EWM29075.1, cds1623 (CDS) Nannochloropsis gaditana

Overview
NameEWM29075.1
Unique Namecds1623
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1097237..1098187 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29075.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100024g6.4333.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1097237..1098187 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR026572C5orf28-like
Homology
BLAST of EWM29075.1 vs. NCBI_GenBank
Match: gi|585111594|gb|EWM29075.1| (hypothetical protein Naga_100024g6 [Nannochloropsis gaditana])

HSP 1 Score: 633.639 bits (1633), Expect = 0.000e+0
Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 0
Query:    1 MYVSSISAMALSMPGNAPSLLLREALLLTACVAGDTLFPSLLAYLYGSPSGTDSPSPPLILRLLLDNFTHATLASMVWWTVLAPPAPWPPAFSRPRPLPLPLYHEHRHLLPRPGHPAHKPCLEILLAFILGSALDLDHFIAARSFWGLQGVLHLSHRPPGHCLTSLLTLTACVWTLAHYIQGPQQGGTEPSVHARGTCGCCNQGFLLQNGQRLSLLFMSAALSHQLRDALRHGLWFCHLGFSTAPLSFHVYILLTMTLPLVIRRLLAKRGGEAERGEGPRVEERLENGEDREEREEERLAMRHAEFQLTRQRQFVV 316
            MYVSSISAMALSMPGNAPSLLLREALLLTACVAGDTLFPSLLAYLYGSPSGTDSPSPPLILRLLLDNFTHATLASMVWWTVLAPPAPWPPAFSRPRPLPLPLYHEHRHLLPRPGHPAHKPCLEILLAFILGSALDLDHFIAARSFWGLQGVLHLSHRPPGHCLTSLLTLTACVWTLAHYIQGPQQGGTEPSVHARGTCGCCNQGFLLQNGQRLSLLFMSAALSHQLRDALRHGLWFCHLGFSTAPLSFHVYILLTMTLPLVIRRLLAKRGGEAERGEGPRVEERLENGEDREEREEERLAMRHAEFQLTRQRQFVV
Sbjct:    1 MYVSSISAMALSMPGNAPSLLLREALLLTACVAGDTLFPSLLAYLYGSPSGTDSPSPPLILRLLLDNFTHATLASMVWWTVLAPPAPWPPAFSRPRPLPLPLYHEHRHLLPRPGHPAHKPCLEILLAFILGSALDLDHFIAARSFWGLQGVLHLSHRPPGHCLTSLLTLTACVWTLAHYIQGPQQGGTEPSVHARGTCGCCNQGFLLQNGQRLSLLFMSAALSHQLRDALRHGLWFCHLGFSTAPLSFHVYILLTMTLPLVIRRLLAKRGGEAERGEGPRVEERLENGEDREEREEERLAMRHAEFQLTRQRQFVV 316          
BLAST of EWM29075.1 vs. NCBI_GenBank
Match: gi|961121424|ref|XP_014782630.1| (PREDICTED: transmembrane protein C5orf28 homolog [Octopus bimaculoides] >gi|918299727|gb|KOF74113.1| hypothetical protein OCBIM_22036746mg [Octopus bimaculoides])

HSP 1 Score: 90.8929 bits (224), Expect = 6.639e-18
Identity = 82/247 (33.20%), Postives = 116/247 (46.96%), Query Frame = 0
Query:   17 APSLLLREALLLTACVAGDTLFPSLLAYLYGSPSGTDSPSPPLILRLLLDNFTHATLASMVWWTVLAPPAPWPPAFSRPRPLPLPLYHEHRHLLPRPGHPAHKPCLEILLAFILGSALDLDHFIAARSFWGLQGVLHLSHRPPGHCLTSLLTLTACVWTLAHYIQGPQQGGTEPSVHARGTCGCCNQGFLLQNGQRLSLLFMSAALSHQLRDALRHGLWFCHLGFSTAPLSFHVYILLTMTLPLVIR 263
            +P L++   LL+  C+ GD L P +    +  P         L LR+ +DNFTH  +  + W  VL          +    LP   +   R L+           L  LL  +L  ++D+DHF+AARSF  LQ  L L  RPP HC T+L+ +      L  Y           + H+R  C C           + SLLF++A LSH +RDA RHGLW    G +T PL + VYIL T+ LP+ ++
Sbjct:    7 SPMLIVYSVLLVLTCLIGDHL-PRMN---HVGPYINRH----LFLRVAIDNFTHGIIGFLSWAIVLDLDLVNTDTNAPVMFLPSSGFVPTRSLMDV----QQSSLLACLLCMVLAMSVDVDHFLAARSF-SLQDALSLPSRPPFHC-TTLIPVVVASSLLMTY-----------AFHSRQFCRC----------FKFSLLFLTAFLSHHIRDARRHGLWLWPFG-ATPPLPYMVYILCTLLLPVAVK 217          
BLAST of EWM29075.1 vs. NCBI_GenBank
Match: gi|676494768|ref|XP_009066670.1| (hypothetical protein LOTGIDRAFT_229868 [Lottia gigantea] >gi|556094227|gb|ESO82880.1| hypothetical protein LOTGIDRAFT_229868 [Lottia gigantea])

HSP 1 Score: 83.5741 bits (205), Expect = 2.447e-15
Identity = 51/144 (35.42%), Postives = 78/144 (54.17%), Query Frame = 0
Query:  122 LEILLAFILGSALDLDHFIAARSFWGLQGVLHLSHRPPGHCLTSLLTLTACVWTLAHYIQGPQQGGTEPSVHARGTCGCCNQGFLLQNGQRLSLLFMSAALSHQLRDALRHGLWFCHLGFSTAPLSFHVYILLTMTLPLVIRRL 265
            + +L++F++  ++DLDHF+AA+S + +Q  L LS RPP H  T ++ L A  W + + +                          L   + L LLF+S+  SH +RD  R GLWF  LG ST P+ +++YI+L + LPL IR L
Sbjct:   90 VSLLMSFVVAVSIDLDHFLAAKSLF-IQDALSLSERPPFHASTIVIILAATCWLIGYILH-------------------------LHCSKILGLLFLSSGFSHHIRDGWRRGLWFPPLG-STQPIPYNLYIVLILILPLFIRYL 206          
BLAST of EWM29075.1 vs. NCBI_GenBank
Match: gi|826461858|ref|XP_012534367.1| (PREDICTED: transmembrane protein C5orf28 [Monomorium pharaonis])

HSP 1 Score: 80.4925 bits (197), Expect = 2.169e-14
Identity = 52/151 (34.44%), Postives = 75/151 (49.67%), Query Frame = 0
Query:  116 PAHKPCLEILLAFILGSALDLDHFIAARSFWGLQGVLHLSHRPPGHCLTSLLTLTACVWTLAHYIQGPQQGGTEPSVHARGTCGCCNQGFLLQNGQRLSLLFMSAALSHQLRDALRHGLWFCHLGFSTAPLSFHVYILLTMTLPLVIRRLL 266
            P  +    I   F+L S +DLDHFIAARS W +    HL  RP  HC T  + L     +LA+  Q P                           +R S + ++A LSH +RD  R GLWFC  G ST+P+ +++Y+ L M+LP +++ L+
Sbjct:   61 PIARNLNSIFSCFVLASFIDLDHFIAARS-WHIHDATHLQKRPFLHCTTIPILLWMLFISLANTFQSPLL-------------------------ERTSWIILAAFLSHHIRDGTRRGLWFCPFG-STSPIPYYLYVSLCMSLPYILQWLM 184          
BLAST of EWM29075.1 vs. NCBI_GenBank
Match: gi|759073045|ref|XP_011346157.1| (PREDICTED: transmembrane protein 267 [Ooceraea biroi] >gi|607355181|gb|EZA49773.1| hypothetical protein X777_11645 [Ooceraea biroi])

HSP 1 Score: 75.485 bits (184), Expect = 1.606e-12
Identity = 51/157 (32.48%), Postives = 76/157 (48.41%), Query Frame = 0
Query:  123 EILLAFILGSALDLDHFIAARSFWGLQGVLHLSHRPPGHCLTSLLTLTACVWTLAHYIQGPQQGGTEPSVHARGTCGCCNQGFLLQNGQRLSLLFMSAALSHQLRDALRHGLWFCHLGFSTAPLSFHVYILLTMTLPLVIRRLLAKRGGEAERGEGP 279
             I   F+L S +DLDHFIAARS W +    HL  RP  HC T  + L A   +L++    P                           ++ S + ++A LSH +RD  R GLWFC  G ST P+ +++Y+ L M+LP  +  L++      ++ +GP
Sbjct:   71 SIFSCFLLASFIDLDHFIAARS-WHIHDATHLQKRPFLHCTTIPIMLWALFISLSNAFHSPVL-------------------------EQTSWVILAAFLSHHIRDGTRRGLWFCPFG-STRPIPYYLYVSLCMSLPYALHWLMSLH-TFVQKSDGP 199          
BLAST of EWM29075.1 vs. NCBI_GenBank
Match: gi|1070598233|ref|XP_018396388.1| (PREDICTED: transmembrane protein C5orf28 isoform X2 [Cyphomyrmex costatus])

HSP 1 Score: 75.0998 bits (183), Expect = 2.299e-12
Identity = 49/145 (33.79%), Postives = 71/145 (48.97%), Query Frame = 0
Query:  123 EILLAFILGSALDLDHFIAARSFWGLQGVLHLSHRPPGHCLTSLLTLTACVWTLAHYIQGPQQGGTEPSVHARGTCGCCNQGFLLQNGQRLSLLFMSAALSHQLRDALRHGLWFCHLGFSTAPLSFHVYILLTMTLPLVIRRLLA 267
             I   F+L S +DLDHFIAARS W +    HL  RP  HC T  L L      L++    P                           + +S + ++A LSH +RD  R GLWFC  G ST P+ +++Y+ L+M+LP ++  L++
Sbjct:   71 SIFSCFLLASFVDLDHFIAARS-WHIHDATHLQKRPFLHCTTIPLLLWTFFILLSNTFHSPLM-------------------------EHISWVILAAFLSHHIRDGTRRGLWFCPFG-STRPIPYYLYVSLSMSLPYILHWLMS 188          
BLAST of EWM29075.1 vs. NCBI_GenBank
Match: gi|1068407123|ref|XP_018050487.1| (PREDICTED: transmembrane protein C5orf28 isoform X1 [Atta colombica] >gi|1009355780|gb|KYM81083.1| Transmembrane protein C5orf28 [Atta colombica])

HSP 1 Score: 74.3294 bits (181), Expect = 3.495e-12
Identity = 61/207 (29.47%), Postives = 88/207 (42.51%), Query Frame = 0
Query:   61 LRLLLDNFTHATLASMVWWTVLAPPAPWPPAFSRPRPLPLPLYHEHRHLLPRPGHPAHKPCLEILLAFILGSALDLDHFIAARSFWGLQGVLHLSHRPPGHCLTSLLTLTACVWTLAHYIQGPQQGGTEPSVHARGTCGCCNQGFLLQNGQRLSLLFMSAALSHQLRDALRHGLWFCHLGFSTAPLSFHVYILLTMTLPLVIRRLLA 267
            +R  LDN THAT+  + W  ++          S  R L                         IL  F+L S +DLDHFIAARS W +    HL  RP  HC T  + L      L++    P                           + +S + ++A LSH +RD  R GLWFC  G ST P+ +++Y+ L M+LP ++  L++
Sbjct:   37 VRAALDNATHATVGGLTWMLIIVLSRK-----SIVRNLN-----------------------SILSCFLLASFVDLDHFIAARS-WHIHDATHLQKRPFLHCTTIPILLWTFFILLSNTFHSPLM-------------------------EHISWVMLAAFLSHHIRDGTRRGLWFCPFG-STRPIPYYLYVSLCMSLPYILHWLMS 188          
BLAST of EWM29075.1 vs. NCBI_GenBank
Match: gi|1153815731|ref|XP_020283771.1| (transmembrane protein 267 [Pseudomyrmex gracilis])

HSP 1 Score: 73.1738 bits (178), Expect = 1.169e-11
Identity = 60/206 (29.13%), Postives = 85/206 (41.26%), Query Frame = 0
Query:   62 RLLLDNFTHATLASMVWWTVLAPPAPWPPAFSRPRPLPLPLYHEHRHLLPRPGHPAHKPCLEILLAFILGSALDLDHFIAARSFWGLQGVLHLSHRPPGHCLTSLLTLTACVWTLAHYIQGPQQGGTEPSVHARGTCGCCNQGFLLQNGQRLSLLFMSAALSHQLRDALRHGLWFCHLGFSTAPLSFHVYILLTMTLPLVIRRLLA 267
            R L DN THAT+  + W  ++                          +L R   P  +    +   F+L S +D+DHFIAARS W +    HL  RP  HC T  + L     +L+     P    T                         S L ++A LSH +RD  R GLWFC  G ST P+ +++Y+ L M LP  +  L++
Sbjct:   39 RALFDNMTHATVGGLTWMLIV--------------------------ILSRK--PVARNLTSVFSCFLLASLIDVDHFIAARS-WHIHDATHLQKRPFLHCTTIPILLWILFISLSSIFHSPVLEHT-------------------------SWLILAAFLSHHIRDGTRRGLWFCPFG-STRPIPYYLYLSLCMFLPYALYWLMS 189          
BLAST of EWM29075.1 vs. NCBI_GenBank
Match: gi|1070171087|ref|XP_018362615.1| (PREDICTED: transmembrane protein C5orf28 [Trachymyrmex cornetzi])

HSP 1 Score: 72.7886 bits (177), Expect = 1.206e-11
Identity = 48/145 (33.10%), Postives = 70/145 (48.28%), Query Frame = 0
Query:  123 EILLAFILGSALDLDHFIAARSFWGLQGVLHLSHRPPGHCLTSLLTLTACVWTLAHYIQGPQQGGTEPSVHARGTCGCCNQGFLLQNGQRLSLLFMSAALSHQLRDALRHGLWFCHLGFSTAPLSFHVYILLTMTLPLVIRRLLA 267
             I   F+L S +DLDHFIAARS W +    HL  RP  HC T  + L      L++    P                           + +S + ++A LSH +RD  R GLWFC  G ST P+ +++Y+ L M+LP ++  L++
Sbjct:   71 SIFSCFLLASFVDLDHFIAARS-WHIHDATHLQKRPFLHCTTIPILLWTFFILLSNTFHSPLM-------------------------EHISWVILAAFLSHHIRDGTRRGLWFCPFG-STRPIPYYLYVSLCMSLPYILHWLMS 188          
BLAST of EWM29075.1 vs. NCBI_GenBank
Match: gi|751218988|ref|XP_011162560.1| (PREDICTED: transmembrane protein C5orf28 [Solenopsis invicta])

HSP 1 Score: 71.2478 bits (173), Expect = 4.347e-11
Identity = 49/144 (34.03%), Postives = 69/144 (47.92%), Query Frame = 0
Query:  123 EILLAFILGSALDLDHFIAARSFWGLQGVLHLSHRPPGHCLTSLLTLTACVWTLAHYIQGPQQGGTEPSVHARGTCGCCNQGFLLQNGQRLSLLFMSAALSHQLRDALRHGLWFCHLGFSTAPLSFHVYILLTMTLPLVIRRLL 266
             I   F+L S +DLDHFIAARS W +    HL  RP  HC T  + L     +L++    P    T                         S + ++A LSH +RD  R GLWFC  G ST P+ +++Y+ L M+LP ++  L+
Sbjct:   68 SIFSCFLLASFIDLDHFIAARS-WHIHDATHLQKRPFLHCTTIPILLWILFISLSNVFHSPLLEHT-------------------------SWVILAAFLSHHIRDGTRRGLWFCPFG-STHPIPYYLYVSLCMSLPYILHWLM 184          
The following BLAST results are available for this feature:
BLAST of EWM29075.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111594|gb|EWM29075.1|0.000e+0100.00hypothetical protein Naga_100024g6 [Nannochloropsi... [more]
gi|961121424|ref|XP_014782630.1|6.639e-1833.20PREDICTED: transmembrane protein C5orf28 homolog [... [more]
gi|676494768|ref|XP_009066670.1|2.447e-1535.42hypothetical protein LOTGIDRAFT_229868 [Lottia gig... [more]
gi|826461858|ref|XP_012534367.1|2.169e-1434.44PREDICTED: transmembrane protein C5orf28 [Monomori... [more]
gi|759073045|ref|XP_011346157.1|1.606e-1232.48PREDICTED: transmembrane protein 267 [Ooceraea bir... [more]
gi|1070598233|ref|XP_018396388.1|2.299e-1233.79PREDICTED: transmembrane protein C5orf28 isoform X... [more]
gi|1068407123|ref|XP_018050487.1|3.495e-1229.47PREDICTED: transmembrane protein C5orf28 isoform X... [more]
gi|1153815731|ref|XP_020283771.1|1.169e-1129.13transmembrane protein 267 [Pseudomyrmex gracilis][more]
gi|1070171087|ref|XP_018362615.1|1.206e-1133.10PREDICTED: transmembrane protein C5orf28 [Trachymy... [more]
gi|751218988|ref|XP_011162560.1|4.347e-1134.03PREDICTED: transmembrane protein C5orf28 [Solenops... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1627rna1627Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications