rna164, rna164 (mRNA) Nannochloropsis gaditana

Overview
Namerna164
Unique Namerna164
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2303
Alignment locationCM002455.1:431438..432400 -

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Properties
Property NameValue
ProductFAM92 protein
Orig transcript idgnl|cribi|Naga_100013g55.9763.mrna
Orig protein idgnl|cribi|Naga_100013g55.9763
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:431438..432400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100013g55gene156Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna164rna164-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30475.1cds164Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna164 ID=rna164|Name=rna164|organism=Nannochloropsis gaditana|type=mRNA|length=2303bp
TGGTGGCCAGTGCATCGTTTCACAACGTTTTCTGTCAAGCTTCACACGGT
CCTTGGTCATACGGTCCTACAGGTTGCGGACAAGGGGTGTAGGTGGTACG
GAAGTTTGAACTGGATTCAGTGGGAACAAAGCATTGAGGTAAGTCAATTG
CCAACTCGCCCTTAAAACAAGGAAGTAACAAATATATCATGCCTGGCACG
CGCCTCTACGTGGGAAACTTGACGCCTTCCGTCACGGGAGATGAGTTGAG
GGAGATTTTCAGCGGCTACGGGCCAATTGATCGCGTGGACATGAAGAAAG
ATGGGTACGCCTTCGTAGAATTCGTGCGCGGCAGAGAAGGAGAGGATGCC
GTTGTTGCGGCCGCCCAAGGCATGAACAAAAAGGAACTGCACGGTTTGAT
ATTGACAGTAGAAGAAGCGAAGGGCCCGAAACGAGAAGGTCCTCGTCCTG
AGATGCAGCGGTCTGATTTTCGGATTCGAGTGGAAGGTATGCCGCGTGAA
GCCACCTGGCAAGATTTGAAGGACTTCGCAAGAGGGAAGAAAGGATTGGC
TCCTTTATACACAGAGGTACTCCGTGGCACTCCGGGCGTAGGGATTATCG
AGTATCACCGCCGCGAGGATATGATTGAAGCTTTGAGCCTCATTCACAAC
ACGGAACTGCGTGGCGTGGTGGTCCAAGTGTACGAGGACACCCCGATGAG
CCGAGACCGCGGGCCTGAGAGGCGACCCGGGTTCAGCCGAAGCCCCCCGG
GGGATTACCGGCGGGGCGACAACCGTTTTCCGCCTCGCGATCGTCCACGG
TCCAGGTCGCGAGAGCGCTACCCGCCCAGCTACATGCCCCCAGACCCTTA
CGCTTACCGTCGAGGGCGCTCTCGGTCTCGCAGCCCCCCGCCCGGTCGTT
ACCCACCTCCCTACCCCGAGGACCCTTATCGCCGCGGCGGCCCTCTCCCC
CCTCCTCCTCAACCGGCTTTCTACGACAACTACGACTACCGTCGTGATTC
TCGCGCTCGCTCCCGCTCCCCCCCTCCTCGCTACGCTCCTCCGTATGAAT
CCCGCTACGTCTCGCCCCCCTCCTCCGGCGGCCGGCCCCGGGACTACAGT
CCCCGTCGTCCAAGGGCCGCGGCAGATGACGACTACCGTTACGCCCCCCC
CCCCCCTCGCTACGCGCCACCAGGACCATACGACGGTGGACGGGAGGGAT
CAGCCGGTGGGTTTGCGGGAGGGAGGTTCCCCGCGGACGGACGCTTCGAG
GAACCCTTTGACGGCGGGCGCCACCCACCCGGACCACCTGCGTCGTCTCG
CCCCCCTGCGCACGCGCCCATGCCAGACATGTACATGCCGGGGCCCCGTC
CCCCGGGCCTGGGTGGAGGGGAGGCTGGTGGAAGCAGGGATCCCCGGCGG
AGGGAATGGGGCGGGGGCCGGTGAGGCTCCCATGGATGGGTTTGGGAGGG
CGTGCAGATTCGCAACATTGTCCGGTCCTGAAGAGGGATGATGGAGCAGA
TGAAAGCTTGATGATCACACAGAGGCCTAGTCGGGCTCAGATTCCGGAGG
CGTGCGCGTGTCAAGGAGGCTTTGAGGGGTTGAAAGGATGTGTCGAAGTG
CTCTGAGGACTCCTTGAGAAGAAGGCGATGTAGAACGCTGTGCCATCGAT
CTACCGGGCATTCCTCGAGGGCTTGACATGGACGGTGTCATGCCTGGGGT
GGTGCAGAGGACCGCGAAGAGACTAGGTTTAAGGAATAATTTGAGAGGAA
ATGAAGGCGCCCCTTGTCAGGCTCGAAGCGCATCGGTCATCTTTTTTTTC
GCCTCCGGACCTCCTTCCCTCCTTTCTCTTGCTCAGCTCCCTGTGCCAGC
GAACCTGACAGTACAATGTATCATCACACCCTCTCTCACTGAGCTCGACG
TTCTCCTCGACAGGATTGGGTGAGGGTGGATGTCGCCGCAACGAGCCTCG
GGACTACAGAAAGAAGTTCTCAGCCTTTACCGACGAGTATTGCGCGCTGC
CAGAGTCAAAGACGCGGGCAAAATAGATGGAGGAACGTACACATTGGCTC
GTACGCGTTTCCGAGAAGATGCTACGTCAGTAAGGCGAATGGATTTTCAG
AAAATTGAATTTTTAATCCGTCAAGGACATAAGCAACTCAAATACTTGAA
CATGCCGAGTGTTTTAAGAGGCGCCTCCGTCACCCCTTCCGCCGCATCGC
GGCATTAAGGAAAGAGGAGACACGACATAATACCTTCTGTAAAGCATGTA
AATAAAGCGTCCTCACACTAACCGAAGTAAAATATGGGCAGCATCAAGTT
TCA
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protein sequence of rna164

>rna164-protein ID=rna164-protein|Name=rna164|organism=Nannochloropsis gaditana|type=polypeptide|length=249bp
MDEKGRVLQGRLDFCERNVTTLRQGVRALLRNHDEGCNVTMDLSQKVRDT
AAQEQFIDLQEDLIAIAECTKRLAEERRTIMCERAEERVISTFDLILSRV
LHPTRLLLKDRERALRKFRAMERKITFSGEQTLLSMLNLEDDADTKQQKL
ANYSECAKHTDEVVDSNFRCFEKSRVLEMKAMLEETLRAEMLYHCRALEI
LEPLCVSMRRLDPDEAMASMTQELDELNTAEDENNGQSKRAHMRGRNRC
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mRNA from alignment at CM002455.1:431438..432400-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna164 ID=rna164|Name=rna164|organism=Nannochloropsis gaditana|type=mRNA|length=963bp|location=Sequence derived from alignment at CM002455.1:431438..432400- (Nannochloropsis gaditana)
GCATATCTCGTAATGTCATACTTTCCTACTTCTCTTGATTAATTTGTTAC
AGCGTTCCCTTGGATATGGACGAAAAGGGTAGAGTATTGCAAGGCCGTCT
CGATTTTTGTGAAAGAAATGTTACAACGCTCCGGCAGGGGGTCAGGGCTC
TTTTAAGAAATCACGATGAAGGATGCAATGTGACAATGGACCTTTCTCAA
AAGGTTCGCGACACGGCTGCACAAGAGCAGTTCATCGATCTGCAAGAAGA
CCTCATCGCAATAGCCGAATGTACCAAGAGATTAGCAGAAGAGCGCAGGA
CGATTATGTGCGAGCGTGCCGAAGAGCGGGTTATCTCTACTTTTGACCTC
ATTTTAAGTCGTGTTCTGCATCCGACAAGGCTTTTGTTGAAAGATAGGGA
GAGAGCTCTTCGCAAATTTCGAGCCATGGAGAGGAAAATTACATGTAAGT
ACATGTGGGGGACTGAATTAAGGGGTCAATGAAAAAGTATTCGGTGACAA
TAGCCCTGCTTGATCTGTAAATATCTTGATAGCGTCACCCTCTTCCTTCT
TCTTCAAGTTTCAGGAGAACAGACTCTGCTGAGCATGCTTAACTTGGAAG
ATGACGCAGATACAAAGCAGCAAAAGCTGGCTAATTACAGCGAGTGCGCC
AAGCATACCGACGAAGTGGTGGACAGTAACTTTCGATGCTTCGAAAAAAG
TAGAGTTCTGGAAATGAAGGCCATGCTGGAGGAGACCTTGCGTGCGGAGA
TGCTGTACCATTGCCGGGCGTTAGAAATCTTGGAGCCCCTGTGCGTCTCC
ATGCGTCGCTTAGATCCGGATGAAGCCATGGCCAGCATGACCCAAGAGCT
AGACGAGCTGAACACCGCGGAGGACGAAAATAATGGGCAGAGCAAAAGAG
CACACATGAGGGGCAGAAACAGATGTTGAAGGAGACAAAGAAAATCAGGG
CAGATTGGGAAAA
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Coding sequence (CDS) from alignment at CM002455.1:431438..432400-

>rna164 ID=rna164|Name=rna164|organism=Nannochloropsis gaditana|type=CDS|length=1500bp|location=Sequence derived from alignment at CM002455.1:431438..432400- (Nannochloropsis gaditana)
TTTCAGGAGAACAGACTCTGCTGAGCATGCTTAACTTGGAAGATGACGCA
GATACAAAGCAGCAAAAGCTGGCTAATTACAGCGAGTGCGCCAAGCATAC
CGACGAAGTGGTGGACAGTAACTTTCGATGCTTCGAAAAAAGTAGAGTTC
TGGAAATGAAGGCCATGCTGGAGGAGACCTTGCGTGCGGAGATGCTGTAC
CATTGCCGGGCGTTAGAAATCTTGGAGCCCCTGTGCGTCTCCATGCGTCG
CTTAGATCCGGATGAAGCCATGGCCAGCATGACCCAAGAGCTAGACGAGC
TGAACACCGCGGAGGACGAAAATAATGGGCAGAGCAAAAGAGCACACATG
AGGGGCAGAAACAGATGTTGAATGGACGAAAAGGGTAGAGTATTGCAAGG
CCGTCTCGATTTTTGTGAAAGAAATGTTACAACGCTCCGGCAGGGGGTCA
GGGCTCTTTTAAGAAATCACGATGAAGGATGCAATGTGACAATGGACCTT
TCTCAAAAGGTTCGCGACACGGCTGCACAAGAGCAGTTCATCGATCTGCA
AGAAGACCTCATCGCAATAGCCGAATGTACCAAGAGATTAGCAGAAGAGC
GCAGGACGATTATGTGCGAGCGTGCCGAAGAGCGGGTTATCTCTACTTTT
GACCTCATTTTAAGTCGTGTTCTGCATCCGACAAGGCTTTTGTTGAAAGA
TAGGGAGAGAGCTCTTCGCAAATTTCGAGCCATGGAGAGGAAAATTACAT
TTTCAGGAGAACAGACTCTGCTGAGCATGCTTAACTTGGAAGATGACGCA
GATACAAAGCAGCAAAAGCTGGCTAATTACAGCGAGTGCGCCAAGCATAC
CGACGAAGTGGTGGACAGTAACTTTCGATGCTTCGAAAAAAGTAGAGTTC
TGGAAATGAAGGCCATGCTGGAGGAGACCTTGCGTGCGGAGATGCTGTAC
CATTGCCGGGCGTTAGAAATCTTGGAGCCCCTGTGCGTCTCCATGCGTCG
CTTAGATCCGGATGAAGCCATGGCCAGCATGACCCAAGAGCTAGACGAGC
TGAACACCGCGGAGGACGAAAATAATGGGCAGAGCAAAAGAGCACACATG
AGGGGCAGAAACAGATGTTGAATGGACGAAAAGGGTAGAGTATTGCAAGG
CCGTCTCGATTTTTGTGAAAGAAATGTTACAACGCTCCGGCAGGGGGTCA
GGGCTCTTTTAAGAAATCACGATGAAGGATGCAATGTGACAATGGACCTT
TCTCAAAAGGTTCGCGACACGGCTGCACAAGAGCAGTTCATCGATCTGCA
AGAAGACCTCATCGCAATAGCCGAATGTACCAAGAGATTAGCAGAAGAGC
GCAGGACGATTATGTGCGAGCGTGCCGAAGAGCGGGTTATCTCTACTTTT
GACCTCATTTTAAGTCGTGTTCTGCATCCGACAAGGCTTTTGTTGAAAGA
TAGGGAGAGAGCTCTTCGCAAATTTCGAGCCATGGAGAGGAAAATTACAT
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Synonyms
Publications