EWM29061.1, cds1626 (CDS) Nannochloropsis gaditana

Overview
NameEWM29061.1
Unique Namecds1626
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1102800..1104134 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29061.1
ProductCyclin C/H/T/L
Orig transcript idgnl|cribi|Naga_100024g2.4319.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1102800..1104134 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0007049cell cycle
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006464cellular protein modification process
GO:0006355regulation of transcription, DNA-templated
GO:0000079regulation of cyclin-dependent protein serine/threonine kinase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005575cellular_component
Vocabulary: Molecular Function
TermDefinition
GO:0030234enzyme regulator activity
GO:0005515protein binding
GO:0019901protein kinase binding
Vocabulary: INTERPRO
TermDefinition
IPR015429Cyclin_C/H/T/L
IPR006671Cyclin_N
IPR013763Cyclin-like
Homology
BLAST of EWM29061.1 vs. NCBI_GenBank
Match: gi|585111580|gb|EWM29061.1| (Cyclin C/H/T/L [Nannochloropsis gaditana])

HSP 1 Score: 907.131 bits (2343), Expect = 0.000e+0
Identity = 444/444 (100.00%), Postives = 444/444 (100.00%), Query Frame = 0
Query:    1 MSPFHAPSTRTIMPSSGYSGSFARDSHREHERGHRHRERDRDRHDRDGGSGRKRARERSRERIDTHPRDNSSVRSCLSPRRRSNGSEGDGRGRPATHVSRVSSSPLPSRGGAHAKRSPSRPPRNEQPPPLPPDTHLAFCVSSCAFIVEMGKALHLGKVATHTALVFFHRFFKHQSFRSHDRLLVAAACIYLAAKVEERNNVKLSLIVVAYLKRLGVLPPEVDAQDYNRNAVAREEVPTWKSRVITYERCLLYTMAFDLTVVHPFKALQDLMKTVRDVMAEEGKKTGLSGGPGKALASLPFPSASSSPAASALDHRTVFAQACKFLNDSFFLPALIEVDASYSAALALYLTLVLYDIKPPAGKGSWLEVWHIQDEPRFLRDCLLAVKTYGEESGKRLNLEPVPDPAAVEVPPAEDALGRDMATLYGGSKAGGMPGGLLRNLTPLV 444
            MSPFHAPSTRTIMPSSGYSGSFARDSHREHERGHRHRERDRDRHDRDGGSGRKRARERSRERIDTHPRDNSSVRSCLSPRRRSNGSEGDGRGRPATHVSRVSSSPLPSRGGAHAKRSPSRPPRNEQPPPLPPDTHLAFCVSSCAFIVEMGKALHLGKVATHTALVFFHRFFKHQSFRSHDRLLVAAACIYLAAKVEERNNVKLSLIVVAYLKRLGVLPPEVDAQDYNRNAVAREEVPTWKSRVITYERCLLYTMAFDLTVVHPFKALQDLMKTVRDVMAEEGKKTGLSGGPGKALASLPFPSASSSPAASALDHRTVFAQACKFLNDSFFLPALIEVDASYSAALALYLTLVLYDIKPPAGKGSWLEVWHIQDEPRFLRDCLLAVKTYGEESGKRLNLEPVPDPAAVEVPPAEDALGRDMATLYGGSKAGGMPGGLLRNLTPLV
Sbjct:    1 MSPFHAPSTRTIMPSSGYSGSFARDSHREHERGHRHRERDRDRHDRDGGSGRKRARERSRERIDTHPRDNSSVRSCLSPRRRSNGSEGDGRGRPATHVSRVSSSPLPSRGGAHAKRSPSRPPRNEQPPPLPPDTHLAFCVSSCAFIVEMGKALHLGKVATHTALVFFHRFFKHQSFRSHDRLLVAAACIYLAAKVEERNNVKLSLIVVAYLKRLGVLPPEVDAQDYNRNAVAREEVPTWKSRVITYERCLLYTMAFDLTVVHPFKALQDLMKTVRDVMAEEGKKTGLSGGPGKALASLPFPSASSSPAASALDHRTVFAQACKFLNDSFFLPALIEVDASYSAALALYLTLVLYDIKPPAGKGSWLEVWHIQDEPRFLRDCLLAVKTYGEESGKRLNLEPVPDPAAVEVPPAEDALGRDMATLYGGSKAGGMPGGLLRNLTPLV 444          
BLAST of EWM29061.1 vs. NCBI_GenBank
Match: gi|553191573|ref|XP_005855403.1| (hypothetical protein NGA_2054200, partial [Nannochloropsis gaditana CCMP526] >gi|422293657|gb|EKU20957.1| hypothetical protein NGA_2054200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 290.812 bits (743), Expect = 8.457e-95
Identity = 142/144 (98.61%), Postives = 142/144 (98.61%), Query Frame = 0
Query:  173 HQSFRSHDRLLVAAACIYLAAKVEERNNVKLSLIVVAYLKRLGVLPPEVDAQDYNRNAVAREEVPTWKSRVITYERCLLYTMAFDLTVVHPFKALQDLMKTVRDVMAEEGKKTGLSGGPGKALASLPFPSASSSPAASALDHRT 316
            HQSFRSHDRLLVAAACIYLAAKVEERNNVKLSLIVVAYLKRLGVLPPEVDAQDYNRNAVAREEVPTWKSRVITYERCLLYTMAFDLTVVHPFKALQDLMKTVRDVMAEEGKKTGLSGGPGKALASLPFPSASSS A SALDHRT
Sbjct:    1 HQSFRSHDRLLVAAACIYLAAKVEERNNVKLSLIVVAYLKRLGVLPPEVDAQDYNRNAVAREEVPTWKSRVITYERCLLYTMAFDLTVVHPFKALQDLMKTVRDVMAEEGKKTGLSGGPGKALASLPFPSASSSSAVSALDHRT 144          
BLAST of EWM29061.1 vs. NCBI_GenBank
Match: gi|1210523620|dbj|GAX17580.1| (cyclin T [Fistulifera solaris])

HSP 1 Score: 98.5969 bits (244), Expect = 1.613e-19
Identity = 74/235 (31.49%), Postives = 105/235 (44.68%), Query Frame = 0
Query:  142 SCAFIVEMGKALHLGKVATHTALVFFHRFFKHQSFRSHDRLLVAAACIYLAAKVEERNNVKLSLIVVAYLKRL----------GVLPPEVDAQDYNRNAVAREEVPTWKSRVITYERCLLYTMAFDLTVVHPFKALQDLMKTVRDVMAEEGKKTGLSGGPGKALASLPFPSASSSPAASALDHRTVFAQ-ACKFLNDSFFLPALIEVDASYSAALALYLTLVLYDIKPPAGKGSW 365
            +C FI E G+ L L +VA  TA+VFFHRF+   SF  HDR  VA AC+ LAAK EE  + K  ++V+   ++L           V PP++D +         EE    K RV+  ER +L+T+ F+L++ HP+K L + +K +      +GKK                P   SSP            Q A  F NDS      ++ D    A   +YL      + P      W
Sbjct:   30 TCRFIEESGRILKLPRVAIATAMVFFHRFYAKHSFAQHDRFEVAVACLLLAAKTEE--SPKKLVVVLEECQKLKWRGMQAGSASVKPPDLDPKG--------EEFSKLKERVLLLERVILHTIGFELSIDHPYKFLVEQIKQLV-----QGKKLIYQNNHT--------PVGLSSPQQQQQHMMNEMVQLAMNFANDSMHTSLCLQFDPKKIALTCVYLAAQFGHLMPANESDDW 241          
BLAST of EWM29061.1 vs. NCBI_GenBank
Match: gi|1210523382|dbj|GAX18019.1| (cyclin T [Fistulifera solaris])

HSP 1 Score: 97.4413 bits (241), Expect = 4.312e-19
Identity = 74/235 (31.49%), Postives = 105/235 (44.68%), Query Frame = 0
Query:  142 SCAFIVEMGKALHLGKVATHTALVFFHRFFKHQSFRSHDRLLVAAACIYLAAKVEERNNVKLSLIVVAYLKRL----------GVLPPEVDAQDYNRNAVAREEVPTWKSRVITYERCLLYTMAFDLTVVHPFKALQDLMKTVRDVMAEEGKKTGLSGGPGKALASLPFPSASSSPAASALDHRTVFAQ-ACKFLNDSFFLPALIEVDASYSAALALYLTLVLYDIKPPAGKGSW 365
            +C FI E G+ L L +VA  TA+VFFHRF+   SF  HDR  VA AC+ LAAK EE  + K  ++V+   ++L           V PP++D +         EE    K RV+  ER +L+T+ F+L++ HP+K L + +K +      +GKK                P   SSP            Q A  F NDS      ++ D    A   +YL      + P      W
Sbjct:   30 TCRFIEEAGRILKLPRVAIATAMVFFHRFYAKHSFAQHDRFEVAVACLLLAAKTEE--SPKKLVVVLEECQKLKWRGMQAGSATVKPPDLDPKG--------EEFSKLKERVLLLERVILHTIGFELSIDHPYKFLVEQIKQLV-----QGKKLIYQNNHT--------PVGLSSPQQQQQHMMNEMVQLAMNFANDSMHTSLCLQFDPKKIAFTCVYLAAQFGHLVPTNESDDW 241          
BLAST of EWM29061.1 vs. NCBI_GenBank
Match: gi|219129960|ref|XP_002185144.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403323|gb|EEC43276.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 90.8929 bits (224), Expect = 1.302e-17
Identity = 54/126 (42.86%), Postives = 72/126 (57.14%), Query Frame = 0
Query:  142 SCAFIVEMGKALHLGKVATHTALVFFHRFFKHQSFRSHDRLLVAAACIYLAAKVEERNNVKLSLIVVAYLKRLGVLPPEVDAQDYNRNAVAREEVPTWKSRVITYERCLLYTMAFDLTVVHPFKAL 267
            +C FI E G+ L L +VA  TA+VFFHRF+   SF+ HDR  VA ACI LAAK EE    KL+  V+    +L V           R   A EE    K R++  ER +L+T+ F+L++ HP+K L
Sbjct:   19 TCRFIEEAGRVLKLPRVAVSTAMVFFHRFYAKHSFQDHDRFEVAVACIVLAAKTEESPK-KLT-TVIDECHKLKV-----------RGMQAGEEFIKLKERILLLERVILHTIGFELSIDHPYKFL 131          
BLAST of EWM29061.1 vs. NCBI_GenBank
Match: gi|923128819|ref|XP_013757876.1| (cyclin [Thecamonas trahens ATCC 50062] >gi|906556213|gb|KNC49456.1| cyclin [Thecamonas trahens ATCC 50062])

HSP 1 Score: 90.5077 bits (223), Expect = 1.167e-16
Identity = 51/138 (36.96%), Postives = 79/138 (57.25%), Query Frame = 0
Query:  142 SCAFIVEMGKALHLGKVATHTALVFFHRFFKHQSFRSHDRLLVAAACIYLAAKVEERNNVKLSLIVVAYLKRLGVLPPEVDAQDYNRNAVAREEVPTWKSRVITYERCLLYTMAFDLTVVHPFKALQDLMKTVRDVMA 279
             C  I+ +G  L++  +A  TA++FFHRFF  +SF+ HD  LVA  C++LA KVEE +    +++ +A+ +R            Y   A    ++   K +++ +ER +L T+AFDLTVVHP+K   DLM    D+ A
Sbjct:   36 QCMAILHLGAKLNVPTLAKATAVLFFHRFFLRRSFKKHDAWLVAVTCLFLATKVEESSKKLRNVVDMAFEQR------------YPGEARDDSKLFQLKEQILIHERKVLQTLAFDLTVVHPYK---DLMPMASDIHA 158          
BLAST of EWM29061.1 vs. NCBI_GenBank
Match: gi|695013635|ref|XP_009393608.1| (PREDICTED: cyclin-T1-2 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 91.6633 bits (226), Expect = 1.986e-16
Identity = 76/278 (27.34%), Postives = 125/278 (44.96%), Query Frame = 0
Query:  143 CAFIVEMGKALHLGKVATHTALVFFHRFFKHQSFRSHDRLLVAAACIYLAAKVEERNNVKLSLIVVAYLKRLGVLPPEVDAQDYNRNAVAREEVPTWKSRVITYERCLLYTMAFDLTVVHPFKALQDLMKTVRDVMAEEGKKTGLSGGPGKALASLPFPSASSSPAASALDHRTVFAQACKFLNDSFFLPALIEVDASYSAALALYLTLVLYDIKPPAGKGSWLEVWHIQD-EPRFLRDCLLAVK---TYGEESGKRLNLEPVPDPAAVEVPPAEDAL 416
            C+FI ++G  L L +V   TA+++ HRF+ HQS   +D   VA  C++LA+KVEE       ++VVAY       P  +      R    ++     K+ ++  ER LL T+ FD TV+HP+K L D +           KK G++                          + V   A  ++ND  +    ++  + Y AA +L+L   L+++K P+ +G ++  WH  D  P+ L   +  +K    Y          +PVP  A  EV  + D++
Sbjct:   63 CSFIRDIGIRLGLPQVTIATAIMYCHRFYLHQSHVKNDWQTVATVCMFLASKVEETPCGLDKIVVVAYETMYKRDPTAI------RKIRQKDTFEKQKALILIGERLLLSTIRFDFTVLHPYKPLLDAL-----------KKLGIT-------------------------QKEVRQVAWNYVNDWLWTTLCLQYKSHYIAAGSLFLAAKLHNLKLPSERGGYV-WWHEFDVNPQQLEVVIQQMKQLLVYNRRCSVTPFEKPVPIAANKEVSSSPDSV 297          
BLAST of EWM29061.1 vs. NCBI_GenBank
Match: gi|470249171|ref|XP_004358180.1| (cyclin [Dictyostelium fasciculatum] >gi|328871464|gb|EGG19834.1| cyclin [Dictyostelium fasciculatum])

HSP 1 Score: 92.0485 bits (227), Expect = 2.660e-16
Identity = 61/186 (32.80%), Postives = 89/186 (47.85%), Query Frame = 0
Query:  141 SSCAFIVEMGKALHLGKVATHTALVFFHRFFKHQSFRSHDRLLVAAACIYLAAKVEERNNVKLSLIVVAYLKRLGVLPPEVDAQDYNRNAVAREEVPTWKSRVITYERCLLYTMAFDLTVVHPFKALQDLMKTVRDVMAEEGKKTGLSGGPGKALASLPFPSASSSPAASALDHRTVFAQACKFLN 326
            +SCAFI ++G  L L ++   TA  +FHRF+     R +DR LVA  C++LA KVEE    KL  +   Y K          A++  +    + E+ +  +++I +E  LL T+AF+LTV HP+K L + MK ++                 +    L FP    S AA  L        A KFLN
Sbjct:  105 ASCAFIQDIGITLKLSQLIIATATTYFHRFYIRHQLRDYDRFLVATTCLFLATKVEESPR-KLVDVASIYYK----------AKNKKQTNPDQGEIQSIINKIIQHEHLLLTTIAFELTVDHPYKFLLEYMKMIQGSKRLCQVAWNFVNDSLRTNLCLQFPPQLISYAAVYL--------ATKFLN 271          
BLAST of EWM29061.1 vs. NCBI_GenBank
Match: gi|1013939282|gb|KYQ92971.1| (putative K-type cyclin [Dictyostelium lacteum])

HSP 1 Score: 89.3521 bits (220), Expect = 4.729e-16
Identity = 47/136 (34.56%), Postives = 76/136 (55.88%), Query Frame = 0
Query:  141 SSCAFIVEMGKALHLGKVATHTALVFFHRFFKHQSFRSHDRLLVAAACIYLAAKVEERNNVKLSLIVVAYLKRLGVLPP--EVDAQDYNRNAVAREEVPTWKSRVITYERCLLYTMAFDLTVVHPFKALQDLMKTV 274
            SS  FI E+G  L L ++   TA+ +FHRFF     + HDR +V+ AC++LA KVEE +   + +I ++Y  +  +  P  E+D          + E+   K +++  E  +L T+AFDL V HP+K L + +K +
Sbjct:   32 SSATFIQEVGIKLKLPQLTIATAIAYFHRFFIRHQLKDHDRYIVSTACLFLAGKVEEAHRTLVDVINISYRIKNKITTPGYEMD----------KNELDDIKRKILVSEHQILTTIAFDLAVEHPYKCLLEYIKHI 157          
BLAST of EWM29061.1 vs. NCBI_GenBank
Match: gi|1179535091|ref|XP_020688452.1| (cyclin-T1-3-like isoform X1 [Dendrobium catenatum])

HSP 1 Score: 89.7373 bits (221), Expect = 1.322e-15
Identity = 68/243 (27.98%), Postives = 110/243 (45.27%), Query Frame = 0
Query:  141 SSCAFIVEMGKALHLGKVATHTALVFFHRFFKHQSFRSHDRLLVAAACIYLAAKVEERNNVKLSLIVVAY--LKRLGVLPPEVDAQDYNRNAVAREEVPTWKSRVITYERCLLYTMAFDLTVVHPFKALQDLMKTVRDVMAEEGKKTGLSGGPGKALASLPFPSASSSPAASALDHRTVFAQACKFLNDSFFLPALIEVDASYSAALALYLTLVLYDIKPPA-GKGSWLEVWHIQDEPRFLRD 380
            S C F+ E+G  L + +V   TA++F HRFF  QS   +DR+ +A  C++LA KVEE       +I+V+Y  + + G       AQ+     V  ++    K  ++  ER +L T+ FDL V HP+++L D ++                           F  A SS A  A +          F+ND       ++    + AA A++L      +K P+ G+ +W +V+ +   PR L D
Sbjct:   63 SYCTFLRELGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRMTIATVCMFLAGKVEETPRPLKDVILVSYEIIHKKGPFA----AQEIKHKEVYEQQ----KELILLGERLVLATLGFDLNVHHPYRSLVDAIRL--------------------------FNVAQSSLAKVAWN----------FVNDGLRTSLCLQFKPMHIAAGAMFLASKFIKVKLPSDGEKAWWQVFDVT--PRQLED 259          
The following BLAST results are available for this feature:
BLAST of EWM29061.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111580|gb|EWM29061.1|0.000e+0100.00Cyclin C/H/T/L [Nannochloropsis gaditana][more]
gi|553191573|ref|XP_005855403.1|8.457e-9598.61hypothetical protein NGA_2054200, partial [Nannoch... [more]
gi|1210523620|dbj|GAX17580.1|1.613e-1931.49cyclin T [Fistulifera solaris][more]
gi|1210523382|dbj|GAX18019.1|4.312e-1931.49cyclin T [Fistulifera solaris][more]
gi|219129960|ref|XP_002185144.1|1.302e-1742.86predicted protein, partial [Phaeodactylum tricornu... [more]
gi|923128819|ref|XP_013757876.1|1.167e-1636.96cyclin [Thecamonas trahens ATCC 50062] >gi|9065562... [more]
gi|695013635|ref|XP_009393608.1|1.986e-1627.34PREDICTED: cyclin-T1-2 [Musa acuminata subsp. mala... [more]
gi|470249171|ref|XP_004358180.1|2.660e-1632.80cyclin [Dictyostelium fasciculatum] >gi|328871464|... [more]
gi|1013939282|gb|KYQ92971.1|4.729e-1634.56putative K-type cyclin [Dictyostelium lacteum][more]
gi|1179535091|ref|XP_020688452.1|1.322e-1527.98cyclin-T1-3-like isoform X1 [Dendrobium catenatum][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1630rna1630Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications