rna163, rna163 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna163
Unique Name	rna163
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2022
Alignment location	CM002455.1:429020..431430 +

Link to JBrowse

Properties


Property Name	Value
Product	serine arginine-rich splicing factor 4
Orig transcript id	gnl\|cribi\|Naga_100013g57.9824.mrna
Orig protein id	gnl\|cribi\|Naga_100013g57.9824
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:429020..431430 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100013g57	gene155	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna163	rna163-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30536.1	cds163	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:429020..431430+
coding sequence from alignment at CM002455.1:429020..431430+

mRNA sequence

>rna163 ID=rna163|Name=rna163|organism=Nannochloropsis gaditana|type=mRNA|length=2022bp
CAGAGCGCTTTCCTCATGACACTCGTAAACACCATTCATTTTGTAGGGAT
TTACTGTCTTTCTGATGAGTTAAATCGCAGAACGTCACTGAAATTATCGG
CTCGTAACCCACTTTCGGTAAAGGTAGACGAAGCAAGTGGGCCTGGGTCA
CAGTAGAAGGCTGGGAAGTCGCTTGAATCCGCACCACCAGCAAGAATCTC
AACCAATTGAAGCAGGCTTAGCTTTCTAATATCCGTCATCCGCTGGTGTC
ATCGCTCTCAGGCTCAAAGCACTCACATCGTTACAGTACCATCGATACTA
TTGGAAGCACTAGAAGTATGGCATGGGCGTGGAAAACATCAGCCATAGAA
AACACTCGCTTTGAAATCAAATATACCCCATACTTTTCTTCAATTGGCCC
TGTCTCTACTGCCTGTCCCACCTATGATCCCCGGGCTACCCGTATCTGGG
TGAAGATCGAGTGCGACTACACAAGACGTATCCTCGTCAAAGCCATTACC
AAGCGGCAGTCCCGTTTATGTGGTGTTAAAAATCAAAAGGATGCCTCCAT
ATTATGGGCAGACTACGAGGATCTGGATTTCGACCGAGTCCTGGCAAGTG
GAGGTAAAATTAAAGCCAACTCGTACTTGGTCCGGAAAGGGCTAGCGCGG
AAAGCTCAATTAGCCTATCATCTACGCAAATACATGGCGAAAAGACCAAG
GTCAATACTGCATGGAGCAATCCCTGAGACCTTAGTCATCGAAACTTGGG
AAGCGTTTGAGGAAGGGATGAGCTTTGGGGCGTTGGGTGCCACATTTGAC
GGAAATCTCACGGCGACACTCTCATTACGGGATCGATTGGACTGGTGCCT
TCGGGACGCGAGAGAAAGGATTGCACGGTCTCCTGGCTCCACCTGGATTC
TTAAACCAAGCGTCACTAATAAAGGCGCAGAAATAACAGTCCTAAAGGAC
TACCAAAGCATGAGGGACATTGTACGGACATGGCCTGACGTGCGTGAGTG
GGTTTTGCAGGCATACATAGTCACTCCTCTTCTATACCGTCGCAGAAAAT
TCCATCTGAGGTGTTACGTTTTGGCAGTAGGAAATCTTTCTGTATACGTT
TGGCGGCAAATTTTATTGCTCACCTCGACTGTGGAGTACGATTCAGAGGA
TCTTTGCAATCAGCTAGCGCACGTAACCAACACCGCCCGACAAGTGGAAG
ACGGGGAGATGTGCCCAGCGGTGGAGGATTGTGTTTTCTCATTGGATGAC
TTGGTTGATGATTTGAGAACAAAGCAGCATTTAAGTTTGGAGCAGGCGGG
GGGAATTGTCAGCGATATCCGCGGGGGGATTGAAAATGTGACGGGAGAGC
TTTTCAAGGCTTTGCACGGGGAGCGGACAGTCTTTGCTCCAGTTCCTCAG
TGCTTTGAGCTCCTGGGTCTTGACTTTTTGGTGTCTATGGACCACACAAG
TTCAAATGAATCAGGTCTCCCAGTATTGACACCACAGGTGCATCTACTAG
AGGTGAATCCAGGACCGGATTTCAAGCAAACAGGGCCGCGTCTGAAGTCG
GTGATAGAGGGGCTGGTGGAGGCTACACTGGACGTGGCCGTCCTTGAAGA
CGGAGAAATCAGCAAAGATTTGGCGTTGGTATACCAATCCTTGCACCCAG
AGAATGGGGAGGTCGGGATGCGCTTATTAGAGGGGTGACAGAGTGAAAGC
TAACACATTTCTTTCGACATCGAGCAGTGTCTCCACATCTTCGCACGCTA
TGCACCCAATGATTTTTACACTGCGTAAAGTTAACAGAGTGTTGCTGTAC
ACAAGTTCCTGCATCCGTCACTACTGGCACGAACTTTGACCCCCAGATCC
CCCCTTTACGATGTATGCCCTCACTACTCTGTAATAAGCGCCAAATATTA
TCTGCGCCTCAATCCATGCCATCTGCTTCTTCTGGTCGCACATTTGAATA
CCGTTCGACACCAAAAGAATTGATGTCGAGATTTCTGATCCCAATGGTTC
CCAGCAGCTTCTCGGGCAACTC

protein sequence of rna163

>rna163-protein ID=rna163-protein|Name=rna163|organism=Nannochloropsis gaditana|type=polypeptide|length=411bp
MPGTRLYVGNLTPSVTGDELREIFSGYGPIDRVDMKKDGYAFVEFVRGRE
GEDAVVAAAQGMNKKELHGLILTVEEAKGPKREGPRPEMQRSDFRIRVEG
MPREATWQDLKDFARGKKGLAPLYTEVLRGTPGVGIIEYHRREDMIEALS
LIHNTELRGVVVQVYEDTPMSRDRGPERRPGFSRSPPGDYRRGDNRFPPR
DRPRSRSRERYPPSYMPPDPYAYRRGRSRSRSPPPGRYPPPYPEDPYRRG
GPLPPPPQPAFYDNYDYRRDSRARSRSPPPRYAPPYESRYVSPPSSGGRP
RDYSPRRPRAAADDDYRYAPPPPRYAPPGPYDGGREGSAGGFAGGRFPAD
GRFEEPFDGGRHPPGPPASSRPPAHAPMPDMYMPGPRPPGLGGGEAGGSR
DPRRREWGGGR

mRNA from alignment at CM002455.1:429020..431430+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna163 ID=rna163|Name=rna163|organism=Nannochloropsis gaditana|type=mRNA|length=2411bp|location=Sequence derived from alignment at CM002455.1:429020..431430+ (Nannochloropsis gaditana)
TGGTGGCCAGTGCATCGTTTCACAACGTTTTCTGTCAAGCTTCACACGGT
CCTTGGTCATACGGTCCTACAGGTTGCGGACAAGGGGTGTAGGTGGTACG
GAAGTTTGAACTGGATTCAGTGGGAACAAAGCATTGAGGTAAGTCAATTG
CCAACTCGCCCTTAAAACAAGGAAGTAACAAATATATCATGCCTGGCACG
CGCCTCTACGTGGGAAACTTGACGCCTTCCGTCACGGGAGATGAGTTGAG
GGAGATTTTCAGCGGCTACGGGCCAATTGATCGCGTGGACATGAAGAAAG
ATGGGTACGCCTTCGTAGAATTCGTGCgcggcagagaaggagaggatgcc
gTTGTTGCGGCCGCCCAAGGCATGAACAAAAAGGAACTGCACGGTTTGAT
ATTGACAGTAGAAGAAGCGAAGGGCCCGAAACGAGAAGGTCCTCGTCCTG
AGATGCAGCGGTCTGATTTTCGGATTCGAGTGGAAGGTATGCCGCGTGAA
GCCACCTGGCAAGATTTGAAGGACTTcgcaagagggaagaaaggattgGC
TCCTTTATACACAGAGGTACTCCGTGGCACTCCGGGCGTAGGGATTATCG
AGTATCACCGCCGCGAGGATATGATTGAAGCTTTGAGCCTCATTCACAAC
ACGGAACTGCGTGGCGTGGTGGTCCAAGTGTACGAGGTGAGTGGAGAGTA
TTGTGATGGACGGCCTGGCAACTGTGAAGGTTGAAAGCCACACAAGGGGA
CATTATGTACACGTCTGAAAAGAAACCGCATCCACCTTCCACAGGACACC
CCGATGAGCCGAGACCGCGGGCCTGAGAGGCGACCCGGGTTCAGCCGAAG
CCCCCCGGGGGATTACCGGCGGGGCGACAACCGTTTTCCGCCTCGCGATC
GTCCACGGTCCAGGTCGCGAGAGCGCTACCCGCCCAGCTACATGCCCCCA
GACCCTTACGCTTACCGTCGAGGGCGCTCTCGGTCTCGcagccccccgcc
cggtcGTTACCCACCTCCCTACCCCGAGGACCCTTATCGCCGCggcggcc
ctctcccccctcctcctcaaccggCTTTCTACGACAACTACGACTACCGT
CGTGATTCTCGCgctcgctcccgctccccccctcctcgctacGCTCCTCC
GTATGAATCCCGCTAcgtctcgcccccctcctccggcggcCGGCCCCGGG
ACTACAGTCCCCGTCGTCCAAGGGCCGCGGCAGATGACGACTACCGttac
gccccccccccccctcgctacGCGCCACCAGGACCATACGACGGTGGACG
GGAGGGATCAGCCGGTGGGtttgcgggagggaggttcccCGCGGACGGAC
GCTTCGAGGAACCCTTTGACGGCGGGCGCCACCCACCCGGACCACCTGCG
TCGTCTCGCCCCCCTGCGCACGCGCCCATGCCAGACATGTACATGCCGGG
GCCCCGTCCCCCGGgcctgggtggaggggaggctggtggaagcagggatc
cccggcggagggaatggggcgggggccggtgAGGCTCCCATGGATGGGTt
tgggagggcgtgcagATTCGCAACATTGTCCGGTCCTGAAGAGGGATGAT
GGAGCAGATGAAAGCTTGATGATCACACAGAGGCCTAGTCGGGCTCAGAT
TCCGGAGGCGTGCGCGTGTCAAGGAGGCTTTGAGGGGTTGAAAGGATGTG
TCGAAGTGCTCTGAGGACTCCTtgagaagaaggcgatgtAGAACGCTGTG
CCATCGATCTACCGGGCATTCCTCGAGGGCTTGACATGGACGGTGTCATG
CCTGGGGTGGTGCAGAGGACCGCGAAGAGACTAGGTTTAAGGAATAATTT
GAGAGGAAATGAAGGCGCCCCTTGTCAGGCTCGAAGCGCATCGGTCATCT
TTTTTTTCGCCTCCggacctccttccctcctttctcttgctcaGCTCCCT
GTGCCAGCGAACCTGACAGTACAATGTATCATCACACCCTCTCTCACTGA
GCTCGACGTTCTCCTCGACAGGATTGGGTGAGGGTGGATGTCGCCGCAAC
GAGCCTCGGGACTACAGAAAGAAGTTCTCAGCCTTTACCGACGAGTATTG
CGCGCTGCCAGAGTCAAAGACGCGGGCAAAATAGATGGAGGAACGTACAC
ATTGGCTCGTACGCGTTTCCGAGAAGATGCTACGTCAGTAAGGCGAATGG
ATTTTCAGAAAATTGAATTTTTAATCCGTCAAGGACATAAGCAACTCAAA
TACTTGAACATGCCGAGTGTTTTAAGAGGCGCCTCCGTCACCCCTTCCGC
CGCATCGCGGCAttaaggaaagaggagacacGACATAATACCTTCTGTAA
AGCATGTAAATAAAGCGTCCTCACACTAACCGAAGTAAAATATGGGCAGC
ATCAAGTTTca

Coding sequence (CDS) from alignment at CM002455.1:429020..431430+

>rna163 ID=rna163|Name=rna163|organism=Nannochloropsis gaditana|type=CDS|length=2472bp|location=Sequence derived from alignment at CM002455.1:429020..431430+ (Nannochloropsis gaditana)
ATGCCTGGCACGCGCCTCTACGTGGGAAACTTGACGCCTTCCGTCACGGG
AGATGAGTTGAGGGAGATTTTCAGCGGCTACGGGCCAATTGATCGCGTGG
ACATGAAGAAAGATGGGTACGCCTTCGTAGAATTCGTGCgcggcagagaa
ggagaggatgccgTTGTTGCGGCCGCCCAAGGCATGAACAAAAAGGAACT
GCACGGTTTGATATTGACAGTAGAAGAAGCGAAGGGCCCGAAACGAGAAG
GTCCTCGTCCTGAGATGCAGCGGTCTGATTTTCGGATTCGAGTGGAAGGT
ATGCCGCGTGAAGCCACCTGGCAAGATTTGAAGGACTTcgcaagagggaa
gaaaggattgGCTCCTTTATACACAGAGGTACTCCGTGGCACTCCGGGCG
TAGGGATTATCGAGTATCACCGCCGCGAGGATATGATTGAAGCTTTGAGC
CTCATTCACAACACGGAACTGCGTGGCGTGGTGGTCCAAGTGTACGAGGA
CACCCCGATGAGCCGAGACCGCGGGCCTGAGAGGCGACCCGGGTTCAGCC
GAAGCCCCCCGGGGGATTACCGGCGGGGCGACAACCGTTTTCCGCCTCGC
GATCGTCCACGGTCCAGGTCGCGAGAGCGCTACCCGCCCAGCTACATGCC
CCCAGACCCTTACGCTTACCGTCGAGGGCGCTCTCGGTCTCGcagccccc
cgcccggtcGTTACCCACCTCCCTACCCCGAGGACCCTTATCGCCGCggc
ggccctctcccccctcctcctcaaccggCTTTCTACGACAACTACGACTA
CCGTCGTGATTCTCGCgctcgctcccgctccccccctcctcgctacGCTC
CTCCGTATGAATCCCGCTAcgtctcgcccccctcctccggcggcCGGCCC
CGGGACTACAGTCCCCGTCGTCCAAGGGCCGCGGCAGATGACGACTACCG
ttacgccccccccccccctcgctacGCGCCACCAGGACCATACGACGGTG
GACGGGAGGGATCAGCCGGTGGGtttgcgggagggaggttcccCGCGGAC
GGACGCTTCGAGGAACCCTTTGACGGCGGGCGCCACCCACCCGGACCACC
TGCGTCGTCTCGCCCCCCTGCGCACGCGCCCATGCCAGACATGTACATGC
CGGGGCCCCGTCCCCCGGgcctgggtggaggggaggctggtggaagcagg
gatccccggcggagggaatggggcgggggccggtgAATGCCTGGCACGCG
CCTCTACGTGGGAAACTTGACGCCTTCCGTCACGGGAGATGAGTTGAGGG
AGATTTTCAGCGGCTACGGGCCAATTGATCGCGTGGACATGAAGAAAGAT
GGGTACGCCTTCGTAGAATTCGTGCgcggcagagaaggagaggatgccgT
TGTTGCGGCCGCCCAAGGCATGAACAAAAAGGAACTGCACGGTTTGATAT
TGACAGTAGAAGAAGCGAAGGGCCCGAAACGAGAAGGTCCTCGTCCTGAG
ATGCAGCGGTCTGATTTTCGGATTCGAGTGGAAGGTATGCCGCGTGAAGC
CACCTGGCAAGATTTGAAGGACTTcgcaagagggaagaaaggattgGCTC
CTTTATACACAGAGGTACTCCGTGGCACTCCGGGCGTAGGGATTATCGAG
TATCACCGCCGCGAGGATATGATTGAAGCTTTGAGCCTCATTCACAACAC
GGAACTGCGTGGCGTGGTGGTCCAAGTGTACGAGGACACCCCGATGAGCC
GAGACCGCGGGCCTGAGAGGCGACCCGGGTTCAGCCGAAGCCCCCCGGGG
GATTACCGGCGGGGCGACAACCGTTTTCCGCCTCGCGATCGTCCACGGTC
CAGGTCGCGAGAGCGCTACCCGCCCAGCTACATGCCCCCAGACCCTTACG
CTTACCGTCGAGGGCGCTCTCGGTCTCGcagccccccgcccggtcGTTAC
CCACCTCCCTACCCCGAGGACCCTTATCGCCGCggcggccctctcccccc
tcctcctcaaccggCTTTCTACGACAACTACGACTACCGTCGTGATTCTC
GCgctcgctcccgctccccccctcctcgctacGCTCCTCCGTATGAATCC
CGCTAcgtctcgcccccctcctccggcggcCGGCCCCGGGACTACAGTCC
CCGTCGTCCAAGGGCCGCGGCAGATGACGACTACCGttacgccccccccc
cccctcgctacGCGCCACCAGGACCATACGACGGTGGACGGGAGGGATCA
GCCGGTGGGtttgcgggagggaggttcccCGCGGACGGACGCTTCGAGGA
ACCCTTTGACGGCGGGCGCCACCCACCCGGACCACCTGCGTCGTCTCGCC
CCCCTGCGCACGCGCCCATGCCAGACATGTACATGCCGGGGCCCCGTCCC
CCGGgcctgggtggaggggaggctggtggaagcagggatccccggcggag
ggaatggggcgggggccggtgA

Synonyms

Publications