rna1629, rna1629 (mRNA) Nannochloropsis gaditana

Overview
Namerna1629
Unique Namerna1629
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1826
Alignment locationCM002457.1:1101179..1102845 -

Link to JBrowse

Properties
Property NameValue
Productphytanoyl- dioxygenase
Orig transcript idgnl|cribi|Naga_100024g3.4306.mrna
Orig protein idgnl|cribi|Naga_100024g3.4306
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1101179..1102845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100024g3gene1566Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29048.1cds1625Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1629rna1629-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1629 ID=rna1629|Name=rna1629|organism=Nannochloropsis gaditana|type=mRNA|length=1826bp
ATGACAGGCAGCGTCGGTACCTCCGTCAAGCCCTCCATCTCCCAGCAAAA
TCATGAGGTTCTGGAGCGGATCCGGCACCACTTGGACGATCAGGAGCACA
AAATTCACGAACAGCTCAACCGTTTTCAGCTAATTAAAAAGGCCGTGGAG
CGGATTTGTAAGAATGACGACGCTTACATGCAGTCGCCAGACATTGTGAA
GGCTCAGACGACACTTGAAGATAGTCCGTTAGAGCGCAAGGGCAACACGG
CTGCCGAGGCCCTGGAGCTTCTGAAGGCGGGGAACGCCGCCTTCTTGCGC
GACGAGGTCCCGGCCAAGCAGTGTTCAGACAGGCACATTGGCCTCCACTT
CGCACAAAAACCACACGCCATCATCATCGCGTGCTCCGATTCCCGGGTCC
CTCCCGAGATGATATTCAACTGCGCTTTTGGAGAACTATTCGTCATCCGC
CTGGCGGGAAACACGATCGACGCGCTGGCCCGCGCCAGTCTCCTGTACGC
GGTGCAACACCTGCATTCCCCCTTGGTGGTTGTCCTGGGCCATGAAAAAT
GCGGCGCGGTCACCGCTGCCCTCCAGCCCCCCGAGGCCCTGGCGGAGGCC
CCAAGGGACATCAAGACACTGGTGAAGAAGATCCAATCGGGCATCGAATG
TGCCTTGTTGGAGCCCGGCCTGGAGGACGTGGACGACGAACGCTTGCTGT
GTGCGATCGTCTGCAACGTGCACTCCGTGGCGCGCACGCTGTCGGAGCAC
CCCGACATCCGCCCTTTCATCGAGCAGAAGGCGCTTTCTGTGGTGGGTGC
TTATTACGCTTTCAACGGGGTGGTCTCCTTCTTCGACGACGGCGAAGACG
GGAACGCGACGGGCAAGGAGGTGGGGAGCACCGTGAACGGCCAAGCCTCG
CTCTGCATGAGCTGCTCGGGCACCATCCACAGGAGCTCGTCCCCCACGGC
TGATCCTAGCCAGAAAGTGAACTCGCGGCTTTCGGTCTCGGAGGGCTTGA
GCAAGAACACGTGAGGACGCCGGGGCACGGGGCCAAGGAAGGAGGGGAAG
GAGGGGAAGGGAGCGGGGGGGCCTTGTGGGCAGTACCGGTACCTTTTTGA
GGTAGGAAGGAGGGATCGATGGGCTGGGCAAGCACACGTAGGGAACGCAA
GTGCACAGGTCAGCGGTCTGTACGGGACGGGTGGGTGGGGAGTGGACGGG
TGTTGCTGGGGGGGCTACCGGCAAGATCGACATTTCGAGCGGAGAAGGAG
GGAGGGAGGAAGAAAGGAAAGGAGAGAGGGAGAGAAATAGGTAGGTGGGT
TGCGCGCGGTGTGCAGGCCGGGAGCGAGGCCAGTACAGTGGTCCGAAGAA
GGAGGACTCAATGGAAAAGGAAGCGCTTTCGCATGCAAGGAGGAAGATTG
TCGAGACGAACCCTATGGGAAAAGATTCTCTTTTTTTTGGGTTAGATGAT
TAGATGGTACCTTTGAATGAATTTATGTGTACATGCGGGAGCGAGAGGGT
AGGATTGTGTAGGCGCGAGGTCGAATGCGAGGTAGCAAGGAACTGCGTGA
TAGGACAAGGAAGAGGGCTCTTCGTCGCCATTATATGCATAACAATACAG
CCCAGAGGGGGATCGGCGCGATACATTGAACGTGTCTGAGCCGTATTCCT
TCTCTGTGGGACGTCAGGTCCTATGGTCGCAGTGTGCATGCGCACGTTAG
GTCTGGAGGACTTCTCGGAGGAGATCGGGGGGAGGAGTCGCCCGATGGAA
TATAGAGGATGCTAGCGCTACCCTCTTTACGAGTTCGAAAATATCAAAGC
AAAGATACATGGATGTACACGCCGAC
back to top

protein sequence of rna1629

>rna1629-protein ID=rna1629-protein|Name=rna1629|organism=Nannochloropsis gaditana|type=polypeptide|length=307bp
MPSPRWCAEGSEDLRLPGIEEDRDLWEAYRRRFEEDGYLVLEGYWSKATC
TALRERMDHLVAGFDLAAHDSVFSTDEQNRTSDTYFLESGDKIHYFWEEG
AIDKATGAFRQPRATSINKVGHALHDLDPLFQKVTYTPQIGQLARAVGGL
HVPLVAQSMYIFKQPRIGGKVGAHQDGTFLYTEPQSVVGFWWALEDCTQK
NGCLWAVPGSHRQGVSRRFRRRNDNKGTEFYPPEAVEWDLSGGIPLEVKA
GALVLLHHALVHYSLENASAASRHAYSIHVVEGDGSSLYPQDNWLQRGST
MPFQPLP
back to top

mRNA from alignment at CM002457.1:1101179..1102845-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1629 ID=rna1629|Name=rna1629|organism=Nannochloropsis gaditana|type=mRNA|length=1667bp|location=Sequence derived from alignment at CM002457.1:1101179..1102845- (Nannochloropsis gaditana)
AAGACGGCATGATTGTTCTGGTGGATGGTGCGTGGAAAGGGGACATGCGG
CAAATGGGTAATCAAATTGGACTTCGATAGTATTTCTTATCCTCGCACCA
GAAGAGCAAAAAGAAGTCTGGTGCGGGCTCCAGGTCGGCCCACATACAAC
AATTTTATTCCTGACACTGCCAAAAAAGCTTGACAATGTCAACCGGAATG
AAGAACCCTTCACGAAAAGTGTTGTGTCGCGCGGTAGCACTTGTATGTTG
GTCTCTTCGCCTTTGTTTTCCGTCCTCACCACCGTGTCGCCCGACATTAT
TTCATGGTAAACATCCCACCCGCGAACCGCCTGCCTCACCTCCCCTCCCC
TGTCGACTTTCTGAATTTTTTCGTGCTCTGTCTTATGTACCAGCGACTCT
CTCACTCTCCTCTTCTACATATGACAGTGGTGCCTACAAAGTATGCCCTC
GCCGCGCTGGTGTGCGGAGGGCTCGGAAGATTTGCGGCTTCCCGGTATCG
AGGAAGACCGGGACCTATGGGAGGCATACCGAAGACGATTTGAGGAGGAT
GGCTATCTGGTCCTTGAGGGCTATTGGTCCAAGGCCACGTGCACAGCTTT
GCGTGAGCGCATGGATCATCTGGTGGCGGGCTTTGATCTCGCGGCCCACG
ATTCTGTCTTTTCCACGGACGAACAAAACCGGACGTCCGACACCTATTTT
CTGGAGAGCGGGGACAAGATACATTATTTTTGGGAAGAAGGAGCCATCGA
CAAGGCCACTGGCGCATTTCGTCAGCCTCGAGCTACCAGCATTAATAAAG
TGGGGCACGCGCTGCACGATTTGGACCCGCTTTTCCAAAAGGTTACATAT
ACACCCCAAATAGGTCAATTGGCGCGGGCGGTAGGCGGGCTGCACGTGCC
CCTTGTCGCCCAAAGCATGTACATATTCAAGCAACCGCGTATAGGCGGGA
AAGTTGGCGCGCACCAAGATGGAACGTTCTTGTACACGGAGCCTCAATCC
GTGGTCGGGTTCTGGTGGGCTTTGGAGGATTGCACGCAGAAGAATGGGTG
CCTATGGGCCGTCCCCGGCTCACACCGGCAGGGCGTTTCTCGGCGTTTCC
GCAGGCGCAATGACAACAAAGGGACAGAATTCTACCCTCCGGAAGCAGTG
GAATGGGATTTGAGTGGGGGAATCCCGTTGGAAGTGAAGGCGGGGGCGTT
GGTGCTCCTGCACCACGCTCTGGTCCACTACAGCCTGGAGAACGCCTCGG
CAGCCTCAAGGCACGCCTACAGCATTCATGTGGTAGAGGGGGATGGCAGC
TCTTTGTACCCCCAGGATAATTGGCTGCAGCGTGGCTCCACGATGCCGTT
CCAGCCATTGCCGTGAAGGAAAGAGGGGGGGGGACAAAATTTATAACATT
GTTAAAGGTGCCTGCGGAAAGAGGCACGTATGGAGAAAAAAAATGGCAAG
TCGGCGTGTACATCCATGTATCTTTGCTTTGATATTTTCGAACTCGTAAA
GAGGGTAGCGCTAGCATCCTCTATATTCCATCGGGCGACTCCTCCCCCCG
ATCTCCTCCGAGAAGTCCTCCAGACCTAACGTGCGCATGCACACTGCGAC
CATAGGACCTGACGTCCCACAGAGAAGGAATACGGCTCAGACACGTTCAA
TGTATCGCGCCGATCCC
back to top

Coding sequence (CDS) from alignment at CM002457.1:1101179..1102845-

>rna1629 ID=rna1629|Name=rna1629|organism=Nannochloropsis gaditana|type=CDS|length=924bp|location=Sequence derived from alignment at CM002457.1:1101179..1102845- (Nannochloropsis gaditana)
ATGCCCTCGCCGCGCTGGTGTGCGGAGGGCTCGGAAGATTTGCGGCTTCC
CGGTATCGAGGAAGACCGGGACCTATGGGAGGCATACCGAAGACGATTTG
AGGAGGATGGCTATCTGGTCCTTGAGGGCTATTGGTCCAAGGCCACGTGC
ACAGCTTTGCGTGAGCGCATGGATCATCTGGTGGCGGGCTTTGATCTCGC
GGCCCACGATTCTGTCTTTTCCACGGACGAACAAAACCGGACGTCCGACA
CCTATTTTCTGGAGAGCGGGGACAAGATACATTATTTTTGGGAAGAAGGA
GCCATCGACAAGGCCACTGGCGCATTTCGTCAGCCTCGAGCTACCAGCAT
TAATAAAGTGGGGCACGCGCTGCACGATTTGGACCCGCTTTTCCAAAAGG
TTACATATACACCCCAAATAGGTCAATTGGCGCGGGCGGTAGGCGGGCTG
CACGTGCCCCTTGTCGCCCAAAGCATGTACATATTCAAGCAACCGCGTAT
AGGCGGGAAAGTTGGCGCGCACCAAGATGGAACGTTCTTGTACACGGAGC
CTCAATCCGTGGTCGGGTTCTGGTGGGCTTTGGAGGATTGCACGCAGAAG
AATGGGTGCCTATGGGCCGTCCCCGGCTCACACCGGCAGGGCGTTTCTCG
GCGTTTCCGCAGGCGCAATGACAACAAAGGGACAGAATTCTACCCTCCGG
AAGCAGTGGAATGGGATTTGAGTGGGGGAATCCCGTTGGAAGTGAAGGCG
GGGGCGTTGGTGCTCCTGCACCACGCTCTGGTCCACTACAGCCTGGAGAA
CGCCTCGGCAGCCTCAAGGCACGCCTACAGCATTCATGTGGTAGAGGGGG
ATGGCAGCTCTTTGTACCCCCAGGATAATTGGCTGCAGCGTGGCTCCACG
ATGCCGTTCCAGCCATTGCCGTGA
back to top
Synonyms
Publications