EWM30536.1, cds163 (CDS) Nannochloropsis gaditana

Overview
NameEWM30536.1
Unique Namecds163
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:429208..429705 +
Alignment locationCM002455.1:429814..430551 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30536.1
Productserine arginine-rich splicing factor 4
Orig transcript idgnl|cribi|Naga_100013g57.9824.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:429208..429705 +
CM002455.1supercontigCM002455.1:429814..430551 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
Homology
[Close]
BLAST of EWM30536.1 vs. NCBI_GenBank
Match: gi|585113200|gb|EWM30536.1| (serine arginine-rich splicing factor 4 [Nannochloropsis gaditana])

HSP 1 Score: 780.785 bits (2015), Expect = 0.000e+0
Identity = 411/411 (100.00%), Postives = 411/411 (100.00%), Query Frame = 0 
Query:    1 MPGTRLYVGNLTPSVTGDELREIFSGYGPIDRVDMKKDGYAFVEFVRGREGEDAVVAAAQGMNKKELHGLILTVEEAKGPKREGPRPEMQRSDFRIRVEGMPREATWQDLKDFARGKKGLAPLYTEVLRGTPGVGIIEYHRREDMIEALSLIHNTELRGVVVQVYEDTPMSRDRGPERRPGFSRSPPGDYRRGDNRFPPRDRPRSRSRERYPPSYMPPDPYAYRRGRSRSRSPPPGRYPPPYPEDPYRRGGPLPPPPQPAFYDNYDYRRDSRARSRSPPPRYAPPYESRYVSPPSSGGRPRDYSPRRPRAAADDDYRYAPPPPRYAPPGPYDGGREGSAGGFAGGRFPADGRFEEPFDGGRHPPGPPASSRPPAHAPMPDMYMPGPRPPGLGGGEAGGSRDPRRREWGGGR 411
            MPGTRLYVGNLTPSVTGDELREIFSGYGPIDRVDMKKDGYAFVEFVRGREGEDAVVAAAQGMNKKELHGLILTVEEAKGPKREGPRPEMQRSDFRIRVEGMPREATWQDLKDFARGKKGLAPLYTEVLRGTPGVGIIEYHRREDMIEALSLIHNTELRGVVVQVYEDTPMSRDRGPERRPGFSRSPPGDYRRGDNRFPPRDRPRSRSRERYPPSYMPPDPYAYRRGRSRSRSPPPGRYPPPYPEDPYRRGGPLPPPPQPAFYDNYDYRRDSRARSRSPPPRYAPPYESRYVSPPSSGGRPRDYSPRRPRAAADDDYRYAPPPPRYAPPGPYDGGREGSAGGFAGGRFPADGRFEEPFDGGRHPPGPPASSRPPAHAPMPDMYMPGPRPPGLGGGEAGGSRDPRRREWGGGR
Sbjct:    1 MPGTRLYVGNLTPSVTGDELREIFSGYGPIDRVDMKKDGYAFVEFVRGREGEDAVVAAAQGMNKKELHGLILTVEEAKGPKREGPRPEMQRSDFRIRVEGMPREATWQDLKDFARGKKGLAPLYTEVLRGTPGVGIIEYHRREDMIEALSLIHNTELRGVVVQVYEDTPMSRDRGPERRPGFSRSPPGDYRRGDNRFPPRDRPRSRSRERYPPSYMPPDPYAYRRGRSRSRSPPPGRYPPPYPEDPYRRGGPLPPPPQPAFYDNYDYRRDSRARSRSPPPRYAPPYESRYVSPPSSGGRPRDYSPRRPRAAADDDYRYAPPPPRYAPPGPYDGGREGSAGGFAGGRFPADGRFEEPFDGGRHPPGPPASSRPPAHAPMPDMYMPGPRPPGLGGGEAGGSRDPRRREWGGGR 411
[Close]
BLAST of EWM30536.1 vs. NCBI_GenBank
Match: gi|667832874|ref|XP_007780606.1| (hypothetical protein W97_04527 [Coniosporium apollinis CBS 100218] >gi|494828477|gb|EON65289.1| hypothetical protein W97_04527 [Coniosporium apollinis CBS 100218])

HSP 1 Score: 111.694 bits (278), Expect = 3.464e-24
Identity = 92/270 (34.07%), Postives = 131/270 (48.52%), Query Frame = 0 
Query:    1 MPGTRLYVGNLTPSVTGDELREIFSGYGPIDRVDMK-KDGYAFVEFVRGREGEDAVVAAAQGMNKKELHGLILTVEEAKGPKREGPRPEMQRSD-------FRIRVEGMPREATWQDLKDFARGKKGLAPLYTEVLRGTPGVGIIEYHRREDMIEALSLIHNTELRGVVVQVYEDTPMSRDRG--------PERRPGFSRSPPGDYRRGDNRFPPRD--RPRSRSRERYPPSYMPPDPYAYRRGRSRSRSPPP-----GRYPPPYPEDPY 247
            +  TRLY+GNL  + T  ++   F+ +G  +  ++K  +G+ F+E+    +  D V   A  ++  +  G  L V+ A+G +R  P    +R+        FR+++ G+P E +WQDLKDFAR + GL  +Y+EV R   G G +EY    D+  A+  + N E +G  V+   D    R R         P RR G+  +PP DY   D R PPR    PR     R  P   PP  Y   R R   R PPP     GR PP Y ED Y
Sbjct:    5 VSSTRLYLGNLPRNATKADVENHFAAHGTGEITEIKLMNGFGFIEYKDAMDARDVVPGNA--IDGSDFMGERLVVQFARGSRRNEPFAHQERTAPRPRRTAFRMQITGLPVETSWQDLKDFAR-QSGLDVVYSEVSRDRDGKGFVEYETGADLTNAVEKLDNREFKGQTVRCIADIQPERPRDRFRSRSPPPGRRGGYG-APPDDYHH-DRRGPPRAGYSPRRDDYRRRSP---PPRDYYDPRDRYDRRGPPPVDDGYGRPPPRYREDAY 266
[Close]
BLAST of EWM30536.1 vs. NCBI_GenBank
Match: gi|402219133|gb|EJT99207.1| (hypothetical protein DACRYDRAFT_23817 [Dacryopinax primogenitus])

HSP 1 Score: 110.923 bits (276), Expect = 7.574e-24
Identity = 65/172 (37.79%), Postives = 99/172 (57.56%), Query Frame = 0 
Query:    1 MPGTRLYVGNLTPSVTGDELREIFSGYGPIDRVDMKKDGYAFVEFVRGREGEDAVVAAAQGMNKKELHGLILTVEEAKGPKRE--------GPRPEMQRSDFRIRVEGMPREATWQDLKDFARGKKGLAPLYTEVLRGTPGVGIIEYHRREDMIEALSLIHNTELRGVVVQV 164
            M   R+Y+G +       ++ + F GYG I  + +  +G+ FVEF   ++ ED VVA  QG N   L G  + +E AK  +RE        GPRP  +R  +R+ + G+ R+ +WQDLKDF  G++  A  ++++ R  PG GI+EY   +D+  AL L++N ELRGV V+V
Sbjct:    1 MSSKRIYIGKMPRDAMKQDIEKFFEGYGRIQDIRIM-NGFGFVEFENPKDAED-VVANFQGKN---LLGEPIIIELAKESRRERGGGFEERGPRPFTRRPGYRVLIHGVSRDTSWQDLKDF--GREAGAVTFSDLDRENPGEGILEYLTPDDLENALRLLNNRELRGVTVRV 165
[Close]
BLAST of EWM30536.1 vs. NCBI_GenBank
Match: gi|679997996|gb|KFX50241.1| (Pre-mRNA-splicing factor srp2 [Talaromyces marneffei PM1])

HSP 1 Score: 108.227 bits (269), Expect = 5.281e-23
Identity = 83/234 (35.47%), Postives = 121/234 (51.71%), Query Frame = 0 
Query:    1 MPGTRLYVGNLTPSVTGDELREIFSGYGPIDRVDMK-KDGYAFVEFVRGREGEDAVVAAAQGMNKKELHGLILTVEEAKGPKRE-----------GPRPEMQRSDFRIRVEGMPREATWQDLKDFARGKKGLAPLYTEVLRGTPGVGIIEYHRREDMIEALSLIHNTELRGVVVQVYEDTPMSRDRGPERRPGFSRSPPGDYRRG-------DNRFPPRD-RPRSRSRERYPPS 214
            +  TRLY+GNL  +VT  ++ + F  +G     ++K  +G+ F+E+      EDA+ A     +  +  G  LTV+ A+GP+ +            PRP  +R+ FR++V G+P E +WQDLKDFAR + GL  +Y+E  R   G G +E+    D+  A+  +   EL+G  V    D   + +R P R P  SRSPP   RRG       D R PPR   PR   RER P +
Sbjct:    4 VSSTRLYLGNLPRNVTKKDIEDYFGSHGTGKITEIKLMNGFGFIEY------EDAMDARDVVPDGSDFKGERLTVQFARGPRHKETFNGPSDRPSAPRP--RRTVFRMQVSGLPTETSWQDLKDFAR-QSGLDVVYSETTRERDGRGFVEFESHADLKTAVEKLDGRELKGSQVTCVADVQPAEERPPYRDPYRSRSPP---RRGYPPTDEYDRRGPPRGYSPRPHYRERSPQA 225
[Close]
BLAST of EWM30536.1 vs. NCBI_GenBank
Match: gi|1147815904|ref|XP_020123380.1| (hypothetical protein UA08_01593 [Talaromyces atroroseus] >gi|1118543281|gb|OKL63259.1| hypothetical protein UA08_01593 [Talaromyces atroroseus])

HSP 1 Score: 107.071 bits (266), Expect = 1.423e-22
Identity = 79/232 (34.05%), Postives = 118/232 (50.86%), Query Frame = 0 
Query:    1 MPGTRLYVGNLTPSVTGDELREIFSGYGPIDRVDMK-KDGYAFVEFVRGREGEDAVVAAAQGMNKKELHGLILTVEEAKGPKRE-----------GPRPEMQRSDFRIRVEGMPREATWQDLKDFARGKKGLAPLYTEVLRGTPGVGIIEYHRREDMIEALSLIHNTELRGVVVQVYEDTPMSRDRGPERRPGFSRSPPGDYRRG-------DNRFPPRD-RPRSRSRERYP 212
            +  TRLY+GNL  +VT  ++ + F  +G     ++K   G+ F+E+    +  D V A     +  +  G  LTV+ A+GP+ +            PRP  +R+ +R++V G+P E +WQDLKDFAR + GL  +Y+E  R   G G +E+    D+  A+  +   +L+G  +    D   + +R P R P  SRSPP   RRG       D R PPR   PR   RER P
Sbjct:    4 VSSTRLYLGNLPRNVTKKDIEDYFGSHGTGKITEIKLMSGFGFIEYEDAMDARDVVPA----FHGSDFKGERLTVQFARGPRHKETFNGPSDRLSAPRP--RRTVYRMQVSGLPSETSWQDLKDFAR-QSGLDVVYSETTRERDGRGFVEFESHTDLKTAVEKLDGRDLKGSHITCVADIQPAEERAPYRDPYRSRSPP---RRGYPPVDEYDRRGPPRGYSPRPHYRERSP 225
[Close]
BLAST of EWM30536.1 vs. NCBI_GenBank
Match: gi|242782227|ref|XP_002479958.1| (electron transfer flavoprotein-ubiquinone oxidoreductase [Talaromyces stipitatus ATCC 10500] >gi|218720105|gb|EED19524.1| electron transfer flavoprotein-ubiquinone oxidoreductase [Talaromyces stipitatus ATCC 10500])

HSP 1 Score: 110.153 bits (274), Expect = 3.197e-22
Identity = 86/234 (36.75%), Postives = 122/234 (52.14%), Query Frame = 0 
Query:    1 MPGTRLYVGNLTPSVTGDELREIFSGYGPIDRVDMK-KDGYAFVEFVRGREGEDAVVAAAQGMNKKELHGLILTVEEAKGPKRE-----------GPRPEMQRSDFRIRVEGMPREATWQDLKDFARGKKGLAPLYTEVLRGTPGVGIIEYHRREDMIEALSLIHNTELRGVVVQVYEDTPMSRDRGPERRPGFSRSPPGDYRRG-------DNRFPPRD-RPRSRSRERYPPS 214
            +  TRLY+GNL  +VT  ++ E F  +G     ++K  +G+ F+E+    +  D VV A  G + K   G  LTV+ A+GP+ +            PRP  +R+ FR++V G+P E +WQDLKDFAR + GL  +Y+E  R   G G +E+    D+  A+  +   EL+G  V    D   + +R P R P  SRSPP   RRG       D R PPR   PR   RER P +
Sbjct:  799 VSSTRLYLGNLPRNVTKKDIEEYFGSHGTGKITEIKLMNGFGFIEYEDAMDARD-VVPAFHGSDFK---GERLTVQFARGPRHKETFNGPSDRPAAPRP--RRTVFRMQVSGLPTETSWQDLKDFAR-QSGLDVVYSETTRERDGRGFVEFESHADLKTAVEKLDGRELKGSQVTCVADVQPAEERAPYRDPYRSRSPP---RRGYPPMDDYDRRGPPRGYSPRQHYRERSPQA 1022
[Close]
BLAST of EWM30536.1 vs. NCBI_GenBank
Match: gi|1183471017|gb|ORY94919.1| (hypothetical protein BCR43DRAFT_476840 [Syncephalastrum racemosum])

HSP 1 Score: 103.605 bits (257), Expect = 1.143e-21
Identity = 61/165 (36.97%), Postives = 93/165 (56.36%), Query Frame = 0 
Query:    3 GTRLYVGNLTPSVTGDELREIFSGYGPIDRVDMKKDGYAFVEFVRGREGEDAVVAAAQGMNKKELHGLILTVEEAKGPKREGPRPEMQRSDFRIRVEGMPREATWQDLKDFARGKKGLAPLYTEVLRGTPGVGIIEYHRREDMIEALSLIHNTELRGVVVQVYED 167
             TR+Y+G L       +L ++F  YGPI  +++K  GY FVEF   R+ +D V       + KE  G  L VE A+G +    R E + S +R+ VEG+P   +WQDLKD  R  K     + +++R  PG G++E+  R+DM  AL  + +++L G  VQ++ED
Sbjct:    2 STRVYIGRLARDCRERDLEKLFRKYGPIREINIKS-GYGFVEFKDPRDADDVVY----DFHGKEFLGERLIVELARGKRHGERRRETRHSHYRLIVEGIPSGTSWQDLKDLMR--KAGEVTFADIIRSRPGEGVVEFAYRDDMEYALRKMQDSDLNGSRVQLFED 159
[Close]
BLAST of EWM30536.1 vs. NCBI_GenBank
Match: gi|1148896912|ref|XP_020134713.1| (pre-mrna splicing factor [Diplodia corticola] >gi|1103753296|gb|OJD39726.1| pre-mrna splicing factor [Diplodia corticola])

HSP 1 Score: 105.145 bits (261), Expect = 1.246e-21
Identity = 115/352 (32.67%), Postives = 158/352 (44.89%), Query Frame = 0 
Query:    1 MPGTRLYVGNLTPSVTGDELREIFSGYGPIDRVDMK-KDGYAFVEFVRGREGEDAVVAAAQGMNKKELHGLILTVEEAKGPKREG----------PRPEMQRSDFRIRVEGMPREATWQDLKDFARGKKGLAPLYTEVLRGTPGVGIIEYHRREDMIEALSLIHNTELRGVVVQVYEDTPMSRDRGPERRPGFSRSPPGDYRRGDNRFPPRDRPRSRSRERYPPSYMPPDPYAYRRGRSRSRSPPPGRYPPPYPEDPYRRGGPLPPPPQPAFYDNYDYRRDSRARSRSPPPRYAPPYESRYVSPPSSGGRPRD--YSPRRPRAAADDDYRYAPPPPRYA---PPGPYDGGRE 336
            +  TRLY+GNL  + T  ++   F+ +G  +  ++K  +G+ F+E+    +  D V A     +  +  G  L V+ A+G +R+           PRP  +R+ FR+ + G+P E +WQDLKDFAR + GL  +Y+EV R   G G +EY    D+  A+  + N E +G  V+  +D    R   P+ RP        DY +             R RERY                 RSRSP  GR   P  +D YRRG P    P+       DYRR      RSPP  Y  P +    SPP   G P D  Y P R R   D     APPPPR      P PY  G +
Sbjct:    4 VSSTRLYLGNLPRNATKADVEAHFATHGTGEITEIKLMNGFGFIEYKDAMDARDVVPA----FHGSDFMGERLVVQFARGSRRQNDGYSHQERAVPRP--RRTPFRMSITGLPVETSWQDLKDFAR-QSGLDVVYSEVGRERDGRGFVEYETANDLRNAVEKLDNREFKGQAVRCVQDVSSPRPFSPDDRPY------SDYYQIQE---------ERPRERY-----------------RSRSPVRGRGYGPPEDDYYRRGPPRGYSPRRD-----DYRR------RSPPRDYYDPRDRYARSPPRVRGPPVDDAYPPPRARYPDDPYDARAPPPPRRGGGYEPDPYMNGHD 305
[Close]
BLAST of EWM30536.1 vs. NCBI_GenBank
Match: gi|815877550|ref|XP_004446366.1| (pre-RNA splicing factor Srp2 [Coccidioides immitis RS] >gi|320038617|gb|EFW20552.1| pre-RNA splicing factor Srp2 [Coccidioides posadasii str. Silveira] >gi|767022479|gb|KJF61523.1| pre-RNA splicing factor Srp2 [Coccidioides immitis RS])

HSP 1 Score: 104.375 bits (259), Expect = 1.265e-21
Identity = 90/249 (36.14%), Postives = 127/249 (51.00%), Query Frame = 0 
Query:    1 MPGTRLYVGNLTPSVTGDELREIFSGYGPIDRVDMK-KDGYAFVEFVRGREGEDAVVAAAQGMNKKELHGLILTVEEAKGPKRE-----------GPRPEMQRSDFRIRVEGMPREATWQDLKDFARGKKGLAPLYTEVLRGTPGVGIIEYHRREDMIEALSLIHNTELRGVVVQVYEDTPMSRDRGPERRPGFSRSPPGDYRRGDNRFPPRDRPRSRSRERYPPSYMPPDPYAYRRGRSRSRSPPPGR 237
            +  TRLY+GNL  +VT  ++ E F+ +G     D+K   G+ F+E+    +  D VV A  G + K   G  LTV+ A+GP+ +            PRP  +R+ +R+++ G+P E +WQDLKDFAR + GL  +Y+E LR   G G +E+    D+  A+  +   E +G  V   +D     DR P R P  SRSP    RRG   +PP D       +R PP    P      RG  R RSPPP R
Sbjct:    4 VSSTRLYLGNLPRNVTKQDVEEHFNQHGSGKITDIKLMSGFGFIEYEDALDARD-VVPAYHGTDFK---GSRLTVQFARGPRHKETFSGPSDRSNAPRP--RRTPYRMQISGLP-ETSWQDLKDFAR-QSGLDVVYSETLRDHEGRGFVEFETGADLKTAIEKLDGREFKGSRVTCTQDIQAPDDR-PVRDPYRSRSP---VRRGG--YPPMD-----DYDRRPPRGYSP------RGHYRERSPPPMR 227
[Close]
BLAST of EWM30536.1 vs. NCBI_GenBank
Match: gi|303317336|ref|XP_003068670.1| (RNA recognition motif containing protein [Coccidioides posadasii C735 delta SOWgp] >gi|240108351|gb|EER26525.1| RNA recognition motif containing protein [Coccidioides posadasii C735 delta SOWgp] >gi|859414183|gb|KMP07775.1| hypothetical protein CIRG_07456 [Coccidioides immitis RMSCC 2394] >gi|875277808|gb|KMU71768.1| hypothetical protein CISG_00078 [Coccidioides immitis RMSCC 3703] >gi|875635143|gb|KMU82864.1| hypothetical protein CIHG_00647 [Coccidioides immitis H538.4])

HSP 1 Score: 103.219 bits (256), Expect = 2.809e-21
Identity = 88/249 (35.34%), Postives = 126/249 (50.60%), Query Frame = 0 
Query:    1 MPGTRLYVGNLTPSVTGDELREIFSGYGPIDRVDMK-KDGYAFVEFVRGREGEDAVVAAAQGMNKKELHGLILTVEEAKGPKRE-----------GPRPEMQRSDFRIRVEGMPREATWQDLKDFARGKKGLAPLYTEVLRGTPGVGIIEYHRREDMIEALSLIHNTELRGVVVQVYEDTPMSRDRGPERRPGFSRSPPGDYRRGDNRFPPRDRPRSRSRERYPPSYMPPDPYAYRRGRSRSRSPPPGR 237
            +  TRLY+GNL  +VT  ++ E F+ +G     D+K   G+ F+E+      EDA+ A     +  +  G  LTV+ A+GP+ +            PRP  +R+ +R+++ G+P E +WQDLKDFAR + GL  +Y+E LR   G G +E+    D+  A+  +   E +G  V   +D     DR P R P  SRSP    RRG   +PP D       +R PP    P      RG  R RSPPP R
Sbjct:    4 VSSTRLYLGNLPRNVTKQDVEEHFNQHGSGKITDIKLMSGFGFIEY------EDALDARDVVPDGTDFKGSRLTVQFARGPRHKETFSGPSDRSNAPRP--RRTPYRMQISGLP-ETSWQDLKDFAR-QSGLDVVYSETLRDHEGRGFVEFETGADLKTAIEKLDGREFKGSRVTCTQDIQAPDDR-PVRDPYRSRSP---VRRGG--YPPMD-----DYDRRPPRGYSP------RGHYRERSPPPMR 225
The following BLAST results are available for this feature:
BLAST of EWM30536.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113200|gb|EWM30536.1|0.000e+0100.00serine arginine-rich splicing factor 4 [Nannochlor... [more]
gi|667832874|ref|XP_007780606.1|3.464e-2434.07hypothetical protein W97_04527 [Coniosporium apoll... [more]
gi|402219133|gb|EJT99207.1|7.574e-2437.79hypothetical protein DACRYDRAFT_23817 [Dacryopinax... [more]
gi|679997996|gb|KFX50241.1|5.281e-2335.47Pre-mRNA-splicing factor srp2 [Talaromyces marneff... [more]
gi|1147815904|ref|XP_020123380.1|1.423e-2234.05hypothetical protein UA08_01593 [Talaromyces atror... [more]
gi|242782227|ref|XP_002479958.1|3.197e-2236.75electron transfer flavoprotein-ubiquinone oxidored... [more]
gi|1183471017|gb|ORY94919.1|1.143e-2136.97hypothetical protein BCR43DRAFT_476840 [Syncephala... [more]
gi|1148896912|ref|XP_020134713.1|1.246e-2132.67pre-mrna splicing factor [Diplodia corticola] >gi|... [more]
gi|815877550|ref|XP_004446366.1|1.265e-2136.14pre-RNA splicing factor Srp2 [Coccidioides immitis... [more]
gi|303317336|ref|XP_003068670.1|2.809e-2135.34RNA recognition motif containing protein [Coccidio... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna163rna163Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications