rna1631, rna1631 (mRNA) Nannochloropsis gaditana

Overview
Namerna1631
Unique Namerna1631
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1774
Alignment locationCM002457.1:1106777..1107815 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100024g1.4304.mrna
Orig protein idgnl|cribi|Naga_100024g1.4304
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1106777..1107815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100024g1gene1568Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1631rna1631-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29046.1cds1627Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1631 ID=rna1631|Name=rna1631|organism=Nannochloropsis gaditana|type=mRNA|length=1774bp
ACCAACATACAAGTGCTACCGCGCGACACAACACTTTTCGTGAAGGGTTC
TTCATTCCGGTTGACATTGTCAAGCTTTTTTGGCAGTGTCAGGAATAAAA
TTGTTGTATGTGGGCCGACCTGGAGCCCGCACCAGACTTCTTTTTGCTCT
TCTGGTGCGAGGATAAGAAATACTATCGAAGTCCAATTTGATTACCCATT
TGCCGCATGTCCCCTTTCCACGCACCATCCACCAGAACAATCATGCCGTC
TTCAGGCTACAGCGGTTCTTTTGCGCGCGATAGCCATAGGGAGCATGAAC
GTGGCCATCGTCATCGGGAGAGGGACCGGGACAGGCATGATCGTGATGGC
GGCAGTGGGAGGAAACGGGCCCGGGAGAGAAGCAGGGAGCGTATTGACAC
GCATCCGAGGGACAACAGTAGCGTGCGTAGTTGTTTATCACCACGCCGAC
GGAGCAATGGGTCCGAGGGAGATGGCAGGGGGCGTCCGGCAACACATGTC
TCGCGCGTCTCGTCCTCCCCGTTGCCTTCCCGCGGAGGCGCACATGCTAA
GCGGAGTCCTAGCCGTCCTCCACGCAACGAGCAACCACCACCCCTCCCAC
CAGACACACATCTGGCCTTCTGCGTCAGCTCTTGCGCTTTCATCGTAGAA
ATGGGGAAGGCATTGCATTTGGGCAAAGTGGCCACCCATACCGCCCTCGT
CTTCTTCCATCGCTTTTTCAAGCATCAGTCTTTCCGGTCTCACGATCGAT
TGCTGGTGGCAGCTGCTTGCATTTATCTGGCCGCCAAGGTGGAAGAGCGG
AACAACGTGAAGCTATCCCTCATCGTCGTGGCGTATTTGAAAAGACTGGG
AGTGCTTCCTCCAGAGGTGGACGCCCAGGATTACAACAGGAACGCCGTGG
CCCGCGAAGAAGTGCCGACGTGGAAGTCACGGGTCATCACGTACGAGCGC
TGTCTTCTGTACACCATGGCTTTCGATCTCACGGTCGTCCACCCTTTCAA
AGCCTTGCAGGATTTGATGAAGACGGTGCGCGACGTGATGGCGGAGGAAG
GGAAAAAAACGGGACTGTCGGGGGGCCCCGGGAAGGCCCTGGCGTCACTC
CCCTTCCCCTCCGCCTCGAGCTCGCCCGCTGCCTCGGCCTTGGACCATCG
GACCGTGTTCGCCCAGGCGTGCAAGTTCTTGAACGACAGTTTCTTCCTCC
CTGCCCTCATCGAGGTGGACGCCTCCTATTCGGCCGCCCTGGCCCTGTAT
TTAACCCTGGTGCTGTACGACATCAAGCCTCCCGCGGGGAAAGGGAGCTG
GTTGGAGGTATGGCATATCCAGGACGAACCACGCTTTCTGAGGGATTGCC
TGCTGGCAGTGAAGACCTACGGGGAGGAGAGCGGAAAACGTCTGAATCTG
GAGCCGGTCCCGGATCCGGCCGCGGTGGAAGTGCCCCCGGCCGAGGATGC
GCTCGGCAGGGATATGGCGACGTTGTACGGTGGCAGCAAGGCGGGGGGGA
TGCCGGGGGGGCTGCTGCGGAATTTGACGCCGTTAGTGTAGGGGAAAAGG
GGGGGTAGTGGTAGAGTGACGGGACAGTGGTCATATGCTTTGTGGGGTCT
CGGGGTGGCCAAGCACGCAAGTAGGATAGACCGTCACTTCCCGAGGTTTC
TGCGTGGCGGTGCCGGGGAAAAACGTGAGCCTGAGCCTCACTCTTCGGGT
CGACGGACAGGCGACGGATTCCCCCGTCGTCGCGTCTCAAATAATCAAAA
TAAATGGTAAAAAGCTATGCATGC
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protein sequence of rna1631

>rna1631-protein ID=rna1631-protein|Name=rna1631|organism=Nannochloropsis gaditana|type=polypeptide|length=231bp
MKLDRKTGGHKDDNGASSGNQTTMEKDARSVANAARRQRTGRVGGNEDEG
EEGKEGVEREEGGPPPGEGGASGRGRGTKGKAAASSLAPGGPEVSAMSVS
SEAASVPECIELASVGAGQGGGGGSGGGGSDGGGGGGSGDGINEMEPPGS
SPARSSAALALASMFRMPQGEERAGEGGKEGGMREAGVENGDRHEDGFAF
PLVDGGAKRGSKRGPRGGEEGGGRRRRRGRR
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mRNA from alignment at CM002457.1:1106777..1107815+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1631 ID=rna1631|Name=rna1631|organism=Nannochloropsis gaditana|type=mRNA|length=1039bp|location=Sequence derived from alignment at CM002457.1:1106777..1107815+ (Nannochloropsis gaditana)
TGAAAGCTGTGACTTTCAACAGCACTCTTTTGCACCGCAAAGGCATGCAT
TGACGCCATTTGATCAATATTCAAcacagggaaaaaaagcccATCGCATA
CTTTAGGTCCAGCGCGTAAAGTGTGGGAGCCGCATGGCCTAGGGCTGTGA
CGGAGCGACCCTGCCGTTTTGCAATCCAAGCTGAATTTCGGACGAGCTTC
GACGGAAAAAGACGTTTGGCTCCTTTTGGTCGTCCTTTTCTCTGGAAGCA
TCGAGGGTGCGAGACTTTAAGGTCGCCGCGTCAGAGTCGTGCGTGACTTA
ATTTTATCTTGGCCGCCGGCGGGTGCGTCTCGAAGAAGGAAACAATGAAA
TTGGACAGAAAAACTGGCGGGCATAAGGATGATAATGGCGCCTCTTCGGG
CAACCAAACGACCATGGAGAAGGATGCGAGAAGCGTTGCAAATGCGGCAC
GCAGGCAACGAACGGGGCGCGTCGGTGGGaatgaagacgagggcgaggaa
gggaaggaaggagtggaaagggaggaaggaggaccaCCacccggagaagg
aggagcgagcgGCCGAGGCCGAGGGACGAAAGGGAAGGCCGCCGCGtctt
cccttgcccctgGAGGACCGGAAGTCTCCGCCATGAGCGTTTCCTCAGAG
GCGGCTTCGGTCCCGGAGTGCATAGAATTGGCAAGCGTGGGTGCAGGAca
aggtggcgggggaggaagtggcgggggaggaagcgacggaggagggggtg
gagggtcAGGGGATGGGATAAATGAGATGGAACCACCGGGCTCGAGTCCT
GCTCGGTCCTCGGCGGCCTTAGCGCTGGCGTCCATGTTTCGCATGCCCCA
AGGAGAGGAacgggcaggggaaggagggaaagagggagggatgagagagg
cgggggtggagaaCGGGGACCGGCACGAGGACGGCTTTGCATTTCCCTTG
GTAGACGGTGGGGCGAAgcgagggagcaagagggggccgcgaggggggga
ggaggggggagggaggaggaggaggagggggaggaggga
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Coding sequence (CDS) from alignment at CM002457.1:1106777..1107815+

>rna1631 ID=rna1631|Name=rna1631|organism=Nannochloropsis gaditana|type=CDS|length=695bp|location=Sequence derived from alignment at CM002457.1:1106777..1107815+ (Nannochloropsis gaditana)
ATGAAATTGGACAGAAAAACTGGCGGGCATAAGGATGATAATGGCGCCTC
TTCGGGCAACCAAACGACCATGGAGAAGGATGCGAGAAGCGTTGCAAATG
CGGCACGCAGGCAACGAACGGGGCGCGTCGGTGGGaatgaagacgagggc
gaggaagggaaggaaggagtggaaagggaggaaggaggaccaCCacccgg
agaaggaggagcgagcgGCCGAGGCCGAGGGACGAAAGGGAAGGCCGCCG
CGtcttcccttgcccctgGAGGACCGGAAGTCTCCGCCATGAGCGTTTCC
TCAGAGGCGGCTTCGGTCCCGGAGTGCATAGAATTGGCAAGCGTGGGTGC
AGGAcaaggtggcgggggaggaagtggcgggggaggaagcgacggaggag
ggggtggagggtcAGGGGATGGGATAAATGAGATGGAACCACCGGGCTCG
AGTCCTGCTCGGTCCTCGGCGGCCTTAGCGCTGGCGTCCATGTTTCGCAT
GCCCCAAGGAGAGGAacgggcaggggaaggagggaaagagggagggatga
gagaggcgggggtggagaaCGGGGACCGGCACGAGGACGGCTTTGCATTT
CCCTTGGTAGACGGTGGGGCGAAgcgagggagcaagagggggccgcgagg
gggggaggaggggggagggaggaggaggaggagggggaggaggga
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Synonyms
Publications