rna1628, rna1628 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1628
Unique Name	rna1628
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1918
Alignment location	CM002457.1:1099188..1101396 +

Link to JBrowse

Properties


Property Name	Value
Product	carbonic anhydrase
Orig transcript id	gnl\|cribi\|Naga_100024g5.4321.mrna
Orig protein id	gnl\|cribi\|Naga_100024g5.4321
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:1099188..1101396 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100024g5	gene1565	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1628	rna1628-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29063.1	cds1624	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:1099188..1101396+
coding sequence from alignment at CM002457.1:1099188..1101396+

mRNA sequence

>rna1628 ID=rna1628|Name=rna1628|organism=Nannochloropsis gaditana|type=mRNA|length=1918bp
GCAGGTGGGGTGCGCATGTTCCAAGAGCAAGCACCGAGAGATACCAAGGA
AGGGGCAGCAGATGCGAGGGCAAATAAATAGGGCGAAAGCTCGTCGAGCA
CCCGGGGGAAAATTGAGGAATGTGAAGAACGTGGCGTCGGCTATCATGTT
GCAGGGTGTGGTCATCTTCGCGTTTCTGTTTTTGGCTGACTTTATTTATA
TTGGACATGTAGACGGACTTCACTTTATTGCTTCTTCGCTGCTTCCAGCC
CTCGATCTTCCGTCTCGATTTCGACATCGGTCTTTTGACTTAATCCTTCT
TTTTCCCTCCGTCCAACTTTCTGATTTCTGAGTAATATTTTCACGACTCA
CGCAAGAGACTTTAACTTTAATCTCGTTGACCATGCAACCACGCAGCCAG
CAGCCCAGATGAAAGGCTGCCACATGACTAACGACCTCAAGGCGTCGCCT
CTTATGGTGCTTTTTACGATGGGATTTTCGACTTGCGCCCAAGTGTTGAT
TGCGCCTTCCGTCCACCTTTGACCTTTGGGAGGGGAAGGCAATGAAAGTG
TCCTGTTCGCAATGCTGTAGCGTGCACGGAGCGTAGAGGTGGAAGCTTGA
TCAGATGGGGTGGTAGATTGCGGGTCTGCTGCTACCTCTCGACCTTTCAA
TTTATTCATTAAAGCACCAATGTACGTCTCATCGATATCAGCAATGGCTC
TGAGCATGCCTGGAAATGCGCCCTCCTTACTACTTCGTGAAGCTCTGCTT
CTCACAGCTTGCGTAGCAGGTGACACGCTCTTCCCCAGCCTCCTCGCCTA
TCTCTACGGTTCTCCGTCAGGAACCGATTCGCCATCTCCTCCTCTCATTC
TTCGACTCTTACTGGACAATTTCACCCATGCCACGCTAGCCTCCATGGTC
TGGTGGACTGTGCTCGCGCCGCCTGCCCCATGGCCGCCCGCCTTCTCTCG
ACCCCGCCCCCTCCCCCTCCCGCTTTACCACGAGCATCGCCACCTCTTGC
CTCGTCCCGGCCACCCCGCTCACAAACCATGCTTGGAAATACTGCTGGCC
TTCATTCTCGGAAGTGCGCTCGACCTCGACCATTTTATTGCTGCGCGCTC
CTTCTGGGGCCTACAGGGGGTGCTGCACCTCTCCCACCGCCCCCCCGGGC
ACTGCCTGACTTCCCTCCTGACTCTCACCGCATGTGTATGGACGCTGGCC
CATTACATCCAAGGACCTCAGCAAGGAGGAACAGAACCTTCCGTCCATGC
ACGTGGCACCTGCGGATGCTGCAATCAAGGGTTCTTACTGCAAAATGGAC
AACGGCTTTCCCTGCTATTCATGAGCGCCGCCCTCTCCCACCAACTCCGG
GACGCTCTCAGGCATGGCCTCTGGTTTTGCCATTTGGGATTCTCCACGGC
TCCGCTTTCCTTTCATGTGTACATTCTTCTGACGATGACTTTACCCCTGG
TGATACGCAGGCTTTTGGCAAAAAGGGGGGGAGAGGCGGAGAGAGGGGAG
GGCCCGCGTGTGGAAGAGCGCCTCGAAAACGGCGAGGACAGGGAAGAGAG
GGAAGAAGAGAGGCTAGCCATGAGGCACGCAGAGTTTCAACTAACGCGGC
AGCGGCAATTTGTTGTGTAACTGAAACGCGGGACGTGTCCGTGATGAAAG
TGCAGAAGCAAGGGGAACTTGGCAACTCCAACTGGTTTCTGTTTGTTCGT
CAGCTCTTATCGTATCTTACTCACCTGTAGGCTCTCGCAAAATGCTTTCC
TGATCTATTTCCTAATAAGCCCCGGTAGCGAGACAGATTTTAACATTTCA
TCATTTTATTGTATCGCTGTATATAGAGAATGTAGAGGACTGGGGGCGAC
TCACATCCCATGTGCATGTCCCTGTCATCTTTACCTACACACAAGGCCAA
AAAAAAAGTCCTTTTTCT

protein sequence of rna1628

>rna1628-protein ID=rna1628-protein|Name=rna1628|organism=Nannochloropsis gaditana|type=polypeptide|length=337bp
MTGSVGTSVKPSISQQNHEVLERIRHHLDDQEHKIHEQLNRFQLIKKAVE
RICKNDDAYMQSPDIVKAQTTLEDSPLERKGNTAAEALELLKAGNAAFLR
DEVPAKQCSDRHIGLHFAQKPHAIIIACSDSRVPPEMIFNCAFGELFVIR
LAGNTIDALARASLLYAVQHLHSPLVVVLGHEKCGAVTAALQPPEALAEA
PRDIKTLVKKIQSGIECALLEPGLEDVDDERLLCAIVCNVHSVARTLSEH
PDIRPFIEQKALSVVGAYYAFNGVVSFFDDGEDGNATGKEVGSTVNGQAS
LCMSCSGTIHRSSSPTADPSQKVNSRLSVSEGLSKNT

mRNA from alignment at CM002457.1:1099188..1101396+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1628 ID=rna1628|Name=rna1628|organism=Nannochloropsis gaditana|type=mRNA|length=2209bp|location=Sequence derived from alignment at CM002457.1:1099188..1101396+ (Nannochloropsis gaditana)
ATGACAGGCAGCGTCGGTACCTCCGTCaagccctccatctcccagCAAAA
TCATGAGGTTCTGGAGCGGATCCGGCACCACTTGGACGATCAGGAGCACA
AAATTCACGAACAGCTCAACCGTTTTCAGCTAATTAAAAAGTACGGGCCA
CAATTTGGTGGGATAGGAGCGTGGGAGTGAAATGATGACTGATCGAATCT
CTCTTGCCTTCAACGTATGTGATTTTCCGGTTGACAGGGCCGTGGAGCGG
ATTTGTAAGAATGACGACGCTTACATGCAGTCGCCAGACATTGTGAAGGC
TCAGACGACACTTGAAGATAGTCCGTTAGAGCGCAAGGGCAACACGGTAC
GGACAGTATAGAtggaacagggaggggatgaaaaGTAAATCGTGACCGCG
TACGCCGTTTTGTCTGTCCCTTAACCCGCATTCAACTGGAAATAAAAAAC
CTGGACAGGCtgccgaggccctggagcTTCTGAAGGCGGGGAACGCCGCC
TTCTTGCGCGACGAGGTCCCGGCCAAGCAGTGTTCAGACAGGCACATTGG
CCTCCACTTCGCACAAAAACCACACGCCATCATCATCGCGTGCTCCGATT
CCCGGGTCCCTCCCGAGATGATATTCAACTGCGCTTTTGGAGAACTGTAA
GTCATATTCGAGGGGATGGCCGCAGCTGagatgaaagagaaagggaggaa
agagtgcAGTAGTAGCGTTCGAGTGGATGTTATCATACCCGCGTTCTTTC
CCAGCTACTCGGACTACAAAAGCACTCGGGGGCATTCTCACCCTCACTTA
tccactgccctccctcttagATTCGTCATCCGCCTGGCGGGAAACACGAT
CGACGCGCTGGCCCGCGCCAGTCTCCTGTACGCGGTGCAACACCTGCATT
CCCCCTTGGTGGTTGTCCTGGGCCATGAAAAATGCGGCGCGGTCACCGCt
gccctccagccccccgaggccctggcggaggccCCAAGGGACATCAAGAC
ACTGGTGAAGAAGATCCAATCGGGCATCGAATGTGCCTTGTTGGAGCCcg
gcctggaggacgtggacgacgaACGCTTGCTGTGTGCGATCGTCTGCAAC
GTGCACTCCGTGGCGCGCACGCTGTCGGAGCACCCCGACATCCGCCCTTT
CATCGAGCAGAAGGCGCTTTCTGTGGTGGGTGCTTATTACGCTTTCAACG
GGGtggtctccttcttcgaCGACGGCGAAGACGGGAACGCGacgggcaag
gaggtggggagcACCGTGAACGGCCAAGCCTCGCTCTGCATGAGCTGCTC
GGGCACCATCCACAGGAGCTCGTCCCCCACGGCTGATCCTAGCCAGAAAG
TGAACTCGCGGCTTTCGGTCTCGGAGGGCTTGAGCAAGAACACGTGAGGA
CGCCGGGGCACGgggccaaggaaggaggggaaggaggggaagggagcggg
ggggccTTGTGGGCAGTACCGGTACCTTTTtgaggtaggaaggagggatc
gaTGGGCTGGGCAAGCACACGTAGGGAACGCAAGTGCACAGGTCAGCGGT
CTGTACGGgacgggtgggtggggagtgGACGGGTGTTGCTGGGGGGGCTA
CCGGCAAGATCGACATTTcgagcggagaaggagggagggaggaagaaagg
aaaggagagagggagagaaataGGTAGGTGGGTTGCGCGCGGTGTGCAGG
CCGGGAGCGAGGCCAGTACAGTGGtccgaagaaggaggactcaatggaaa
aggaagcgcTTTCGCatgcaaggaggaagattgTCGAGACGAACCCTATG
GGAAAAgattctcttttttttgggtTAGATGATTAGATGGTACCTTTGAA
TGAATTTATGTGTACATGCGGGAGCGAGAGGGTAGGATTGTGTAGGCGCG
AGGTCGAATGCGAGGTAGCAAGGAACTGCGTGAtaggacaaggaagaggg
ctcTTCGTCGCCATTATATGCATAACAATACAGCCCAGAGGGGGATCGGC
GCGATACATTGAACGTGTCTGAGCCGTATTCCTTCTCTGTGGGACGTCAG
GTCCTATGGTCGCAGTGTGCATGCGCACGTTAGGTCTGGAGGACTTCTCG
GAGGAGatcggggggaggagtcgcCCGATGGAATATAGAGGATGCTAGCG
CTACCCTCTTTACGAGTTCGAAAATATCAAAGCAAAGATACATGGATGTA
CACGCCGAC

Coding sequence (CDS) from alignment at CM002457.1:1099188..1101396+

>rna1628 ID=rna1628|Name=rna1628|organism=Nannochloropsis gaditana|type=CDS|length=4056bp|location=Sequence derived from alignment at CM002457.1:1099188..1101396+ (Nannochloropsis gaditana)
ATGACAGGCAGCGTCGGTACCTCCGTCaagccctccatctcccagCAAAA
TCATGAGGTTCTGGAGCGGATCCGGCACCACTTGGACGATCAGGAGCACA
AAATTCACGAACAGCTCAACCGTTTTCAGCTAATTAAAAAGGCCGTGGAG
CGGATTTGTAAGAATGACGACGCTTACATGCAGTCGCCAGACATTGTGAA
GGCTCAGACGACACTTGAAGATAGTCCGTTAGAGCGCAAGGGCAACACGG
CtgccgaggccctggagcTTCTGAAGGCGGGGAACGCCGCCTTCTTGCGC
GACGAGGTCCCGGCCAAGCAGTGTTCAGACAGGCACATTGGCCTCCACTT
CGCACAAAAACCACACGCCATCATCATCGCGTGCTCCGATTCCCGGGTCC
CTCCCGAGATGATATTCAACTGCGCTTTTGGAGAACTATTCGTCATCCGC
CTGGCGGGAAACACGATCGACGCGCTGGCCCGCGCCAGTCTCCTGTACGC
GGTGCAACACCTGCATTCCCCCTTGGTGGTTGTCCTGGGCCATGAAAAAT
GCGGCGCGGTCACCGCtgccctccagccccccgaggccctggcggaggcc
CCAAGGGACATCAAGACACTGGTGAAGAAGATCCAATCGGGCATCGAATG
TGCCTTGTTGGAGCCcggcctggaggacgtggacgacgaACGCTTGCTGT
GTGCGATCGTCTGCAACGTGCACTCCGTGGCGCGCACGCTGTCGGAGCAC
CCCGACATCCGCCCTTTCATCGAGCAGAAGGCGCTTTCTGTGGTGGGTGC
TTATTACGCTTTCAACGGGGtggtctccttcttcgaCGACGGCGAAGACG
GGAACGCGacgggcaaggaggtggggagcACCGTGAACGGCCAAGCCTCG
CTCTGCATGAGCTGCTCGGGCACCATCCACAGGAGCTCGTCCCCCACGGC
TGATCCTAGCCAGAAAGTGAACTCGCGGCTTTCGGTCTCGGAGGGCTTGA
GCAAGAACACGTGAATGACAGGCAGCGTCGGTACCTCCGTCaagccctcc
atctcccagCAAAATCATGAGGTTCTGGAGCGGATCCGGCACCACTTGGA
CGATCAGGAGCACAAAATTCACGAACAGCTCAACCGTTTTCAGCTAATTA
AAAAGGCCGTGGAGCGGATTTGTAAGAATGACGACGCTTACATGCAGTCG
CCAGACATTGTGAAGGCTCAGACGACACTTGAAGATAGTCCGTTAGAGCG
CAAGGGCAACACGGCtgccgaggccctggagcTTCTGAAGGCGGGGAACG
CCGCCTTCTTGCGCGACGAGGTCCCGGCCAAGCAGTGTTCAGACAGGCAC
ATTGGCCTCCACTTCGCACAAAAACCACACGCCATCATCATCGCGTGCTC
CGATTCCCGGGTCCCTCCCGAGATGATATTCAACTGCGCTTTTGGAGAAC
TATTCGTCATCCGCCTGGCGGGAAACACGATCGACGCGCTGGCCCGCGCC
AGTCTCCTGTACGCGGTGCAACACCTGCATTCCCCCTTGGTGGTTGTCCT
GGGCCATGAAAAATGCGGCGCGGTCACCGCtgccctccagccccccgagg
ccctggcggaggccCCAAGGGACATCAAGACACTGGTGAAGAAGATCCAA
TCGGGCATCGAATGTGCCTTGTTGGAGCCcggcctggaggacgtggacga
cgaACGCTTGCTGTGTGCGATCGTCTGCAACGTGCACTCCGTGGCGCGCA
CGCTGTCGGAGCACCCCGACATCCGCCCTTTCATCGAGCAGAAGGCGCTT
TCTGTGGTGGGTGCTTATTACGCTTTCAACGGGGtggtctccttcttcga
CGACGGCGAAGACGGGAACGCGacgggcaaggaggtggggagcACCGTGA
ACGGCCAAGCCTCGCTCTGCATGAGCTGCTCGGGCACCATCCACAGGAGC
TCGTCCCCCACGGCTGATCCTAGCCAGAAAGTGAACTCGCGGCTTTCGGT
CTCGGAGGGCTTGAGCAAGAACACGTGAATGACAGGCAGCGTCGGTACCT
CCGTCaagccctccatctcccagCAAAATCATGAGGTTCTGGAGCGGATC
CGGCACCACTTGGACGATCAGGAGCACAAAATTCACGAACAGCTCAACCG
TTTTCAGCTAATTAAAAAGGCCGTGGAGCGGATTTGTAAGAATGACGACG
CTTACATGCAGTCGCCAGACATTGTGAAGGCTCAGACGACACTTGAAGAT
AGTCCGTTAGAGCGCAAGGGCAACACGGCtgccgaggccctggagcTTCT
GAAGGCGGGGAACGCCGCCTTCTTGCGCGACGAGGTCCCGGCCAAGCAGT
GTTCAGACAGGCACATTGGCCTCCACTTCGCACAAAAACCACACGCCATC
ATCATCGCGTGCTCCGATTCCCGGGTCCCTCCCGAGATGATATTCAACTG
CGCTTTTGGAGAACTATTCGTCATCCGCCTGGCGGGAAACACGATCGACG
CGCTGGCCCGCGCCAGTCTCCTGTACGCGGTGCAACACCTGCATTCCCCC
TTGGTGGTTGTCCTGGGCCATGAAAAATGCGGCGCGGTCACCGCtgccct
ccagccccccgaggccctggcggaggccCCAAGGGACATCAAGACACTGG
TGAAGAAGATCCAATCGGGCATCGAATGTGCCTTGTTGGAGCCcggcctg
gaggacgtggacgacgaACGCTTGCTGTGTGCGATCGTCTGCAACGTGCA
CTCCGTGGCGCGCACGCTGTCGGAGCACCCCGACATCCGCCCTTTCATCG
AGCAGAAGGCGCTTTCTGTGGTGGGTGCTTATTACGCTTTCAACGGGGtg
gtctccttcttcgaCGACGGCGAAGACGGGAACGCGacgggcaaggaggt
ggggagcACCGTGAACGGCCAAGCCTCGCTCTGCATGAGCTGCTCGGGCA
CCATCCACAGGAGCTCGTCCCCCACGGCTGATCCTAGCCAGAAAGTGAAC
TCGCGGCTTTCGGTCTCGGAGGGCTTGAGCAAGAACACGTGAATGACAGG
CAGCGTCGGTACCTCCGTCaagccctccatctcccagCAAAATCATGAGG
TTCTGGAGCGGATCCGGCACCACTTGGACGATCAGGAGCACAAAATTCAC
GAACAGCTCAACCGTTTTCAGCTAATTAAAAAGGCCGTGGAGCGGATTTG
TAAGAATGACGACGCTTACATGCAGTCGCCAGACATTGTGAAGGCTCAGA
CGACACTTGAAGATAGTCCGTTAGAGCGCAAGGGCAACACGGCtgccgag
gccctggagcTTCTGAAGGCGGGGAACGCCGCCTTCTTGCGCGACGAGGT
CCCGGCCAAGCAGTGTTCAGACAGGCACATTGGCCTCCACTTCGCACAAA
AACCACACGCCATCATCATCGCGTGCTCCGATTCCCGGGTCCCTCCCGAG
ATGATATTCAACTGCGCTTTTGGAGAACTATTCGTCATCCGCCTGGCGGG
AAACACGATCGACGCGCTGGCCCGCGCCAGTCTCCTGTACGCGGTGCAAC
ACCTGCATTCCCCCTTGGTGGTTGTCCTGGGCCATGAAAAATGCGGCGCG
GTCACCGCtgccctccagccccccgaggccctggcggaggccCCAAGGGA
CATCAAGACACTGGTGAAGAAGATCCAATCGGGCATCGAATGTGCCTTGT
TGGAGCCcggcctggaggacgtggacgacgaACGCTTGCTGTGTGCGATC
GTCTGCAACGTGCACTCCGTGGCGCGCACGCTGTCGGAGCACCCCGACAT
CCGCCCTTTCATCGAGCAGAAGGCGCTTTCTGTGGTGGGTGCTTATTACG
CTTTCAACGGGGtggtctccttcttcgaCGACGGCGAAGACGGGAACGCG
acgggcaaggaggtggggagcACCGTGAACGGCCAAGCCTCGCTCTGCAT
GAGCTGCTCGGGCACCATCCACAGGAGCTCGTCCCCCACGGCTGATCCTA
GCCAGAAAGTGAACTCGCGGCTTTCGGTCTCGGAGGGCTTGAGCAAGAAC
ACGTGA

Synonyms

Publications