rna1624, rna1624 (mRNA) Nannochloropsis gaditana

Overview
Namerna1624
Unique Namerna1624
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2004
Alignment locationCM002457.1:1089417..1090862 +

Link to JBrowse

Properties
Property NameValue
Productycii-like protein
Orig transcript idgnl|cribi|Naga_100024g10.4352.mrna
Orig protein idgnl|cribi|Naga_100024g10.4352
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1089417..1090862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100024g10gene1561Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1624rna1624-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29094.1cds1620Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1624 ID=rna1624|Name=rna1624|organism=Nannochloropsis gaditana|type=mRNA|length=2004bp
ATGGCTGTCCACTGGTTTGCGAAGCTCCTGCTGCGGAGGCGGCTGTCTTC
ATCCTTCTTTTTGTCGGCGTGCGTGATGCTTCTGGCGCTGCAGTCTTCAA
CTGCAGTACCAGTCTCGCTTCCATCTTGGGCTACCGCGCTTCAAGAGTGT
GTTTATGAACGCCAACGTCAGCTACAAGGCCAAATATTTGGGGTAGATGA
CTTTGTCGCACTGCGTGATAAGCTCATCTCAGAAATCCTGCTTTGGGGAA
AATCCACGCCCGAAGTGATGCAGACTCGATTAGCCTACCCATATTTTGCC
TTCCTGCCCAATCTCAAGGGCATAATTAGTACGACATCTGCCCCATCCAT
GGAGCCCGCCATTACCCCTACCATGTCGCCGGGCATGGACGGAGTATCCG
GGCGCAGCGTGCACGGAGAAGAAGCTAGTACAAGCACAGGCATGAACTGG
ACACATCCTGTATCTCTGCGAGTCCAGGGGGGCTGCTTTGAATCTACGGC
CTTCAGGTACTATGCCGGGACCCGACAAGTGGAAATTGATGCGGGTCGCC
CCTCCTCCCCCGGGTGCAGTGATTTCTACATGCTGGCTACGACTAGTTCC
TTCCACCTCGAGCACGTGACAAGACGGGGCCGGTACTTGGTCGAATGGCC
CTTGCCCGCCGATCAATCTGACGCAGAGCGTTGGGACGAGGCGGCGAAAG
GCATCCGAGTCTTCCTGTTCGCCACGACGGTGGAGGAAACCTGGCAGAGC
GTTTTCCAGACGGCGGCTTTATTCGAGCCCGTTTTGACCCAAGACGTAAG
TGAGAGGGCAGCGGCACGCAATGCCAAGTTTTTGAAGGACTACGCGGGTT
TCGTCTTTGAAAAATTAGAGTCAAATGGGCCCGCGGAGGAGGAGGAGGTA
TCTGTGCAGGTGGAGAGGCGGAGAATGCTGGAGGATGACGAAGGCACACA
CAAAGTGCCTTTGCGGCTCCGGACAAGAGAAGCTGAGGCGCTCACTTCTC
CCCTTTTGGCCATCCCCTTGCGCGAGTTCGGTCAGGGCAGGGCGGCTGTC
ATCGAGGAGTCGGAGGTCGGAAACGGCGATTTGTTTGGTGTCCTGCGCAT
GGACGGTCTGGACCCTATGCTGGCTTGGGGTATGGGAGCAACCACCGGGC
ACATGACCACGGCCCTGTGGATGGCGACAGGGGAGGGGGACGCGGAAGAA
GAAGCCTTGTACATAGTGGAGAGCCAGGTCAAGAGCAGTTATTGGCCGCA
AAACAATGTCCAGCGGACACCGTTTCGGCAGTGGATGCAGTGGGCGGACG
CCGCGGGATACAACGTGCTGTACGTGCCTTTGAGCGACGAGGCTCGGGCC
GCCTTCGACGTGGAGAAAGCCCGGGCCTGGTTCCGAGAGATGGAGGGACT
GGCCTATGGCTACCACTCCCTTCTCTGGGGATGGGTGGACACGGAGCGAG
AGAACTACCCTTGCCTTCCCCCCGGCTTTGACCGGTGTCTGGAGTGGGCC
TTTTTGGAGGTGGCCTTCGCCCTGATCGACAGGCACGTGCCGGCCATCGC
CACCTTGCTCTGGAGCGAGGCATTCAATAAGCGCGTGGGAACGGAGGGAC
TTACCACCTCCGAGGTCTGGATGCGGGCGAACCTGTCCCTGTCCCTGCCC
TCCTCGGCGGTGCCGGGCATAGTGGAGGAGGACGTGTGGTTGTACCACAC
GTCACGGGAGAGGAGGGAGGGAGGGAGGGAGGAAGTCTTGGGGCGGGCCA
TGGTGTGCTGTGTCTTTGTGTGTGGGATCTGGAAGGCGGCCGGGTTGTTT
GGGGAGGCGTCGGAGGAGATTAACTGCGGAGAACTGACCAATGCCGACGA
CGTGATGCTGGCGCTCTTCCGCGGGGACATGCGGCAGATATTGGGGAAGT
GGAAAATGTTTCTGCCGTCGTTTAATTTCAAAAAGCCGTTTCCTCACATG
GACGAGAAATGCCCGAGTTTGGGCCCGGCGTATCAACAGCCTCTGGACTG
CTAG
back to top

protein sequence of rna1624

>rna1624-protein ID=rna1624-protein|Name=rna1624|organism=Nannochloropsis gaditana|type=polypeptide|length=389bp
MALNSCLFHRRSMRSTKAFHPLPAASSRHRHCATLLFCSFLLLDIVSPVF
SFHFNTFPLLNAGRIRGSVGAMTPFGQSSTRPSISSPVVLHARRRRKGDS
DADFERFNLDELRDEKRFEEVEEMDPEMFRPSKMEYYVPPPVDDIEHWDM
TDTRYVAVGLDKDGDEVFHEQRLPNCYLHLAWARRSYLDERSPVSVWWDY
ALVRDDLQGNRGNLFGMNASSPSLVKAFVELDPYKKLGVYKSLTGYHWRP
LKEPDLLYAPRLQFALIGLDKEGALPVRMQTREAHLAYMRKSKRIVTAGP
LFSLDAEEGSPVGSLVIFNAENLEEAGAFIQNDPYAKAGLFKESFLTQVA
ELDVTGQHLDREWEKYQLEENHYDPVHDLMVGWGLVKED
back to top

mRNA from alignment at CM002457.1:1089417..1090862+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1624 ID=rna1624|Name=rna1624|organism=Nannochloropsis gaditana|type=mRNA|length=1446bp|location=Sequence derived from alignment at CM002457.1:1089417..1090862+ (Nannochloropsis gaditana)
GAAGCCTTCTCCGTTGGTTATCATCCATTAAATGGCATGTTTGGGCTCCT
TTTGGCGCCTCGGTCCGCACAGAAAATTCACGTCGTGACCGATATCTTTG
TTACACCAATATAGGTGAGAGATGGCTTTAAATTCCTGCCTGTTTCATCG
TAGGTCGATGCGGAGTACGAAGGCCTTCCACCCACTACCAGCAGCATCAA
GTAGGCACCGCCATTGTGCTACCCTGCTTttttgctccttccttctccta
gATATCGTCTCCCCTGTCTTTTCATTTCATTTCAATACCTTTCCCTTGCT
AAATGCGGGGCGGATAAGAGGCAGCGTTGGTGCCATGACTCCTTTCGGAC
AAAGTTCAACTCGCCCGTCCATATCGAGCCCTGTTGTCCTCCAtgcgcgg
cggcggcggaaaggTGACTCAGATGCGGATTTTGAACGGTTCAATTTGGA
TGAGCTGCGTGATGAGAAGCGGTTCGAGGAAGTTGAAGAGATGGACCCCG
AAATGTTTCGGCCTTCAAAGATGGAGTATTAcgttcctcctccagttGAC
GATATCGAGCACTGGGATATGACCGACACGCGATATGTTGCCGTCGGCCT
CGacaaggacggggacgaagTGTTTCACGAACAAAGGCTTCCCAACTGCT
ATTTGCATTTGGCATGGGCGCGGCGGTCGTACTTGGATGAGCGGAGCCCT
GTGAGTGTATGGTGGGACTATGCCTTGGTCCGAGACGACCTCCAGGGGAA
CAGGGGTAATCTTTTCGGTATGAAcgcctcttcgccctcgttGGTCAAAG
CTTTTGTGGAGCTGGATCCGTACAAGAAATTGGGCGTGTACAAGAGCCTG
ACGGGTTATCACTGGAGGCCTTTGAAGGAGCCCGACCTTCTCTACGCCCC
GCGTCTGCAATTTGCGCTGATTGGgttggacaaggagggggcgctGCCCG
TGCGCATGCAGACTCGCGAGGCTCATCTCGCCTATATGCGGAAGTCGAAG
CGCATCGTGACCGCAGGTCCCTTGTTCAGCCTCGATGCTGAGGAGGGTAG
TCCGGTGGGGTCGCTGGTCATTTTCAACGCGGAAAatttggaggaagcgg
gagccTTTATCCAGAACGATCCATACGCGAAAGCCGGCTTATTCAAGGAG
AGCTTTTTGACTCAAGTCGCTGAGCTGGACGTGACGGGGCAACATTTGGA
TCGCGAATGGGAGAAGTATCAACTAGAGGAGAACCACTACGACCCCGTGC
ATGACTTGATGGTGGGATGGGGCCTGGTCAAGGAGGACTAAGCAAGTCAA
GGGGGACAGTGCGAGGGCGAATCAAAAATAAATGATAGCATTCTTgaaag
aagacgagaaaTTGCAAGAAAAGCTCGTAAAGTTAACCCTTTTTCATGCT
TGGAGCGATCTCTTTATCCACCTTGTTCCCGGGAGGCACAGCGTCA
back to top

Coding sequence (CDS) from alignment at CM002457.1:1089417..1090862+

>rna1624 ID=rna1624|Name=rna1624|organism=Nannochloropsis gaditana|type=CDS|length=1170bp|location=Sequence derived from alignment at CM002457.1:1089417..1090862+ (Nannochloropsis gaditana)
ATGGCTTTAAATTCCTGCCTGTTTCATCGTAGGTCGATGCGGAGTACGAA
GGCCTTCCACCCACTACCAGCAGCATCAAGTAGGCACCGCCATTGTGCTA
CCCTGCTTttttgctccttccttctcctagATATCGTCTCCCCTGTCTTT
TCATTTCATTTCAATACCTTTCCCTTGCTAAATGCGGGGCGGATAAGAGG
CAGCGTTGGTGCCATGACTCCTTTCGGACAAAGTTCAACTCGCCCGTCCA
TATCGAGCCCTGTTGTCCTCCAtgcgcggcggcggcggaaaggTGACTCA
GATGCGGATTTTGAACGGTTCAATTTGGATGAGCTGCGTGATGAGAAGCG
GTTCGAGGAAGTTGAAGAGATGGACCCCGAAATGTTTCGGCCTTCAAAGA
TGGAGTATTAcgttcctcctccagttGACGATATCGAGCACTGGGATATG
ACCGACACGCGATATGTTGCCGTCGGCCTCGacaaggacggggacgaagT
GTTTCACGAACAAAGGCTTCCCAACTGCTATTTGCATTTGGCATGGGCGC
GGCGGTCGTACTTGGATGAGCGGAGCCCTGTGAGTGTATGGTGGGACTAT
GCCTTGGTCCGAGACGACCTCCAGGGGAACAGGGGTAATCTTTTCGGTAT
GAAcgcctcttcgccctcgttGGTCAAAGCTTTTGTGGAGCTGGATCCGT
ACAAGAAATTGGGCGTGTACAAGAGCCTGACGGGTTATCACTGGAGGCCT
TTGAAGGAGCCCGACCTTCTCTACGCCCCGCGTCTGCAATTTGCGCTGAT
TGGgttggacaaggagggggcgctGCCCGTGCGCATGCAGACTCGCGAGG
CTCATCTCGCCTATATGCGGAAGTCGAAGCGCATCGTGACCGCAGGTCCC
TTGTTCAGCCTCGATGCTGAGGAGGGTAGTCCGGTGGGGTCGCTGGTCAT
TTTCAACGCGGAAAatttggaggaagcgggagccTTTATCCAGAACGATC
CATACGCGAAAGCCGGCTTATTCAAGGAGAGCTTTTTGACTCAAGTCGCT
GAGCTGGACGTGACGGGGCAACATTTGGATCGCGAATGGGAGAAGTATCA
ACTAGAGGAGAACCACTACGACCCCGTGCATGACTTGATGGTGGGATGGG
GCCTGGTCAAGGAGGACTAA
back to top
Synonyms
Publications