rna1630, rna1630 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1630
Unique Name	rna1630
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1667
Alignment location	CM002457.1:1102594..1104367 +

Link to JBrowse

Properties


Property Name	Value
Product	Cyclin C/H/T/L
Orig transcript id	gnl\|cribi\|Naga_100024g2.4319.mrna
Orig protein id	gnl\|cribi\|Naga_100024g2.4319
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:1102594..1104367 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100024g2	gene1567	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1630	rna1630-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29061.1	cds1626	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:1102594..1104367+
coding sequence from alignment at CM002457.1:1102594..1104367+

mRNA sequence

>rna1630 ID=rna1630|Name=rna1630|organism=Nannochloropsis gaditana|type=mRNA|length=1667bp
AAGACGGCATGATTGTTCTGGTGGATGGTGCGTGGAAAGGGGACATGCGG
CAAATGGGTAATCAAATTGGACTTCGATAGTATTTCTTATCCTCGCACCA
GAAGAGCAAAAAGAAGTCTGGTGCGGGCTCCAGGTCGGCCCACATACAAC
AATTTTATTCCTGACACTGCCAAAAAAGCTTGACAATGTCAACCGGAATG
AAGAACCCTTCACGAAAAGTGTTGTGTCGCGCGGTAGCACTTGTATGTTG
GTCTCTTCGCCTTTGTTTTCCGTCCTCACCACCGTGTCGCCCGACATTAT
TTCATGGTAAACATCCCACCCGCGAACCGCCTGCCTCACCTCCCCTCCCC
TGTCGACTTTCTGAATTTTTTCGTGCTCTGTCTTATGTACCAGCGACTCT
CTCACTCTCCTCTTCTACATATGACAGTGGTGCCTACAAAGTATGCCCTC
GCCGCGCTGGTGTGCGGAGGGCTCGGAAGATTTGCGGCTTCCCGGTATCG
AGGAAGACCGGGACCTATGGGAGGCATACCGAAGACGATTTGAGGAGGAT
GGCTATCTGGTCCTTGAGGGCTATTGGTCCAAGGCCACGTGCACAGCTTT
GCGTGAGCGCATGGATCATCTGGTGGCGGGCTTTGATCTCGCGGCCCACG
ATTCTGTCTTTTCCACGGACGAACAAAACCGGACGTCCGACACCTATTTT
CTGGAGAGCGGGGACAAGATACATTATTTTTGGGAAGAAGGAGCCATCGA
CAAGGCCACTGGCGCATTTCGTCAGCCTCGAGCTACCAGCATTAATAAAG
TGGGGCACGCGCTGCACGATTTGGACCCGCTTTTCCAAAAGGTTACATAT
ACACCCCAAATAGGTCAATTGGCGCGGGCGGTAGGCGGGCTGCACGTGCC
CCTTGTCGCCCAAAGCATGTACATATTCAAGCAACCGCGTATAGGCGGGA
AAGTTGGCGCGCACCAAGATGGAACGTTCTTGTACACGGAGCCTCAATCC
GTGGTCGGGTTCTGGTGGGCTTTGGAGGATTGCACGCAGAAGAATGGGTG
CCTATGGGCCGTCCCCGGCTCACACCGGCAGGGCGTTTCTCGGCGTTTCC
GCAGGCGCAATGACAACAAAGGGACAGAATTCTACCCTCCGGAAGCAGTG
GAATGGGATTTGAGTGGGGGAATCCCGTTGGAAGTGAAGGCGGGGGCGTT
GGTGCTCCTGCACCACGCTCTGGTCCACTACAGCCTGGAGAACGCCTCGG
CAGCCTCAAGGCACGCCTACAGCATTCATGTGGTAGAGGGGGATGGCAGC
TCTTTGTACCCCCAGGATAATTGGCTGCAGCGTGGCTCCACGATGCCGTT
CCAGCCATTGCCGTGAAGGAAAGAGGGGGGGGGACAAAATTTATAACATT
GTTAAAGGTGCCTGCGGAAAGAGGCACGTATGGAGAAAAAAAATGGCAAG
TCGGCGTGTACATCCATGTATCTTTGCTTTGATATTTTCGAACTCGTAAA
GAGGGTAGCGCTAGCATCCTCTATATTCCATCGGGCGACTCCTCCCCCCG
ATCTCCTCCGAGAAGTCCTCCAGACCTAACGTGCGCATGCACACTGCGAC
CATAGGACCTGACGTCCCACAGAGAAGGAATACGGCTCAGACACGTTCAA
TGTATCGCGCCGATCCC

protein sequence of rna1630

>rna1630-protein ID=rna1630-protein|Name=rna1630|organism=Nannochloropsis gaditana|type=polypeptide|length=444bp
MSPFHAPSTRTIMPSSGYSGSFARDSHREHERGHRHRERDRDRHDRDGGS
GRKRARERSRERIDTHPRDNSSVRSCLSPRRRSNGSEGDGRGRPATHVSR
VSSSPLPSRGGAHAKRSPSRPPRNEQPPPLPPDTHLAFCVSSCAFIVEMG
KALHLGKVATHTALVFFHRFFKHQSFRSHDRLLVAAACIYLAAKVEERNN
VKLSLIVVAYLKRLGVLPPEVDAQDYNRNAVAREEVPTWKSRVITYERCL
LYTMAFDLTVVHPFKALQDLMKTVRDVMAEEGKKTGLSGGPGKALASLPF
PSASSSPAASALDHRTVFAQACKFLNDSFFLPALIEVDASYSAALALYLT
LVLYDIKPPAGKGSWLEVWHIQDEPRFLRDCLLAVKTYGEESGKRLNLEP
VPDPAAVEVPPAEDALGRDMATLYGGSKAGGMPGGLLRNLTPLV

mRNA from alignment at CM002457.1:1102594..1104367+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1630 ID=rna1630|Name=rna1630|organism=Nannochloropsis gaditana|type=mRNA|length=1774bp|location=Sequence derived from alignment at CM002457.1:1102594..1104367+ (Nannochloropsis gaditana)
ACCAACATACAAGTGCTACCGCGCGACACAACACTTTTCGTGAAGGGTTC
TTCATTCCGGTTGACATTGTCAAGCTTTTTTGGCAGTGTCAGGAATAAAA
TTGTTGTATGTGGGCCGACCTGGAGCCCGCACCAGACTTCTTTTTGCTCT
TCTGGTGCGAGGATAAGAAATACTATCGAAGTCCAATTTGATTACCCATT
TGCCGCATGTCCCCTTTCCACGCACCATCCACCAGAACAATCATGCCGTC
TTCAGGCTACAGCGGTTCTTTTGCGCGCGATAGCCATAGGGAGCATGAAC
GTGGCCATCGTCATCGGGAGAGGGACCGGGACAGGCATGATCGTGATGGC
GGCagtgggaggaaacgggccCGGGAGAGAAGCAGGGAGCGTATTGACAC
GCATCCGAGGGACAACAGTAGCGTGCGTAGTTGTTTATCACCACGCCGAC
GGAGCAATGGGTCCGAGGGAGATGGCAGGGGGCGTCCGGCAACACATGTC
TCGCgcgtctcgtcctccccgttgcCTTCCCGCGGAGGCGCACATGCTAA
GCGGAGTCCtagccgtcctccacgcaaCGAGCaaccaccacccctcccac
cagaCACACATCTGGCCTTCTGCGTCAGCTCTTGCGCTTTCATCGTAGAA
ATGGGGAAGGCATTGCATTTGGGCAAAGTGGCCACCCATAccgccctcgt
cttcttccatcgCTTTTTCAAGCATCAGTCTTTCCGGTCTCACGATCGAT
TGCTGGTGGCAGCTGCTTGCATTTATCTGGCCGCCAAGGTGGAAGAGCGG
AACAACGTGAAGCTATCCCTCATCGTCGTGGCGTATTTGAAAAGACTGGG
AGTGCTTCCTCCAGAGGTGGACGCCCAGGATTACAACAGGAACGCCGTGG
CCCGCGAAGAAGTGCCGACGTGGAAGTCACGGGTCATCACGTACGAGCGC
TGTCTTCTGTACACCATGGCTTTCGATCTCACGGTCGTCCACCCTTTCAA
AGCCTTGCAGGATTTGATGAAGACGGTGCGCGACGtgatggcggaggaag
ggaaaaaaacgGGACTGTCGGGGGGCCCCGGGAAGGCCCTGGCGtcactc
cccttcccctccgcctcgagctCGCCCGCTGCCTCGGCCTTGGACCATCG
GACCGTGTTCGCCCAGGCGTGCAAGTTCTTGAACGAcagtttcttcctcc
ctgccctcatCGAGGTGGACGCCTCCTATTcggccgccctggccctgtaT
TTAACCCTGGTGCTGTACGACATCAAGCCTCccgcggggaaagggagctg
GTTGGAGGTATGGCATATCCAGGACGAACCACGCTTTCTGAGGGATTGCC
TGCTGGCAGTGAAGACCtacggggaggagagcggaaAACGTCTGAATCTG
GAGCCGGTCCCGGATCCGGCCGCGGTGGAAGTGCCCCCGGCCGAGGATGC
GCTCGGCAGGGATATGGCGACGTTGTACGGTGGCagcaaggcggggggga
tgccGGGGGGGCTGCTGCGGAATTTGACGCCGTTAGTgtaggggaaaagg
gggggtaGTGGTAGAGTGACGGGACAGTGGTCATATGCTTTGTGGGGTCT
CGGGGTGGCCAAGCACGCAAGTAGGATAGACCGTCACTTCCCGAGGTTTC
TGCGTGGCGGTGCCGGGGAAAAACGTGAGCCTGAGCCTCACTCTTCGGGT
CGACGGACAGGCGACGGATTCCCCCGTCGTCGCGTCTCAAATAATCAAAA
TAAATGGTAAAAAGCTATGCATGC

Coding sequence (CDS) from alignment at CM002457.1:1102594..1104367+

>rna1630 ID=rna1630|Name=rna1630|organism=Nannochloropsis gaditana|type=CDS|length=1335bp|location=Sequence derived from alignment at CM002457.1:1102594..1104367+ (Nannochloropsis gaditana)
ATGTCCCCTTTCCACGCACCATCCACCAGAACAATCATGCCGTCTTCAGG
CTACAGCGGTTCTTTTGCGCGCGATAGCCATAGGGAGCATGAACGTGGCC
ATCGTCATCGGGAGAGGGACCGGGACAGGCATGATCGTGATGGCGGCagt
gggaggaaacgggccCGGGAGAGAAGCAGGGAGCGTATTGACACGCATCC
GAGGGACAACAGTAGCGTGCGTAGTTGTTTATCACCACGCCGACGGAGCA
ATGGGTCCGAGGGAGATGGCAGGGGGCGTCCGGCAACACATGTCTCGCgc
gtctcgtcctccccgttgcCTTCCCGCGGAGGCGCACATGCTAAGCGGAG
TCCtagccgtcctccacgcaaCGAGCaaccaccacccctcccaccagaCA
CACATCTGGCCTTCTGCGTCAGCTCTTGCGCTTTCATCGTAGAAATGGGG
AAGGCATTGCATTTGGGCAAAGTGGCCACCCATAccgccctcgtcttctt
ccatcgCTTTTTCAAGCATCAGTCTTTCCGGTCTCACGATCGATTGCTGG
TGGCAGCTGCTTGCATTTATCTGGCCGCCAAGGTGGAAGAGCGGAACAAC
GTGAAGCTATCCCTCATCGTCGTGGCGTATTTGAAAAGACTGGGAGTGCT
TCCTCCAGAGGTGGACGCCCAGGATTACAACAGGAACGCCGTGGCCCGCG
AAGAAGTGCCGACGTGGAAGTCACGGGTCATCACGTACGAGCGCTGTCTT
CTGTACACCATGGCTTTCGATCTCACGGTCGTCCACCCTTTCAAAGCCTT
GCAGGATTTGATGAAGACGGTGCGCGACGtgatggcggaggaagggaaaa
aaacgGGACTGTCGGGGGGCCCCGGGAAGGCCCTGGCGtcactccccttc
ccctccgcctcgagctCGCCCGCTGCCTCGGCCTTGGACCATCGGACCGT
GTTCGCCCAGGCGTGCAAGTTCTTGAACGAcagtttcttcctccctgccc
tcatCGAGGTGGACGCCTCCTATTcggccgccctggccctgtaTTTAACC
CTGGTGCTGTACGACATCAAGCCTCccgcggggaaagggagctgGTTGGA
GGTATGGCATATCCAGGACGAACCACGCTTTCTGAGGGATTGCCTGCTGG
CAGTGAAGACCtacggggaggagagcggaaAACGTCTGAATCTGGAGCCG
GTCCCGGATCCGGCCGCGGTGGAAGTGCCCCCGGCCGAGGATGCGCTCGG
CAGGGATATGGCGACGTTGTACGGTGGCagcaaggcgggggggatgccGG
GGGGGCTGCTGCGGAATTTGACGCCGTTAGTgtag

Synonyms

Publications