rna1627, rna1627 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1627
Unique Name	rna1627
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3141
Alignment location	CM002457.1:1096939..1098856 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100024g6.4333.mrna
Orig protein id	gnl\|cribi\|Naga_100024g6.4333
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:1096939..1098856 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100024g6	gene1564	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29075.1	cds1623	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1627	rna1627-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:1096939..1098856-
coding sequence from alignment at CM002457.1:1096939..1098856-

mRNA sequence

>rna1627 ID=rna1627|Name=rna1627|organism=Nannochloropsis gaditana|type=mRNA|length=3141bp
AAGGGCAACTTACGTCTGGTTCAGGAGTCGTGGCGAGTCACTCTTAGACA
ACGGTCAAAAGTACCGGCTCATGTGCTCGAAGAAGTTTTGGGTGAAGTAT
CGTATGGACAGCCGCAATTTTTTTCTCTTGACCTCCCTCTGTCCACACCT
TGTCCCCGTGCCCCTCGCTCCCGCCCTCGTCATACTGAAAAACCTGTCTG
GGGTATGCGACGACCGACAAGCGGACTCTCGCCGTCTTATTGAAAGGGGT
TGGACACGTCCCAGCATCTGGTGCATCTTCTGTAATTGGAGCTCTCGACC
TGAAATTATAACGACTCACGCATCTTATGCATTTTATGACAGCAGGGAGG
AGTGACCTGCCAGGATTTTATTTCCCTCAACAAGTGTAATAAGCAGGAAG
CCACGCACGCACGGAACTCCTCCGTGTAGATGAGCAAATCAATCGGCAAG
GGATGCGCCCGTAGACGCCTTTTCTATCTCTTTACTCTAGGCGCGTTGTG
TCGGCGTGGCGATGGCAGCCTCGAGACAACCCATTCCTTCCACGCCTCCT
CGTCCAAGCCATCGTCTCCGTCAGCTTGGAAGGAGCACGAAGCGGAGCAG
CACCCGCTTCGACGGCAACAGAAGGAACCACAAATAAGACCAGCGTCAGC
GGTTGGGAAATGCAATTCGCCCTCATCCATGAAATCGACAACGTCGTCCC
TACCCTCCCGCGGTGGTGCGGGAGGGGCAGCGAGCCCGACCGGCGCGCCG
GTGCACGTCCAAGACACGGAGATGAAAAAGCTTTTGAAGCGCGGTCAGTT
GCAAGCTACTGGTTTCGACAAAGAAAAGGATCATGAGGCGTCCATGGATG
GAAGCGGAGACAGCCCTTCCCGCTTCGCCCTCGTGCGACGGGGTCTCTAT
CTCCTCTACCTCTTCAGTGCCGCCATCCTGACTGCCCTCCTCGCCCTCGT
TTCCGAACGCTTCCGCAGCCCATATTGGTACAGAATGATTACTTGTGCCA
TATCCCAGGCAGGGGCTGCTTTTATCAAGTGGGGCCAGTGGGCCTCGGCC
CGGCCTGACATCTTTCCCGAGGAATTTTGCAGCACACTCGCCATGCTGCA
CTCTTTCGCCCCGACCCATTCCTTTGCCTTCACGAAGCAAGCGATCGAGG
AAGCCTTCGCGCGCCCTTTGGAGGAGGTCTTCGAAGCTTTCGACCCGGAT
CCCATAGCCTCGGGAAGCATCGCCCAAGTGCACGCGGCGGTGATGAAAGG
ACGCCGGGTGGCTGTGAAAGTGCGCCATCCGGGGGTAGCGGCACAGATCG
ACATCGACTTCCGGGTTATGAAGAAGGTGGCAAGCCTTGCAGATATGATT
CCTGCCTTGAAATTCTTGAATCTGGGGCACAGCATGGAGCAATTTTCCCA
CACGCTGGCCAGTCAGACCAAGCTCGACGTGGAGGGGCGGCATCTCCTGC
TTCTGAACCACAATTTCCGGAAGTGGCGCTCTTCCTTACGTTTTCCGGAG
CCTTTGGTGCTGTCGGAAGGGGTCTTGGTGGAAAGCTGGGAGGAAGGGGT
GATCATCTCGGACTTCATTGCCCGCTACAGCCGGTGGCGGGAGCTGGAGG
CCCAAGGCTGTCAAATGTGCGGACAGGTCTTCGGCGCCTACACGCACCTC
CGTCTCTTTATCCAGGACACCTTGCTCTTGCCCATCAAGCCCCTGGTGGA
TGCCTGGAAAATGGACGCGGCGAGGAAGCGAATGGAGGCGGAGAAAGCGG
CGGACGTCCAGGCAGAGGCTGCCGCTGAAGAGGCCGTGGCCGGGAGGCCA
GTGGAGGGACAAGGCGATGCCGCAGCGTCCTTGGCGGAATTGAAGAATGC
CAAGAACCGACGCCGCGCCCCCTTGAGCGTGGAGCTCGCCCACTTCATCG
TGAGCACGGGGGAAGACCTGTACTTGAAAATGCTTCTGGTCGACAACCTC
ATGCATGCCGATCTGCATCCGGGGAACATCCTCATACACGTGAACCGGAA
CGGCCGCCCTGTCCTGACCTTGGTGGACGCGGGGATGGTGGCGAAATTGT
CCGACGTGGAGCGGGCGAATTTTATCGGGCTCCTAGAGTCCATGGGAAGG
GGGGACGGGGCTCGGGCGGCCCGGCATGTGCTGGGTTTCTCTTTGACACA
AACCTGCGTGGGGGAAGACGCCACGGCTTTCGAGCAGGAGATGTGGGAGG
TGTTTGCCCTCCATTGCCGCGGCTACAACACGGACGTGAGCATCGGCGTC
GTCCTCCGGGAAGTCCTGGCCCTTGTTCGTAAATTCCACGTACGGGTGGA
TGTGAACTACGCGACACTCCTGATCAACCTGCTGTGCTTGGAGGGGATGG
CGGCGGCTCTCCTCCCGTCCTACAATATCCTGGACCGGGCAAAACCCTTG
TTGGTCCCTCACTCCAACAAGCTGCTCCGGCCTTTCTTCCGCCGGATCTA
CCCCCTCCTTCTAGGCTTCAAACGACGCGGGGAAAGCGCTCTCTTTAACC
TGCTGAAGAAGACCGGTAACGTGCAACAACCGCACGCTCCATTGGCCATT
GGCAGTGGCAGCGACGACAGCAGCACGAAAGATTCTTCCTCTTTCCTTCC
GGCGGATCGCCACGCTCCCCGCATTAAGAGCCCTGTAGGTTAAAGGAAGT
TAAACTCGACGTGGGTCTGTCCCTGATATAAAACCTGGAGCGGATGATTG
CATGACCCCTTCTTCTAAAAAACTTTCTAAAATCGTATCAGAAATGAAAT
CTTCGTTTTTAATCGAGGGGTTTTGGAGGTTTATGAAGATATCGCGCTGT
ACAGAGGGCCACTTTGCGTCAGAAATAAAGGGTGGGGGTGACTAGGAGAA
AGCGAGCGTGCGTCTTCCACTACTTAAAGAGGGATGACAGAAAAAGGACT
TTTTTTTTGGCCTTGTGTGTAGGTAAAGATGACAGGGACATGCACATGGG
ATGTGAGTCGCCCCCAGTCCTCTACATTCTCTATATACAGCGATACAATA
AAATGATGAAATGTTAAAATCTGTCTCGCTACCGGGGCTTATTAGGAAAT
AGATCAGGAAAGCATTTTGCGAGAGCCTACAGGTGAGTAAGATACGATAA
GAGCTGACGAACAAACAGAAACCAGTTGGAGTTGCCAAGTT

protein sequence of rna1627

>rna1627-protein ID=rna1627-protein|Name=rna1627|organism=Nannochloropsis gaditana|type=polypeptide|length=316bp
MYVSSISAMALSMPGNAPSLLLREALLLTACVAGDTLFPSLLAYLYGSPS
GTDSPSPPLILRLLLDNFTHATLASMVWWTVLAPPAPWPPAFSRPRPLPL
PLYHEHRHLLPRPGHPAHKPCLEILLAFILGSALDLDHFIAARSFWGLQG
VLHLSHRPPGHCLTSLLTLTACVWTLAHYIQGPQQGGTEPSVHARGTCGC
CNQGFLLQNGQRLSLLFMSAALSHQLRDALRHGLWFCHLGFSTAPLSFHV
YILLTMTLPLVIRRLLAKRGGEAERGEGPRVEERLENGEDREEREEERLA
MRHAEFQLTRQRQFVV

mRNA from alignment at CM002457.1:1096939..1098856-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1627 ID=rna1627|Name=rna1627|organism=Nannochloropsis gaditana|type=mRNA|length=1918bp|location=Sequence derived from alignment at CM002457.1:1096939..1098856- (Nannochloropsis gaditana)
GCAGGTGGGGTGCGCATGTTCCAAGAGCAAGCACCGAGAGATACCAAGGA
AGGGGCAGCAGATGCGAGGGCAAATAAATAGGGCGAAAGCTCGTCGAGCA
CCCGGGGGAAAATTGAGGAATGTGAAGAACGTGGCGTCGGCTATCATGTT
GCAGGGTGTGGTCATCTTCGCGTTTCTGTTTTTGGCTGACTTTATTTATA
TTGGACATGTAGACGGACTTCACTTTATTGCTTCTTCGCTGCTTCCAGCC
CTCGATCTTCCGTCTCGATTTCGACATCGGTCTTTTGACTTAATCCTTCT
TTTTCCCTCCGTCCAACTTTCTGATTTCTGAGTAATATTTTCACGACTCA
CGCAAGAGACTTTAACTTTAATCTCGTTGACCATGCAACCACGCAGCCAG
CAGCCCAGATGAAAGGCTGCCACATGACTAACGACCTCAAGGCGTCGCCT
CTTATGGTGCTTTTTACGATGGGATTTTCGACTTGCGCCCAAGTGTTGAT
TGCGCCTTCCGTCCACCTTTGACCTTTGGGAGGGGAAGGCAATGAAAGTG
TCCTGTTCGCAATGCTGTAGCGTGCACGGAGCGTAGAGGTGGAAGCTTGA
TCAGATGGGGTGGTAGATTGCGGGTCTGCTGCTACCTCTCGACCTTTCAA
TTTATTCATTAAAGCACCAATGTACGTCTCATCGATATCAGCAATGGCTC
TGAGCATGCCTGGAAATGCGCCCTCCTTACTACTTCGTGAAGCTCTGCTT
CTCACAGCTTGCGTAGCAGGTGACACGCTCTTCCCCAGCCTCCTCGCCTA
TCTCTACGGTTCTCCGTCAGGAACCGATTCGCCATCTCCTCCTCTCATTC
TTCGACTCTTACTGGACAATTTCACCCATGCCACGCTAGCCTCCATGGTC
TGGTGGACTGTGCTCGCGCCGCCTGCCCCATGGCCGCCCGCCTTCTCTCG
ACCCCGCCCCCTCCCCCTCCCGCTTTACCACGAGCATCGCCACCTCTTGC
CTCGTCCCGGCCACCCCGCTCACAAACCATGCTTGGAAATACTGCTGGCC
TTCATTCTCGGAAGTGCGCTCGACCTCGACCATTTTATTGCTGCGCGCTC
CTTCTGGGGCCTACAGGGGGTGCTGCACCTCTCCCACCGCCCCCCCGGGC
ACTGCCTGACTTCCCTCCTGACTCTCACCGCATGTGTATGGACGCTGGCC
CATTACATCCAAGGACCTCAGCAAGGAGGAACAGAACCTTCCGTCCATGC
ACGTGGCACCTGCGGATGCTGCAATCAAGGGTTCTTACTGCAAAATGGAC
AACGGCTTTCCCTGCTATTCATGAGCGCCGCCCTCTCCCACCAACTCCGG
GACGCTCTCAGGCATGGCCTCTGGTTTTGCCATTTGGGATTCTCCACGGC
TCCGCTTTCCTTTCATGTGTACATTCTTCTGACGATGACTTTACCCCTGG
TGATACGCAGGCTTTTGGCAAAAAGGGGGGGAGAGGCGGAGAGAGGGGAG
GGCCCGCGTGTGGAAGAGCGCCTCGAAAACGGCGAGGACAGGGAAGAGAG
GGAAGAAGAGAGGCTAGCCATGAGGCACGCAGAGTTTCAACTAACGCGGC
AGCGGCAATTTGTTGTGTAACTGAAACGCGGGACGTGTCCGTGATGAAAG
TGCAGAAGCAAGGGGAACTTGGCAACTCCAACTGGTTTCTGTTTGTTCGT
CAGCTCTTATCGTATCTTACTCACCTGTAGGCTCTCGCAAAATGCTTTCC
TGATCTATTTCCTAATAAGCCCCGGTAGCGAGACAGATTTTAACATTTCA
TCATTTTATTGTATCGCTGTATATAGAGAATGTAGAGGACTGGGGGCGAC
TCACATCCCATGTGCATGTCCCTGTCATCTTTACCTACACACAAGGCCAA
AAAAAAAGTCCTTTTTCT

Coding sequence (CDS) from alignment at CM002457.1:1096939..1098856-

>rna1627 ID=rna1627|Name=rna1627|organism=Nannochloropsis gaditana|type=CDS|length=951bp|location=Sequence derived from alignment at CM002457.1:1096939..1098856- (Nannochloropsis gaditana)
ATGTACGTCTCATCGATATCAGCAATGGCTCTGAGCATGCCTGGAAATGC
GCCCTCCTTACTACTTCGTGAAGCTCTGCTTCTCACAGCTTGCGTAGCAG
GTGACACGCTCTTCCCCAGCCTCCTCGCCTATCTCTACGGTTCTCCGTCA
GGAACCGATTCGCCATCTCCTCCTCTCATTCTTCGACTCTTACTGGACAA
TTTCACCCATGCCACGCTAGCCTCCATGGTCTGGTGGACTGTGCTCGCGC
CGCCTGCCCCATGGCCGCCCGCCTTCTCTCGACCCCGCCCCCTCCCCCTC
CCGCTTTACCACGAGCATCGCCACCTCTTGCCTCGTCCCGGCCACCCCGC
TCACAAACCATGCTTGGAAATACTGCTGGCCTTCATTCTCGGAAGTGCGC
TCGACCTCGACCATTTTATTGCTGCGCGCTCCTTCTGGGGCCTACAGGGG
GTGCTGCACCTCTCCCACCGCCCCCCCGGGCACTGCCTGACTTCCCTCCT
GACTCTCACCGCATGTGTATGGACGCTGGCCCATTACATCCAAGGACCTC
AGCAAGGAGGAACAGAACCTTCCGTCCATGCACGTGGCACCTGCGGATGC
TGCAATCAAGGGTTCTTACTGCAAAATGGACAACGGCTTTCCCTGCTATT
CATGAGCGCCGCCCTCTCCCACCAACTCCGGGACGCTCTCAGGCATGGCC
TCTGGTTTTGCCATTTGGGATTCTCCACGGCTCCGCTTTCCTTTCATGTG
TACATTCTTCTGACGATGACTTTACCCCTGGTGATACGCAGGCTTTTGGC
AAAAAGGGGGGGAGAGGCGGAGAGAGGGGAGGGCCCGCGTGTGGAAGAGC
GCCTCGAAAACGGCGAGGACAGGGAAGAGAGGGAAGAAGAGAGGCTAGCC
ATGAGGCACGCAGAGTTTCAACTAACGCGGCAGCGGCAATTTGTTGTGTA
A

Synonyms

Publications