rna1625, rna1625 (mRNA) Nannochloropsis gaditana

Overview
Namerna1625
Unique Namerna1625
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1446
Alignment locationCM002457.1:1090790..1092980 -

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Properties
Property NameValue
ProductPeptidase aspartic
Orig transcript idgnl|cribi|Naga_100024g9.4310.mrna
Orig protein idgnl|cribi|Naga_100024g9.4310
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1090790..1092980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100024g9gene1562Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29052.1cds1621Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1625rna1625-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1625 ID=rna1625|Name=rna1625|organism=Nannochloropsis gaditana|type=mRNA|length=1446bp
GAAGCCTTCTCCGTTGGTTATCATCCATTAAATGGCATGTTTGGGCTCCT
TTTGGCGCCTCGGTCCGCACAGAAAATTCACGTCGTGACCGATATCTTTG
TTACACCAATATAGGTGAGAGATGGCTTTAAATTCCTGCCTGTTTCATCG
TAGGTCGATGCGGAGTACGAAGGCCTTCCACCCACTACCAGCAGCATCAA
GTAGGCACCGCCATTGTGCTACCCTGCTTTTTTGCTCCTTCCTTCTCCTA
GATATCGTCTCCCCTGTCTTTTCATTTCATTTCAATACCTTTCCCTTGCT
AAATGCGGGGCGGATAAGAGGCAGCGTTGGTGCCATGACTCCTTTCGGAC
AAAGTTCAACTCGCCCGTCCATATCGAGCCCTGTTGTCCTCCATGCGCGG
CGGCGGCGGAAAGGTGACTCAGATGCGGATTTTGAACGGTTCAATTTGGA
TGAGCTGCGTGATGAGAAGCGGTTCGAGGAAGTTGAAGAGATGGACCCCG
AAATGTTTCGGCCTTCAAAGATGGAGTATTACGTTCCTCCTCCAGTTGAC
GATATCGAGCACTGGGATATGACCGACACGCGATATGTTGCCGTCGGCCT
CGACAAGGACGGGGACGAAGTGTTTCACGAACAAAGGCTTCCCAACTGCT
ATTTGCATTTGGCATGGGCGCGGCGGTCGTACTTGGATGAGCGGAGCCCT
GTGAGTGTATGGTGGGACTATGCCTTGGTCCGAGACGACCTCCAGGGGAA
CAGGGGTAATCTTTTCGGTATGAACGCCTCTTCGCCCTCGTTGGTCAAAG
CTTTTGTGGAGCTGGATCCGTACAAGAAATTGGGCGTGTACAAGAGCCTG
ACGGGTTATCACTGGAGGCCTTTGAAGGAGCCCGACCTTCTCTACGCCCC
GCGTCTGCAATTTGCGCTGATTGGGTTGGACAAGGAGGGGGCGCTGCCCG
TGCGCATGCAGACTCGCGAGGCTCATCTCGCCTATATGCGGAAGTCGAAG
CGCATCGTGACCGCAGGTCCCTTGTTCAGCCTCGATGCTGAGGAGGGTAG
TCCGGTGGGGTCGCTGGTCATTTTCAACGCGGAAAATTTGGAGGAAGCGG
GAGCCTTTATCCAGAACGATCCATACGCGAAAGCCGGCTTATTCAAGGAG
AGCTTTTTGACTCAAGTCGCTGAGCTGGACGTGACGGGGCAACATTTGGA
TCGCGAATGGGAGAAGTATCAACTAGAGGAGAACCACTACGACCCCGTGC
ATGACTTGATGGTGGGATGGGGCCTGGTCAAGGAGGACTAAGCAAGTCAA
GGGGGACAGTGCGAGGGCGAATCAAAAATAAATGATAGCATTCTTGAAAG
AAGACGAGAAATTGCAAGAAAAGCTCGTAAAGTTAACCCTTTTTCATGCT
TGGAGCGATCTCTTTATCCACCTTGTTCCCGGGAGGCACAGCGTCA
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protein sequence of rna1625

>rna1625-protein ID=rna1625-protein|Name=rna1625|organism=Nannochloropsis gaditana|type=polypeptide|length=647bp
MPRIKFFSTPLLTIYFALQAFQRSSSLIIPLERRQPAASVSPFFPLSQDK
SSSSGTIPTHLQAFVPGLPAYFARLSFGNDAQAIDVLVDTGSFDLLIPSD
LCTACSHVSQRLNVASAGVDFVHCGDAMRCHGQCMPDVLNSFGSTSQTIP
PQLYCGPHGGICEAGSNLCLFDDNYADGSYASGVVVTAPSVNFSGVTLKD
VTFGAIASASDTFFEAPQGGGIMGMAYRGSAVSTRANARGNLDQPVTKKD
VVGCDGETPCMVPLLDALIAQQEQGVGGQVRDIFAIYGHPTSPVMLLGES
SLGIESQEYYEGELQYARMEAPYGLYMVGVAGLGVVEAPGMDVPKGVAEA
GSTFMLHQGNAGLAIIDTGATGLYFPCSAYLKLKTYLQTHYCHVPFICGP
LPTPTPELSDSEAAAVKGKQQERDHSHRALRSRRHHRHHQQPSQEEAQEE
DEPPPSTIFESNIWAKYDEATVARLPTLTIRLEDGGIELRLSPQQYLIRN
VMLSGVTGMDGQEKTDIAYYQFGIRTFGEGVAGGSQRRRMVSDQASRKSE
RGPEAFQREKYEGMLPGTSITRDGTHRGSVRPNKNNGSPRELYILGELLL
NQMFVVFDRDKRRVGFAPAAARDPSLKPSSPEFVVVPPGNGTANTNV
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mRNA from alignment at CM002457.1:1090790..1092980-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1625 ID=rna1625|Name=rna1625|organism=Nannochloropsis gaditana|type=mRNA|length=2191bp|location=Sequence derived from alignment at CM002457.1:1090790..1092980- (Nannochloropsis gaditana)
GGACGGTGTTGTGGACGGCGGTGGGTCGCAAGCGCCGGACTGACTTCTCA
GCCTGGCTTTCTTCGTGCTGTAATATTTCCTTCGTCGACGTGATTGTGGG
CTGCTTAAATGCCACGAATAAAATTTTTTTCTACGCCCCTTCTGACCATA
TATTTTGCCCTTCAAGCCTTTCAACGGTCTTCTTCTTTGATAATACCTCT
GGAAAGACGTCAACCTGCGGCATCAGTGTCTCCCTTCTTTCCTCTTTCAC
AAGACAAAAGTTCTTCGTCAGGAACTATTCCAACGCACCTCCAAGCTTTT
GTTCCTGGACTGCCGGCCTATTTCGCGCGCCTTTCGTTCGGCAATGACGC
CCAAGCCATCGACGTCCTAGTTGACACGGGAAGTTTCGACCTGCTTATCC
CGTCCGACCTTTGCACAGCCTGTTCGCACGTCTCACAACGCCTAAACGTG
GCCTCTGCAGGCGTGGATTTTGTCCATTGCGGCGACGCTATGCGCTGCCA
TGGGCAATGCATGCCTGATGTGCTGAATTCATTTGGTAGCACAAGCCAGA
CTATCCCCCCACAGCTCTATTGCGGGCCGCACGGAGGGATCTGTGAGGCA
GGAAGCAACCTCTGTCTTTTCGATGATAACTATGCAGATGGATCCTACGC
TAGCGGTGTGGTTGTCACTGCCCCTTCCGTAAATTTCTCGGGCGTGACGC
TGAAAGACGTGACGTTCGGGGCCATTGCATCGGCAAGCGATACCTTTTTC
GAAGCTCCCCAGGGCGGAGGGATTATGGGGATGGCCTATCGAGGCTCGGC
GGTCAGTACCAGGGCCAACGCGCGGGGCAATTTAGATCAGCCTGTAACCA
AGAAAGATGTTGTCGGTTGTGACGGGGAAACCCCGTGTATGGTGCCCCTC
TTGGATGCTCTGATTGCACAGCAGGAGCAGGGGGTGGGTGGTCAAGTCCG
GGATATTTTTGCGATTTATGGCCATCCAACCTCGCCGGTGATGCTTCTGG
GTGAGAGCAGCCTAGGAATAGAATCCCAAGAATACTACGAGGGAGAGCTA
CAGTATGCTCGTATGGAGGCCCCCTATGGACTCTACATGGTGGGGGTTGC
CGGGCTGGGGGTGGTGGAAGCGCCGGGGATGGACGTGCCCAAAGGAGTAG
CGGAGGCGGGCTCCACATTCATGCTCCATCAAGGGAACGCCGGTCTGGCC
ATCATTGATACGGGCGCCACGGGGTTATATTTCCCTTGCTCGGCATATCT
CAAGCTCAAGACGTATCTGCAGACGCACTACTGTCATGTCCCCTTCATTT
GTGGGCCCCTGCCGACGCCCACCCCCGAACTTTCTGACAGCGAGGCCGCA
GCCGTCAAGGGAAAGCAGCAAGAGAGGGATCATTCACATCGAGCCCTTCG
GAGTCGCCGCCACCATCGCCATCACCAACAGCCTTCCCAGGAGGAGGCGC
AGGAAGAGGATGAGCCCCCCCCCTCGACGATCTTCGAGTCCAACATATGG
GCCAAGTACGACGAGGCTACCGTGGCGCGCTTGCCGACACTGACCATTCG
CTTGGAAGATGGGGGAATTGAGCTACGCTTGTCGCCGCAACAGTACTTGA
TACGGAATGTCATGCTGAGCGGGGTGACGGGGATGGACGGACAAGAAAAG
ACGGACATTGCTTATTACCAGTTTGGTATCAGGACATTCGGAGAAGGCGT
TGCGGGTGGATCGCAAAGGAGGCGCATGGTCTCTGATCAAGCCAGTAGGA
AATCTGAGCGCGGTCCAGAGGCTTTTCAGCGCGAAAAATACGAAGGGATG
CTGCCGGGCACGAGCATTACAAGAGATGGCACTCACAGAGGGTCCGTCCG
CCCCAACAAAAACAATGGATCCCCCCGGGAGCTATATATTTTGGGTGAAT
TGCTCTTGAACCAAATGTTTGTCGTCTTCGATAGAGATAAGAGACGGGTG
GGGTTCGCTCCCGCAGCTGCTCGCGATCCATCGCTCAAACCCTCATCTCC
AGAGTTCGTGGTCGTTCCGCCGGGCAATGGGACGGCAAATACAAATGTGT
AAAGCAACATGCCTAGTCAAAGCCAAAAGAATATATAAGGACAGCGAAAA
TCTCTTCAGCCAGGATGGTGACGCTGTGCCTCCCGGGAACAAGGTGGATA
AAGAGATCGCTCCAAGCATGAAAAAGGGTTAACTTTACGAG
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Coding sequence (CDS) from alignment at CM002457.1:1090790..1092980-

>rna1625 ID=rna1625|Name=rna1625|organism=Nannochloropsis gaditana|type=CDS|length=1944bp|location=Sequence derived from alignment at CM002457.1:1090790..1092980- (Nannochloropsis gaditana)
ATGCCACGAATAAAATTTTTTTCTACGCCCCTTCTGACCATATATTTTGC
CCTTCAAGCCTTTCAACGGTCTTCTTCTTTGATAATACCTCTGGAAAGAC
GTCAACCTGCGGCATCAGTGTCTCCCTTCTTTCCTCTTTCACAAGACAAA
AGTTCTTCGTCAGGAACTATTCCAACGCACCTCCAAGCTTTTGTTCCTGG
ACTGCCGGCCTATTTCGCGCGCCTTTCGTTCGGCAATGACGCCCAAGCCA
TCGACGTCCTAGTTGACACGGGAAGTTTCGACCTGCTTATCCCGTCCGAC
CTTTGCACAGCCTGTTCGCACGTCTCACAACGCCTAAACGTGGCCTCTGC
AGGCGTGGATTTTGTCCATTGCGGCGACGCTATGCGCTGCCATGGGCAAT
GCATGCCTGATGTGCTGAATTCATTTGGTAGCACAAGCCAGACTATCCCC
CCACAGCTCTATTGCGGGCCGCACGGAGGGATCTGTGAGGCAGGAAGCAA
CCTCTGTCTTTTCGATGATAACTATGCAGATGGATCCTACGCTAGCGGTG
TGGTTGTCACTGCCCCTTCCGTAAATTTCTCGGGCGTGACGCTGAAAGAC
GTGACGTTCGGGGCCATTGCATCGGCAAGCGATACCTTTTTCGAAGCTCC
CCAGGGCGGAGGGATTATGGGGATGGCCTATCGAGGCTCGGCGGTCAGTA
CCAGGGCCAACGCGCGGGGCAATTTAGATCAGCCTGTAACCAAGAAAGAT
GTTGTCGGTTGTGACGGGGAAACCCCGTGTATGGTGCCCCTCTTGGATGC
TCTGATTGCACAGCAGGAGCAGGGGGTGGGTGGTCAAGTCCGGGATATTT
TTGCGATTTATGGCCATCCAACCTCGCCGGTGATGCTTCTGGGTGAGAGC
AGCCTAGGAATAGAATCCCAAGAATACTACGAGGGAGAGCTACAGTATGC
TCGTATGGAGGCCCCCTATGGACTCTACATGGTGGGGGTTGCCGGGCTGG
GGGTGGTGGAAGCGCCGGGGATGGACGTGCCCAAAGGAGTAGCGGAGGCG
GGCTCCACATTCATGCTCCATCAAGGGAACGCCGGTCTGGCCATCATTGA
TACGGGCGCCACGGGGTTATATTTCCCTTGCTCGGCATATCTCAAGCTCA
AGACGTATCTGCAGACGCACTACTGTCATGTCCCCTTCATTTGTGGGCCC
CTGCCGACGCCCACCCCCGAACTTTCTGACAGCGAGGCCGCAGCCGTCAA
GGGAAAGCAGCAAGAGAGGGATCATTCACATCGAGCCCTTCGGAGTCGCC
GCCACCATCGCCATCACCAACAGCCTTCCCAGGAGGAGGCGCAGGAAGAG
GATGAGCCCCCCCCCTCGACGATCTTCGAGTCCAACATATGGGCCAAGTA
CGACGAGGCTACCGTGGCGCGCTTGCCGACACTGACCATTCGCTTGGAAG
ATGGGGGAATTGAGCTACGCTTGTCGCCGCAACAGTACTTGATACGGAAT
GTCATGCTGAGCGGGGTGACGGGGATGGACGGACAAGAAAAGACGGACAT
TGCTTATTACCAGTTTGGTATCAGGACATTCGGAGAAGGCGTTGCGGGTG
GATCGCAAAGGAGGCGCATGGTCTCTGATCAAGCCAGTAGGAAATCTGAG
CGCGGTCCAGAGGCTTTTCAGCGCGAAAAATACGAAGGGATGCTGCCGGG
CACGAGCATTACAAGAGATGGCACTCACAGAGGGTCCGTCCGCCCCAACA
AAAACAATGGATCCCCCCGGGAGCTATATATTTTGGGTGAATTGCTCTTG
AACCAAATGTTTGTCGTCTTCGATAGAGATAAGAGACGGGTGGGGTTCGC
TCCCGCAGCTGCTCGCGATCCATCGCTCAAACCCTCATCTCCAGAGTTCG
TGGTCGTTCCGCCGGGCAATGGGACGGCAAATACAAATGTGTAA
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Synonyms
Publications