EWM29061.1, cds1626 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29061.1 vs. NCBI_GenBank
Match: gi|585111580|gb|EWM29061.1| (Cyclin C/H/T/L [Nannochloropsis gaditana]) HSP 1 Score: 907.131 bits (2343), Expect = 0.000e+0 Identity = 444/444 (100.00%), Postives = 444/444 (100.00%), Query Frame = 0
Query: 1 MSPFHAPSTRTIMPSSGYSGSFARDSHREHERGHRHRERDRDRHDRDGGSGRKRARERSRERIDTHPRDNSSVRSCLSPRRRSNGSEGDGRGRPATHVSRVSSSPLPSRGGAHAKRSPSRPPRNEQPPPLPPDTHLAFCVSSCAFIVEMGKALHLGKVATHTALVFFHRFFKHQSFRSHDRLLVAAACIYLAAKVEERNNVKLSLIVVAYLKRLGVLPPEVDAQDYNRNAVAREEVPTWKSRVITYERCLLYTMAFDLTVVHPFKALQDLMKTVRDVMAEEGKKTGLSGGPGKALASLPFPSASSSPAASALDHRTVFAQACKFLNDSFFLPALIEVDASYSAALALYLTLVLYDIKPPAGKGSWLEVWHIQDEPRFLRDCLLAVKTYGEESGKRLNLEPVPDPAAVEVPPAEDALGRDMATLYGGSKAGGMPGGLLRNLTPLV 444
MSPFHAPSTRTIMPSSGYSGSFARDSHREHERGHRHRERDRDRHDRDGGSGRKRARERSRERIDTHPRDNSSVRSCLSPRRRSNGSEGDGRGRPATHVSRVSSSPLPSRGGAHAKRSPSRPPRNEQPPPLPPDTHLAFCVSSCAFIVEMGKALHLGKVATHTALVFFHRFFKHQSFRSHDRLLVAAACIYLAAKVEERNNVKLSLIVVAYLKRLGVLPPEVDAQDYNRNAVAREEVPTWKSRVITYERCLLYTMAFDLTVVHPFKALQDLMKTVRDVMAEEGKKTGLSGGPGKALASLPFPSASSSPAASALDHRTVFAQACKFLNDSFFLPALIEVDASYSAALALYLTLVLYDIKPPAGKGSWLEVWHIQDEPRFLRDCLLAVKTYGEESGKRLNLEPVPDPAAVEVPPAEDALGRDMATLYGGSKAGGMPGGLLRNLTPLV
Sbjct: 1 MSPFHAPSTRTIMPSSGYSGSFARDSHREHERGHRHRERDRDRHDRDGGSGRKRARERSRERIDTHPRDNSSVRSCLSPRRRSNGSEGDGRGRPATHVSRVSSSPLPSRGGAHAKRSPSRPPRNEQPPPLPPDTHLAFCVSSCAFIVEMGKALHLGKVATHTALVFFHRFFKHQSFRSHDRLLVAAACIYLAAKVEERNNVKLSLIVVAYLKRLGVLPPEVDAQDYNRNAVAREEVPTWKSRVITYERCLLYTMAFDLTVVHPFKALQDLMKTVRDVMAEEGKKTGLSGGPGKALASLPFPSASSSPAASALDHRTVFAQACKFLNDSFFLPALIEVDASYSAALALYLTLVLYDIKPPAGKGSWLEVWHIQDEPRFLRDCLLAVKTYGEESGKRLNLEPVPDPAAVEVPPAEDALGRDMATLYGGSKAGGMPGGLLRNLTPLV 444
BLAST of EWM29061.1 vs. NCBI_GenBank
Match: gi|553191573|ref|XP_005855403.1| (hypothetical protein NGA_2054200, partial [Nannochloropsis gaditana CCMP526] >gi|422293657|gb|EKU20957.1| hypothetical protein NGA_2054200, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 290.812 bits (743), Expect = 8.457e-95 Identity = 142/144 (98.61%), Postives = 142/144 (98.61%), Query Frame = 0
Query: 173 HQSFRSHDRLLVAAACIYLAAKVEERNNVKLSLIVVAYLKRLGVLPPEVDAQDYNRNAVAREEVPTWKSRVITYERCLLYTMAFDLTVVHPFKALQDLMKTVRDVMAEEGKKTGLSGGPGKALASLPFPSASSSPAASALDHRT 316
HQSFRSHDRLLVAAACIYLAAKVEERNNVKLSLIVVAYLKRLGVLPPEVDAQDYNRNAVAREEVPTWKSRVITYERCLLYTMAFDLTVVHPFKALQDLMKTVRDVMAEEGKKTGLSGGPGKALASLPFPSASSS A SALDHRT
Sbjct: 1 HQSFRSHDRLLVAAACIYLAAKVEERNNVKLSLIVVAYLKRLGVLPPEVDAQDYNRNAVAREEVPTWKSRVITYERCLLYTMAFDLTVVHPFKALQDLMKTVRDVMAEEGKKTGLSGGPGKALASLPFPSASSSSAVSALDHRT 144
BLAST of EWM29061.1 vs. NCBI_GenBank
Match: gi|1210523620|dbj|GAX17580.1| (cyclin T [Fistulifera solaris]) HSP 1 Score: 98.5969 bits (244), Expect = 1.613e-19 Identity = 74/235 (31.49%), Postives = 105/235 (44.68%), Query Frame = 0
Query: 142 SCAFIVEMGKALHLGKVATHTALVFFHRFFKHQSFRSHDRLLVAAACIYLAAKVEERNNVKLSLIVVAYLKRL----------GVLPPEVDAQDYNRNAVAREEVPTWKSRVITYERCLLYTMAFDLTVVHPFKALQDLMKTVRDVMAEEGKKTGLSGGPGKALASLPFPSASSSPAASALDHRTVFAQ-ACKFLNDSFFLPALIEVDASYSAALALYLTLVLYDIKPPAGKGSW 365
+C FI E G+ L L +VA TA+VFFHRF+ SF HDR VA AC+ LAAK EE + K ++V+ ++L V PP++D + EE K RV+ ER +L+T+ F+L++ HP+K L + +K + +GKK P SSP Q A F NDS ++ D A +YL + P W
Sbjct: 30 TCRFIEESGRILKLPRVAIATAMVFFHRFYAKHSFAQHDRFEVAVACLLLAAKTEE--SPKKLVVVLEECQKLKWRGMQAGSASVKPPDLDPKG--------EEFSKLKERVLLLERVILHTIGFELSIDHPYKFLVEQIKQLV-----QGKKLIYQNNHT--------PVGLSSPQQQQQHMMNEMVQLAMNFANDSMHTSLCLQFDPKKIALTCVYLAAQFGHLMPANESDDW 241
BLAST of EWM29061.1 vs. NCBI_GenBank
Match: gi|1210523382|dbj|GAX18019.1| (cyclin T [Fistulifera solaris]) HSP 1 Score: 97.4413 bits (241), Expect = 4.312e-19 Identity = 74/235 (31.49%), Postives = 105/235 (44.68%), Query Frame = 0
Query: 142 SCAFIVEMGKALHLGKVATHTALVFFHRFFKHQSFRSHDRLLVAAACIYLAAKVEERNNVKLSLIVVAYLKRL----------GVLPPEVDAQDYNRNAVAREEVPTWKSRVITYERCLLYTMAFDLTVVHPFKALQDLMKTVRDVMAEEGKKTGLSGGPGKALASLPFPSASSSPAASALDHRTVFAQ-ACKFLNDSFFLPALIEVDASYSAALALYLTLVLYDIKPPAGKGSW 365
+C FI E G+ L L +VA TA+VFFHRF+ SF HDR VA AC+ LAAK EE + K ++V+ ++L V PP++D + EE K RV+ ER +L+T+ F+L++ HP+K L + +K + +GKK P SSP Q A F NDS ++ D A +YL + P W
Sbjct: 30 TCRFIEEAGRILKLPRVAIATAMVFFHRFYAKHSFAQHDRFEVAVACLLLAAKTEE--SPKKLVVVLEECQKLKWRGMQAGSATVKPPDLDPKG--------EEFSKLKERVLLLERVILHTIGFELSIDHPYKFLVEQIKQLV-----QGKKLIYQNNHT--------PVGLSSPQQQQQHMMNEMVQLAMNFANDSMHTSLCLQFDPKKIAFTCVYLAAQFGHLVPTNESDDW 241
BLAST of EWM29061.1 vs. NCBI_GenBank
Match: gi|219129960|ref|XP_002185144.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403323|gb|EEC43276.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 90.8929 bits (224), Expect = 1.302e-17 Identity = 54/126 (42.86%), Postives = 72/126 (57.14%), Query Frame = 0
Query: 142 SCAFIVEMGKALHLGKVATHTALVFFHRFFKHQSFRSHDRLLVAAACIYLAAKVEERNNVKLSLIVVAYLKRLGVLPPEVDAQDYNRNAVAREEVPTWKSRVITYERCLLYTMAFDLTVVHPFKAL 267
+C FI E G+ L L +VA TA+VFFHRF+ SF+ HDR VA ACI LAAK EE KL+ V+ +L V R A EE K R++ ER +L+T+ F+L++ HP+K L
Sbjct: 19 TCRFIEEAGRVLKLPRVAVSTAMVFFHRFYAKHSFQDHDRFEVAVACIVLAAKTEESPK-KLT-TVIDECHKLKV-----------RGMQAGEEFIKLKERILLLERVILHTIGFELSIDHPYKFL 131
BLAST of EWM29061.1 vs. NCBI_GenBank
Match: gi|923128819|ref|XP_013757876.1| (cyclin [Thecamonas trahens ATCC 50062] >gi|906556213|gb|KNC49456.1| cyclin [Thecamonas trahens ATCC 50062]) HSP 1 Score: 90.5077 bits (223), Expect = 1.167e-16 Identity = 51/138 (36.96%), Postives = 79/138 (57.25%), Query Frame = 0
Query: 142 SCAFIVEMGKALHLGKVATHTALVFFHRFFKHQSFRSHDRLLVAAACIYLAAKVEERNNVKLSLIVVAYLKRLGVLPPEVDAQDYNRNAVAREEVPTWKSRVITYERCLLYTMAFDLTVVHPFKALQDLMKTVRDVMA 279
C I+ +G L++ +A TA++FFHRFF +SF+ HD LVA C++LA KVEE + +++ +A+ +R Y A ++ K +++ +ER +L T+AFDLTVVHP+K DLM D+ A
Sbjct: 36 QCMAILHLGAKLNVPTLAKATAVLFFHRFFLRRSFKKHDAWLVAVTCLFLATKVEESSKKLRNVVDMAFEQR------------YPGEARDDSKLFQLKEQILIHERKVLQTLAFDLTVVHPYK---DLMPMASDIHA 158
BLAST of EWM29061.1 vs. NCBI_GenBank
Match: gi|695013635|ref|XP_009393608.1| (PREDICTED: cyclin-T1-2 [Musa acuminata subsp. malaccensis]) HSP 1 Score: 91.6633 bits (226), Expect = 1.986e-16 Identity = 76/278 (27.34%), Postives = 125/278 (44.96%), Query Frame = 0
Query: 143 CAFIVEMGKALHLGKVATHTALVFFHRFFKHQSFRSHDRLLVAAACIYLAAKVEERNNVKLSLIVVAYLKRLGVLPPEVDAQDYNRNAVAREEVPTWKSRVITYERCLLYTMAFDLTVVHPFKALQDLMKTVRDVMAEEGKKTGLSGGPGKALASLPFPSASSSPAASALDHRTVFAQACKFLNDSFFLPALIEVDASYSAALALYLTLVLYDIKPPAGKGSWLEVWHIQD-EPRFLRDCLLAVK---TYGEESGKRLNLEPVPDPAAVEVPPAEDAL 416
C+FI ++G L L +V TA+++ HRF+ HQS +D VA C++LA+KVEE ++VVAY P + R ++ K+ ++ ER LL T+ FD TV+HP+K L D + KK G++ + V A ++ND + ++ + Y AA +L+L L+++K P+ +G ++ WH D P+ L + +K Y +PVP A EV + D++
Sbjct: 63 CSFIRDIGIRLGLPQVTIATAIMYCHRFYLHQSHVKNDWQTVATVCMFLASKVEETPCGLDKIVVVAYETMYKRDPTAI------RKIRQKDTFEKQKALILIGERLLLSTIRFDFTVLHPYKPLLDAL-----------KKLGIT-------------------------QKEVRQVAWNYVNDWLWTTLCLQYKSHYIAAGSLFLAAKLHNLKLPSERGGYV-WWHEFDVNPQQLEVVIQQMKQLLVYNRRCSVTPFEKPVPIAANKEVSSSPDSV 297
BLAST of EWM29061.1 vs. NCBI_GenBank
Match: gi|470249171|ref|XP_004358180.1| (cyclin [Dictyostelium fasciculatum] >gi|328871464|gb|EGG19834.1| cyclin [Dictyostelium fasciculatum]) HSP 1 Score: 92.0485 bits (227), Expect = 2.660e-16 Identity = 61/186 (32.80%), Postives = 89/186 (47.85%), Query Frame = 0
Query: 141 SSCAFIVEMGKALHLGKVATHTALVFFHRFFKHQSFRSHDRLLVAAACIYLAAKVEERNNVKLSLIVVAYLKRLGVLPPEVDAQDYNRNAVAREEVPTWKSRVITYERCLLYTMAFDLTVVHPFKALQDLMKTVRDVMAEEGKKTGLSGGPGKALASLPFPSASSSPAASALDHRTVFAQACKFLN 326
+SCAFI ++G L L ++ TA +FHRF+ R +DR LVA C++LA KVEE KL + Y K A++ + + E+ + +++I +E LL T+AF+LTV HP+K L + MK ++ + L FP S AA L A KFLN
Sbjct: 105 ASCAFIQDIGITLKLSQLIIATATTYFHRFYIRHQLRDYDRFLVATTCLFLATKVEESPR-KLVDVASIYYK----------AKNKKQTNPDQGEIQSIINKIIQHEHLLLTTIAFELTVDHPYKFLLEYMKMIQGSKRLCQVAWNFVNDSLRTNLCLQFPPQLISYAAVYL--------ATKFLN 271
BLAST of EWM29061.1 vs. NCBI_GenBank
Match: gi|1013939282|gb|KYQ92971.1| (putative K-type cyclin [Dictyostelium lacteum]) HSP 1 Score: 89.3521 bits (220), Expect = 4.729e-16 Identity = 47/136 (34.56%), Postives = 76/136 (55.88%), Query Frame = 0
Query: 141 SSCAFIVEMGKALHLGKVATHTALVFFHRFFKHQSFRSHDRLLVAAACIYLAAKVEERNNVKLSLIVVAYLKRLGVLPP--EVDAQDYNRNAVAREEVPTWKSRVITYERCLLYTMAFDLTVVHPFKALQDLMKTV 274
SS FI E+G L L ++ TA+ +FHRFF + HDR +V+ AC++LA KVEE + + +I ++Y + + P E+D + E+ K +++ E +L T+AFDL V HP+K L + +K +
Sbjct: 32 SSATFIQEVGIKLKLPQLTIATAIAYFHRFFIRHQLKDHDRYIVSTACLFLAGKVEEAHRTLVDVINISYRIKNKITTPGYEMD----------KNELDDIKRKILVSEHQILTTIAFDLAVEHPYKCLLEYIKHI 157
BLAST of EWM29061.1 vs. NCBI_GenBank
Match: gi|1179535091|ref|XP_020688452.1| (cyclin-T1-3-like isoform X1 [Dendrobium catenatum]) HSP 1 Score: 89.7373 bits (221), Expect = 1.322e-15 Identity = 68/243 (27.98%), Postives = 110/243 (45.27%), Query Frame = 0
Query: 141 SSCAFIVEMGKALHLGKVATHTALVFFHRFFKHQSFRSHDRLLVAAACIYLAAKVEERNNVKLSLIVVAY--LKRLGVLPPEVDAQDYNRNAVAREEVPTWKSRVITYERCLLYTMAFDLTVVHPFKALQDLMKTVRDVMAEEGKKTGLSGGPGKALASLPFPSASSSPAASALDHRTVFAQACKFLNDSFFLPALIEVDASYSAALALYLTLVLYDIKPPA-GKGSWLEVWHIQDEPRFLRD 380
S C F+ E+G L + +V TA++F HRFF QS +DR+ +A C++LA KVEE +I+V+Y + + G AQ+ V ++ K ++ ER +L T+ FDL V HP+++L D ++ F A SS A A + F+ND ++ + AA A++L +K P+ G+ +W +V+ + PR L D
Sbjct: 63 SYCTFLRELGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRMTIATVCMFLAGKVEETPRPLKDVILVSYEIIHKKGPFA----AQEIKHKEVYEQQ----KELILLGERLVLATLGFDLNVHHPYRSLVDAIRL--------------------------FNVAQSSLAKVAWN----------FVNDGLRTSLCLQFKPMHIAAGAMFLASKFIKVKLPSDGEKAWWQVFDVT--PRQLED 259 The following BLAST results are available for this feature:
BLAST of EWM29061.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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