS+R EV ++Y  +G +++   DQD  D  KCL+ L+                         K++  +      +  LG L  RFD  MA+ + L+R + +    ++++ EESL +LL  G+H +  D   E   CGLIP+GQPCT + T GL+W L+ + +A G+LVSTSN     DG G              V +E   P++WT  +K
Sbjct:   20 CLVILNQPL--DNYFRHLWNKALLRACADGGANRLYD-ITEGERESFLPEFINGDFDSIRPEVREYYATKGCELISTPDQDHTDFTKCLKVLQ-------------------------KKIEEKDLKVDVIVTLGGLAGRFDQIMASVNTLFRATHITPFPVIIIQEESLIYLLQPGKHRLHVDTGKEGNWCGLIPVGQPCTQVTTTGLKWNLKNDVLAFGTLVSTSNTY---DGSGV-------------VTVETDHPLLWTMAIK 242          
The following BLAST results are available for this feature:
BLAST of EWM29027.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111545|gb|EWM29027.1|0.000e+0100.00thiamin pyrophosphokinase 1 [Nannochloropsis gadit... [more]
gi|669162004|ref|XP_008616564.1|4.701e-5036.30thiamine pyrophosphokinase [Saprolegnia diclina VS... [more]
gi|698777879|ref|XP_009821983.1|9.258e-5037.17thiamine pyrophosphokinase, partial [Aphanomyces a... [more]
gi|813178332|ref|XP_012205635.1|3.963e-4935.56thiamine pyrophosphokinase [Saprolegnia parasitica... [more]
gi|325190318|emb|CCA24794.1|6.155e-4937.01thiamin pyrophosphokinase putative [Albugo laibach... [more]
gi|635370764|emb|CCI41027.1|1.486e-4837.94unnamed protein product [Albugo candida][more]
gi|1173949202|gb|OQR97270.1|4.942e-4836.70thiamin pyrophosphokinase [Achlya hypogyna][more]
gi|635117058|ref|XP_007981521.1|7.290e-4735.96PREDICTED: thiamin pyrophosphokinase 1 isoform X2 ... [more]
gi|635117054|ref|XP_007981519.1|1.061e-4635.02PREDICTED: thiamin pyrophosphokinase 1 isoform X1 ... [more]
gi|544423481|ref|XP_005551131.1|1.770e-4635.96PREDICTED: thiamin pyrophosphokinase 1 [Macaca fas... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1642rna1642Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications