EWM30475.1, cds164 (CDS) Nannochloropsis gaditana

Overview
NameEWM30475.1
Unique Namecds164
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:431957..432335 -
Alignment locationCM002455.1:431472..431842 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30475.1
ProductFAM92 protein
Orig transcript idgnl|cribi|Naga_100013g55.9763.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:431957..432335 -
CM002455.1supercontigCM002455.1:431472..431842 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR009602FAM92
Homology
BLAST of EWM30475.1 vs. NCBI_GenBank
Match: gi|585113139|gb|EWM30475.1| (FAM92 protein [Nannochloropsis gaditana])

HSP 1 Score: 503.056 bits (1294), Expect = 4.420e-180
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0
Query:    1 MDEKGRVLQGRLDFCERNVTTLRQGVRALLRNHDEGCNVTMDLSQKVRDTAAQEQFIDLQEDLIAIAECTKRLAEERRTIMCERAEERVISTFDLILSRVLHPTRLLLKDRERALRKFRAMERKITFSGEQTLLSMLNLEDDADTKQQKLANYSECAKHTDEVVDSNFRCFEKSRVLEMKAMLEETLRAEMLYHCRALEILEPLCVSMRRLDPDEAMASMTQELDELNTAEDENNGQSKRAHMRGRNRC 249
            MDEKGRVLQGRLDFCERNVTTLRQGVRALLRNHDEGCNVTMDLSQKVRDTAAQEQFIDLQEDLIAIAECTKRLAEERRTIMCERAEERVISTFDLILSRVLHPTRLLLKDRERALRKFRAMERKITFSGEQTLLSMLNLEDDADTKQQKLANYSECAKHTDEVVDSNFRCFEKSRVLEMKAMLEETLRAEMLYHCRALEILEPLCVSMRRLDPDEAMASMTQELDELNTAEDENNGQSKRAHMRGRNRC
Sbjct:    1 MDEKGRVLQGRLDFCERNVTTLRQGVRALLRNHDEGCNVTMDLSQKVRDTAAQEQFIDLQEDLIAIAECTKRLAEERRTIMCERAEERVISTFDLILSRVLHPTRLLLKDRERALRKFRAMERKITFSGEQTLLSMLNLEDDADTKQQKLANYSECAKHTDEVVDSNFRCFEKSRVLEMKAMLEETLRAEMLYHCRALEILEPLCVSMRRLDPDEAMASMTQELDELNTAEDENNGQSKRAHMRGRNRC 249          
BLAST of EWM30475.1 vs. NCBI_GenBank
Match: gi|553191943|ref|XP_005855488.1| (hypothetical protein NGA_2122420, partial [Nannochloropsis gaditana CCMP526] >gi|553193906|ref|XP_005855858.1| hypothetical protein NGA_2122410, partial [Nannochloropsis gaditana CCMP526] >gi|422293207|gb|EKU20507.1| hypothetical protein NGA_2122410, partial [Nannochloropsis gaditana CCMP526] >gi|422293575|gb|EKU20875.1| hypothetical protein NGA_2122420, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 150.984 bits (380), Expect = 1.562e-43
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0
Query:   40 TMDLSQKVRDTAAQEQFIDLQEDLIAIAECTKRLAEERRTIMCERAEERVISTFDLILSRVLHPTRLLLKDRERALR 116
            TMDLSQKVRDTAAQEQFIDLQEDLIAIAECTKRLAEERRTIMCERAEERVISTFDLILSRVLHPTRLLLKDRERALR
Sbjct:    1 TMDLSQKVRDTAAQEQFIDLQEDLIAIAECTKRLAEERRTIMCERAEERVISTFDLILSRVLHPTRLLLKDRERALR 77          
BLAST of EWM30475.1 vs. NCBI_GenBank
Match: gi|298710381|emb|CBJ25445.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 93.9745 bits (232), Expect = 1.145e-20
Identity = 48/125 (38.40%), Postives = 78/125 (62.40%), Query Frame = 0
Query:    1 MDEKGRVLQGRLDFCERNVTTLRQGVRALLRNHDEGCNVTMDLSQKVRDTAAQEQFIDLQEDLIAIAECTKRLAEERRTIMCERAEERVISTFDLILSRVLHPTRLLLKDRERALRKFRAMERKI 125
            +DEKGR L GRL+F +RNV  L + +   + +H +G    +  S K++  AAQE F DLQ+ L+ +AE T+R++ ER+ IM +RA+ +V++    I   V+ PT+ LL+DR+  ++     E K+
Sbjct:    3 LDEKGRRLHGRLEFFDRNVAQLIRHISQTVGHHQDGVKHGISFSTKIKTIAAQEPFADLQDRLVGLAEITERISLERKNIMIDRAKSQVLNKLADIKKTVIAPTQALLQDRDSCVKALVKAEEKM 127          
BLAST of EWM30475.1 vs. NCBI_GenBank
Match: gi|695403790|ref|XP_009523371.1| (hypothetical protein PHYSODRAFT_491292 [Phytophthora sojae] >gi|348680838|gb|EGZ20654.1| hypothetical protein PHYSODRAFT_491292 [Phytophthora sojae])

HSP 1 Score: 82.8037 bits (203), Expect = 1.672e-15
Identity = 61/225 (27.11%), Postives = 110/225 (48.89%), Query Frame = 0
Query:    1 MDEKGRVLQGRLDFCERNVTTLRQGVRALLRNHDEGCNVTMDLSQKVRDTAAQEQFIDLQEDLIAIAECTKRLAEERRTIMCERAEERVISTFDLILSRVLHPTRLLLKDRERALRKFRAMERKITFSGEQTLLSMLNLEDDADTKQQKLANYSECAKHTDEV---VDSNFRCFEKSRVLEMKAMLEETLRAEMLYHCRALEILEPLCVSMRRLDPDEAMASMTQ 222
            M ++ R LQ +L F ERN   L + V  +++  +E        ++ + D AAQE+   L   L ++ EC ++LA E   +M  R E  ++     I    + P + LL+DRE+A++    +E K+     Q     L     A  K++KL   S+  +  + V   +D++   F++ R+ +MK ++ E  R+   YH + LE+    C ++ +L P + +   TQ
Sbjct:    1 MGQRERSLQAQLQFMERNGRALEELVAKMMKVREEQEAFLGAFARSLEDIAAQEECAPLARCLGSLGECGQKLATESHDVMLLRPETEILQVVTQIQDWAIVPMKRLLEDREKAIK----IEAKL-----QKEYDELRRGSSAKEKEKKLRMLSDQKRRVENVNALLDTHMENFDRYRIQKMKKIVSELARSHAFYHAKGLELFAGPCETIAKLHPSDTVKVTTQ 216          
BLAST of EWM30475.1 vs. NCBI_GenBank
Match: gi|1214668970|gb|OWY94400.1| (hypothetical protein PHMEG_00035889 [Phytophthora megakarya])

HSP 1 Score: 81.2629 bits (199), Expect = 4.602e-15
Identity = 57/216 (26.39%), Postives = 108/216 (50.00%), Query Frame = 0
Query:    1 MDEKGRVLQGRLDFCERNVTTLRQGVRALLRNHDEGCNVTMDLSQKVRDTAAQEQFIDLQEDLIAIAECTKRLAEERRTIMCERAEERVISTFDLILSRVLHPTRLLLKDRERALRKFRAMERKITFSGEQTLLSMLNLEDDADTKQQKLANYSECAKHTDEVVDSNFRCFEKSRVLEMKAMLEETLRAEMLYHCRALEILEPLCVSMRRLDPDEA 216
            M+++GR L  +L F ERN   L + V  +L+  +E     +  ++ V D AAQE+   L + L ++ E  ++LA E   +M  R E  ++     I    + P + LL+DRE+A++    +E K+    E   L   N   + + K + L++     ++ + ++D++   F++ R+ +MK +L E  R+   YH + LE+    C ++      +A
Sbjct:    1 MEQRGRTLAAQLQFMERNSRALEELVAKMLKAREEQETFLVAFAKSVEDIAAQEECTGLAKCLGSLGESGQKLASESHDVMMLRPETEILQVVTQIQDWAIVPMKRLLEDREKAMK----IEAKL--QKEYDELKRGNTAKEKEKKLRMLSDQKRRVENVNTLLDAHMENFDRYRIQKMKKILSELARSMAFYHAKGLELFAVPCQTIANFHTTDA 210          
BLAST of EWM30475.1 vs. NCBI_GenBank
Match: gi|566033829|gb|ETI56740.1| (hypothetical protein F443_00812 [Phytophthora parasitica P1569])

HSP 1 Score: 80.1073 bits (196), Expect = 1.473e-14
Identity = 60/225 (26.67%), Postives = 109/225 (48.44%), Query Frame = 0
Query:    1 MDEKGRVLQGRLDFCERNVTTLRQGVRALLRNHDEGCNVTMDLSQKVRDTAAQEQFIDLQEDLIAIAECTKRLAEERRTIMCERAEERVISTFDLILSRVLHPTRLLLKDRERALRKFRAMERKITFSGEQTLLSMLNLEDDADTKQQKLANYSECAKHTDEV---VDSNFRCFEKSRVLEMKAMLEETLRAEMLYHCRALEILEPLCVSMRRLDPDEAMASMTQ 222
            M+++GR    +L F ERN   L + V  +++  +E        ++ + D AAQE+   L + L ++ EC ++L  E   +M  R E  V+     I    + P + LL+DRE+A++    +E K+     Q     L     A  K++KL   S+  +  + V   +D++   F++ R+ +MK ++ E  R++  YH + LE+    C  + +L   EA+    Q
Sbjct:    1 MEQRGRTFAAQLQFMERNGRALEELVAKMMKAREEQEAFLGSFAKSLEDIAAQEECEPLAQCLGSLGECGQKLVSESHDVMMLRPEMEVLQVVTQIQDWAIVPMKRLLEDREKAIK----IEAKL-----QKEYDELRRGSSAKEKEKKLRMLSDQKRRVENVNALLDTHMDNFDRYRIQKMKKIVSELARSQAFYHAKGLELFAVPCQDIAKLQSTEAVKRTPQ 216          
BLAST of EWM30475.1 vs. NCBI_GenBank
Match: gi|570337524|gb|ETO85472.1| (hypothetical protein F444_00832 [Phytophthora parasitica P1976])

HSP 1 Score: 79.7221 bits (195), Expect = 2.108e-14
Identity = 60/225 (26.67%), Postives = 109/225 (48.44%), Query Frame = 0
Query:    1 MDEKGRVLQGRLDFCERNVTTLRQGVRALLRNHDEGCNVTMDLSQKVRDTAAQEQFIDLQEDLIAIAECTKRLAEERRTIMCERAEERVISTFDLILSRVLHPTRLLLKDRERALRKFRAMERKITFSGEQTLLSMLNLEDDADTKQQKLANYSECAKHTDEV---VDSNFRCFEKSRVLEMKAMLEETLRAEMLYHCRALEILEPLCVSMRRLDPDEAMASMTQ 222
            M+++GR    +L F ERN   L + V  +++  +E        ++ + D AAQE+   L + L ++ EC ++L  E   +M  R E  V+     I    + P + LL+DRE+A++    +E K+     Q     L     A  K++KL   S+  +  + V   +D++   F++ R+ +MK +L E  R++  YH + LE+    C  + +L   +A+    Q
Sbjct:    1 MEQRGRTFAAQLQFMERNGRALEELVAKMMKAREEQEAFLGSFAKSLEDIAAQEECEPLAQCLGSLGECGQKLVSESHDVMMLRPEMEVLQVVTQIQDWAIVPMKRLLEDREKAIK----IEAKL-----QKEYDELRRGSSAKEKEKKLRMLSDQKRRVENVNALLDTHMDNFDRYRIQKMKKILSELARSQAFYHAKGLELFAVPCQDIAKLQSTDAVKRTPQ 216          
BLAST of EWM30475.1 vs. NCBI_GenBank
Match: gi|675162999|ref|XP_008890384.1| (hypothetical protein PPTG_00691 [Phytophthora parasitica INRA-310] >gi|567971519|gb|ETK96525.1| hypothetical protein L915_00763 [Phytophthora parasitica] >gi|567999844|gb|ETL49877.1| hypothetical protein L916_00756 [Phytophthora parasitica] >gi|568029029|gb|ETM02961.1| hypothetical protein L917_00727 [Phytophthora parasitica] >gi|568059644|gb|ETM56216.1| hypothetical protein L914_00743 [Phytophthora parasitica] >gi|568109702|gb|ETN24309.1| hypothetical protein PPTG_00691 [Phytophthora parasitica INRA-310] >gi|570961531|gb|ETP26510.1| hypothetical protein F441_00805 [Phytophthora parasitica CJ01A1] >gi|570998298|gb|ETP54546.1| hypothetical protein F442_00775 [Phytophthora parasitica P10297])

HSP 1 Score: 78.5666 bits (192), Expect = 5.563e-14
Identity = 59/225 (26.22%), Postives = 109/225 (48.44%), Query Frame = 0
Query:    1 MDEKGRVLQGRLDFCERNVTTLRQGVRALLRNHDEGCNVTMDLSQKVRDTAAQEQFIDLQEDLIAIAECTKRLAEERRTIMCERAEERVISTFDLILSRVLHPTRLLLKDRERALRKFRAMERKITFSGEQTLLSMLNLEDDADTKQQKLANYSECAKHTDEV---VDSNFRCFEKSRVLEMKAMLEETLRAEMLYHCRALEILEPLCVSMRRLDPDEAMASMTQ 222
            M+++GR    +L F ERN   L + V  +++  +E        ++ + D AAQE+   L + L ++ EC ++L  E   +M  R E  V+     I    + P + LL+DRE+A++    +E K+     Q     L     A  K++KL   S+  +  + V   +D++   F++ R+ +MK ++ E  R++  YH + LE+    C  + +L   +A+    Q
Sbjct:    1 MEQRGRTFAAQLQFMERNGRALEELVAKMMKAREEQEAFLGSFAKSLEDIAAQEECEPLAQCLGSLGECGQKLVSESHDVMMLRPEMEVLQVVTQIQDWAIVPMKRLLEDREKAIK----IEAKL-----QKEYDELRRGSSAKEKEKKLRMLSDQKRRVENVNALLDTHMDNFDRYRIQKMKKIVSELARSQAFYHAKGLELFAVPCQDIAKLQSTDAVKRTPQ 216          
BLAST of EWM30475.1 vs. NCBI_GenBank
Match: gi|301120904|ref|XP_002908179.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262103210|gb|EEY61262.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 77.411 bits (189), Expect = 1.578e-13
Identity = 53/211 (25.12%), Postives = 106/211 (50.24%), Query Frame = 0
Query:    1 MDEKGRVLQGRLDFCERNVTTLRQGVRALLRNHDEGCNVTMDLSQKVRDTAAQEQFIDLQEDLIAIAECTKRLAEERRTIMCERAEERVISTFDLILSRVLHPTRLLLKDRERALRKFRAMERKITFSGEQTLLSMLNLEDDADTKQQKLANYSECAKHTDEVVDSNFRCFEKSRVLEMKAMLEETLRAEMLYHCRALEILEPLCVSMRRL 211
            M+ +GR L  +L F ERN   L + V  +++  +E        ++ + D AAQE+   L + L ++ EC+++L  E   +M  R E  ++     I    + P + LL+DRE+A +    +E K+    E+  L   +   + + K + L++     ++ + ++D +   F++ R+ +MK ++ E  R++  YH + LE+    C  + +L
Sbjct:    1 MEHRGRTLAAQLQFMERNGRALEELVAKMMKAREEQEAFLGSFAKSLEDIAAQEECAPLAQCLGSLGECSQKLVSESHDVMMLRPETEILQVVTQIQDWAIVPMKRLLEDREKATK----IEAKLQKEYEE--LKRGSSTKEKEKKLRMLSDQKRRVENVNSLLDRHMESFDRYRMQKMKKIVSELARSQAFYHAKGLELFTTSCQGVAKL 205          
BLAST of EWM30475.1 vs. NCBI_GenBank
Match: gi|970630165|gb|KUF77185.1| (hypothetical protein AM587_10013614 [Phytophthora nicotianae])

HSP 1 Score: 76.6406 bits (187), Expect = 3.143e-13
Identity = 59/225 (26.22%), Postives = 108/225 (48.00%), Query Frame = 0
Query:    1 MDEKGRVLQGRLDFCERNVTTLRQGVRALLRNHDEGCNVTMDLSQKVRDTAAQEQFIDLQEDLIAIAECTKRLAEERRTIMCERAEERVISTFDLILSRVLHPTRLLLKDRERALRKFRAMERKITFSGEQTLLSMLNLEDDADTKQQKLANYSECAKHTDEV---VDSNFRCFEKSRVLEMKAMLEETLRAEMLYHCRALEILEPLCVSMRRLDPDEAMASMTQ 222
            M+++GR    +L F ERN   L + V  +++  +E        ++ + D AAQE+   L + L ++ EC ++L  E   +M  R E  V+     I    + P + LL+DRE A++    +E K+     Q     L     A  K++KL   S+  +  + V   +D++   F++ R+ +MK ++ E  R++  YH + LE+    C  + +L   +A+    Q
Sbjct:    1 MEQRGRTFAAQLQFMERNGRALEELVAKMMKAREEQEAFLGSFAKSLEDIAAQEECEPLAQCLGSLGECGQKLVSESHDVMMLRPEMEVLQVVTQIQDWAIVPMKRLLEDREXAIK----IEAKL-----QKEYDELRRGSSAKEKEKKLRMLSDQKRRVENVNALLDTHMDNFDRYRIQKMKKIVSELARSQAFYHAKGLELFAVPCQDIAKLQSMDAVKRTPQ 216          
The following BLAST results are available for this feature:
BLAST of EWM30475.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113139|gb|EWM30475.1|4.420e-180100.00FAM92 protein [Nannochloropsis gaditana][more]
gi|553191943|ref|XP_005855488.1|1.562e-43100.00hypothetical protein NGA_2122420, partial [Nannoch... [more]
gi|298710381|emb|CBJ25445.1|1.145e-2038.40conserved unknown protein [Ectocarpus siliculosus][more]
gi|695403790|ref|XP_009523371.1|1.672e-1527.11hypothetical protein PHYSODRAFT_491292 [Phytophtho... [more]
gi|1214668970|gb|OWY94400.1|4.602e-1526.39hypothetical protein PHMEG_00035889 [Phytophthora ... [more]
gi|566033829|gb|ETI56740.1|1.473e-1426.67hypothetical protein F443_00812 [Phytophthora para... [more]
gi|570337524|gb|ETO85472.1|2.108e-1426.67hypothetical protein F444_00832 [Phytophthora para... [more]
gi|675162999|ref|XP_008890384.1|5.563e-1426.22hypothetical protein PPTG_00691 [Phytophthora para... [more]
gi|301120904|ref|XP_002908179.1|1.578e-1325.12conserved hypothetical protein [Phytophthora infes... [more]
gi|970630165|gb|KUF77185.1|3.143e-1326.22hypothetical protein AM587_10013614 [Phytophthora ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna164rna164Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications