EWM29094.1, cds1620 (CDS) Nannochloropsis gaditana

Overview
NameEWM29094.1
Unique Namecds1620
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1089538..1090707 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29094.1
Productycii-like protein
Orig transcript idgnl|cribi|Naga_100024g10.4352.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1089538..1090707 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR011008Dimeric_a/b-barrel
IPR005545YCII
Homology
BLAST of EWM29094.1 vs. NCBI_GenBank
Match: gi|585111613|gb|EWM29094.1| (ycii-like protein [Nannochloropsis gaditana])

HSP 1 Score: 806.209 bits (2081), Expect = 0.000e+0
Identity = 389/389 (100.00%), Postives = 389/389 (100.00%), Query Frame = 0
Query:    1 MALNSCLFHRRSMRSTKAFHPLPAASSRHRHCATLLFCSFLLLDIVSPVFSFHFNTFPLLNAGRIRGSVGAMTPFGQSSTRPSISSPVVLHARRRRKGDSDADFERFNLDELRDEKRFEEVEEMDPEMFRPSKMEYYVPPPVDDIEHWDMTDTRYVAVGLDKDGDEVFHEQRLPNCYLHLAWARRSYLDERSPVSVWWDYALVRDDLQGNRGNLFGMNASSPSLVKAFVELDPYKKLGVYKSLTGYHWRPLKEPDLLYAPRLQFALIGLDKEGALPVRMQTREAHLAYMRKSKRIVTAGPLFSLDAEEGSPVGSLVIFNAENLEEAGAFIQNDPYAKAGLFKESFLTQVAELDVTGQHLDREWEKYQLEENHYDPVHDLMVGWGLVKED 389
            MALNSCLFHRRSMRSTKAFHPLPAASSRHRHCATLLFCSFLLLDIVSPVFSFHFNTFPLLNAGRIRGSVGAMTPFGQSSTRPSISSPVVLHARRRRKGDSDADFERFNLDELRDEKRFEEVEEMDPEMFRPSKMEYYVPPPVDDIEHWDMTDTRYVAVGLDKDGDEVFHEQRLPNCYLHLAWARRSYLDERSPVSVWWDYALVRDDLQGNRGNLFGMNASSPSLVKAFVELDPYKKLGVYKSLTGYHWRPLKEPDLLYAPRLQFALIGLDKEGALPVRMQTREAHLAYMRKSKRIVTAGPLFSLDAEEGSPVGSLVIFNAENLEEAGAFIQNDPYAKAGLFKESFLTQVAELDVTGQHLDREWEKYQLEENHYDPVHDLMVGWGLVKED
Sbjct:    1 MALNSCLFHRRSMRSTKAFHPLPAASSRHRHCATLLFCSFLLLDIVSPVFSFHFNTFPLLNAGRIRGSVGAMTPFGQSSTRPSISSPVVLHARRRRKGDSDADFERFNLDELRDEKRFEEVEEMDPEMFRPSKMEYYVPPPVDDIEHWDMTDTRYVAVGLDKDGDEVFHEQRLPNCYLHLAWARRSYLDERSPVSVWWDYALVRDDLQGNRGNLFGMNASSPSLVKAFVELDPYKKLGVYKSLTGYHWRPLKEPDLLYAPRLQFALIGLDKEGALPVRMQTREAHLAYMRKSKRIVTAGPLFSLDAEEGSPVGSLVIFNAENLEEAGAFIQNDPYAKAGLFKESFLTQVAELDVTGQHLDREWEKYQLEENHYDPVHDLMVGWGLVKED 389          
BLAST of EWM29094.1 vs. NCBI_GenBank
Match: gi|299116606|emb|CBN76233.1| (COG2350: Uncharacterized protein conserved in bacteria [Ectocarpus siliculosus])

HSP 1 Score: 98.2117 bits (243), Expect = 9.792e-19
Identity = 68/246 (27.64%), Postives = 120/246 (48.78%), Query Frame = 0
Query:  161 DKDGDEVFHEQRLPNCYLHLAWAR---RSYLDE-RSPVSVWWDYALVRDDLQGNRGNLFGMNASSPSLVKAFVELDPYKKLGVYKSLT----------GYHWRPLKEPDLLYAPRLQFALIGLDKEGALPVRMQTREAHLAYMRKSKRIVTAGPLFSLDAEEGSP----VGSLVIFNAENLEEAGAFIQNDPYAKAGLFKESFLTQVAELDVTGQHLDREWEKYQLEENHYDPVHDLMVGWGLVKE 388
            D+D + V    R    + H+ WAR   R++ D+      + W+ +++        GN+F + + +       +E DPY+K G++ +++          G++W         +     +  + +DK+G+  +R +  +AHL Y  +++R +  GP+ S D  E SP    VGSL+ FNA N EEA    + DP+ +AGL+   F+ +  E+D++G  L R         N  DP+ D+M   GL +E
Sbjct:  195 DEDKNYVTWGVRAKAHWEHVKWARIAKRTFEDDPDREAGILWNRSVLSPSKCRVIGNMFCIRSYTKEGALRLLEEDPYRKSGLFGTVSLYRYPYNMGGGFNW---------HLSNFPYLALCMDKKGSAKLREKNNDAHLEYYERTRRCIGEGPVLSSDLAEDSPRNKPVGSLMFFNAINDEEARETAEGDPFNQAGLYDSVFVARFNEIDLSGIGLVR--------ANRIDPMRDMMAKEGLDRE 423          
BLAST of EWM29094.1 vs. NCBI_GenBank
Match: gi|873227394|emb|CEM18694.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 94.3597 bits (233), Expect = 2.727e-17
Identity = 64/239 (26.78%), Postives = 106/239 (44.35%), Query Frame = 0
Query:  154 RYVAVGLDKDGDEVFHEQRLPNCYLHLAWARRSYLDERSPVSVWWDYALVRDDLQGNRGNLFGMNASSPSLVKAFVELDPYKKLGVYKSLTGYHWRPLKEPDLL---YAPRLQFALIGLDKE-GALPVRMQTREAHLAYMRKSKRIVTAGPLFS--LDAEE----------------------------GSPVGSLVIFNAENLEEAGAFIQNDPYAKAGLFKESFLTQVAELDVTGQH 358
            +++ V LDK G E ++  R P    H+ WAR S     +   V WD  +  +  +   GNL  + A +    K F E +PY   G+Y+    + W  + +  L+   +     F + G D +  A  +R Q  E H  Y+ +   +V +G L     D++E                             +PVG + I   ++LE+A  + + DP+ +AGL+K  F+ QV  LD+TG+H
Sbjct:  219 KFLVVALDKPGFEWYNYGRHPQMVDHIVWARLSLRLRNATAKVLWDMTIYNETSRHGCGNLINIAAPTLKHAKEFAEKNPYFSSGLYRHHEIFEWHDIADEHLMMGAWKGEDTFLVFGKDSDLTAAKIREQLEEKHHRYLCRCANVVHSGSLKPPRQDSQEELDRPVKQIVPLIWQLKGPNPVGAMPNNETPVGEMSIITCDSLEQAKDYARRDPFTRAGLYKNLFVAQVVHLDITGRH 457          
BLAST of EWM29094.1 vs. NCBI_GenBank
Match: gi|746727728|ref|WP_039685048.1| (hypothetical protein [Tateyamaria sp. ANG-S1] >gi|742738697|gb|KIC49760.1| hypothetical protein RA29_08905 [Tateyamaria sp. ANG-S1])

HSP 1 Score: 79.7221 bits (195), Expect = 5.737e-15
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = 0
Query:  264 FALIGLDKEGALPVRMQTREAHLAYMRKSKRIVTAGPLFSLDAEEGSPVGSLVIFNAENLEEAGAFIQNDPYAKAGLFKE 343
            FAL+  DKEGAL VRM+ R AHL Y+  +  +  AGP       EG+P GSL++ +  ++E A ++  NDPYAKAGLF++
Sbjct:    3 FALMAFDKEGALDVRMENRPAHLEYLDSTGVVKQAGPFLD---GEGNPCGSLIVLDVADMEAAQSWADNDPYAKAGLFRD 79          
BLAST of EWM29094.1 vs. NCBI_GenBank
Match: gi|1011300824|ref|WP_062218028.1| (hypothetical protein [Celeribacter marinus] >gi|937544921|gb|ALI55689.1| YciL protein [Celeribacter marinus] >gi|1097186733|emb|SFK26200.1| hypothetical protein SAMN05444421_102293 [Celeribacter marinus])

HSP 1 Score: 79.7221 bits (195), Expect = 5.972e-15
Identity = 43/88 (48.86%), Postives = 54/88 (61.36%), Query Frame = 0
Query:  262 LQFALIGLDKEGALPVRMQTREAHLAYMRKSKRIVTAGPLFSLDAEEGSPVGSLVIFNAENLEEAGAFIQNDPYAKAGLFKESFLTQV 349
            ++FAL   DK GALP+R   R+AHL+Y+  S  +  AGP      E G   GSLVI N + ++ A A+  NDPYAKAGLF ES   QV
Sbjct:    1 MKFALFCKDKSGALPIRKANRDAHLSYIDDSGVVDQAGPFLD---EAGEMCGSLVILNVDTMDAAQAWASNDPYAKAGLF-ESVSIQV 84          
BLAST of EWM29094.1 vs. NCBI_GenBank
Match: gi|492825789|ref|WP_005979743.1| (hypothetical protein [Ruegeria lacuscaerulensis] >gi|260415759|gb|EEX09018.1| YCII-related domain superfamily protein [Silicibacter lacuscaerulensis ITI-1157] >gi|1109898225|emb|SHJ88736.1| hypothetical protein SAMN05444404_2873 [Silicibacter lacuscaerulensis ITI-1157])

HSP 1 Score: 79.7221 bits (195), Expect = 6.066e-15
Identity = 41/78 (52.56%), Postives = 51/78 (65.38%), Query Frame = 0
Query:  265 ALIGLDKEGALPVRMQTREAHLAYMRKSKRIVTAGPLFSLDAEEGSPVGSLVIFNAENLEEAGAFIQNDPYAKAGLFK 342
            ALI  DK+GAL  R+  R AHLAY+ ++  +  AGPL   DA     +GSLVI + E+L  A A+  NDPYAKAGLFK
Sbjct:    4 ALIARDKDGALQTRLDNRAAHLAYIEETGVVAQAGPLLDGDAM----IGSLVILDVEDLSAAQAWADNDPYAKAGLFK 77          
BLAST of EWM29094.1 vs. NCBI_GenBank
Match: gi|223993829|ref|XP_002286598.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977913|gb|EED96239.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 85.1149 bits (209), Expect = 1.071e-14
Identity = 65/231 (28.14%), Postives = 112/231 (48.48%), Query Frame = 0
Query:  168 FHEQRLPNCYLHLAWARRSYL-----DERSPVSVWWDYALVRDDLQGNRGNLFGMNASSPSLVKAFVELDPYKK--LGV-------YKSLTGYHWRPLKEPDLLY---APRLQFALIGLDKEGALP--VRMQTREAHLAYMRKSKRIVTAGPLFSLDAEEGSP----VGSLVIFNAENLEEAGAFIQNDPYAKAGLFKESFLTQVAELDVTGQHLDR-----EWEKYQLEE 370
             H+ R+     H+ WAR+  L     +  S   V W + L+  DLQ   G++  +++ +    +  +  DP  +  LGV         S+  Y WR +++  L        L   L+  D+  A+   +R +    HL Y+ +S+R++ AGPL     E+  P    VG+L+++NA++ E A  F++NDP A AGL++   + +   LDVTG+ +       E   YQ++E
Sbjct:  115 MHKDRVALTEDHVMWARKQNLYNDTFNMESMADVLWSHQLLSSDLQRTIGHVMCIDSPTIQHCRDALSNDPIVRSLLGVDSNGLCDASSIPLYRWRHIRDHTLRRDDGRDGLPNMLLAFDRPEAMSRGLRDEISNEHLEYLIRSERVIAAGPLHVATEEKSDPKSVAVGTLMLYNAKDREHAVEFVENDPAALAGLYESMTVHRYNSLDVTGKFVSENLYFPEQNTYQMKE 345          
BLAST of EWM29094.1 vs. NCBI_GenBank
Match: gi|951445142|ref|WP_057817605.1| (hypothetical protein [Roseovarius indicus] >gi|950101090|gb|KRS16881.1| hypothetical protein XM52_16815 [Roseovarius indicus] >gi|1099515278|emb|SFD74473.1| hypothetical protein SAMN04488031_102217 [Roseovarius indicus])

HSP 1 Score: 78.5666 bits (192), Expect = 1.405e-14
Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = 0
Query:  265 ALIGLDKEGALPVRMQTREAHLAYMRKSKRIVTAGPLFSLDAEEGSPVGSLVIFNAENLEEAGAFIQNDPYAKAGLFK 342
            ALI  DK GAL +R + RE HLAY++++  +  AGPL     ++G+  GSLVI + E++  A A+ +NDPYAKAGLF+
Sbjct:    4 ALIARDKPGALEIRTENREKHLAYLKETGVVSQAGPLL---GDDGNMCGSLVILDVEDMAAAEAWAENDPYAKAGLFE 78          
BLAST of EWM29094.1 vs. NCBI_GenBank
Match: gi|1134292428|ref|WP_076532724.1| (hypothetical protein [Gemmobacter megaterium] >gi|1131874973|emb|SIT14600.1| hypothetical protein SAMN05421774_106175 [Gemmobacter megaterium])

HSP 1 Score: 78.1814 bits (191), Expect = 1.786e-14
Identity = 47/102 (46.08%), Postives = 56/102 (54.90%), Query Frame = 0
Query:  264 FALIGLDKEGALPVRMQTREAHLAYMRKSKRIVTAGPLFSLDAEEGSPVGSLVIFNAENLEEAGAFIQNDPYAKAGLFKESFLTQVAELDVTGQHLDREWEK 365
            FAL  LDK GAL +R+  R AHL ++  S ++V AGP    D    +PVGSLV+  A +  EA AF   DPYAKAGLF           DVT     REW K
Sbjct:    3 FALTCLDKPGALQIRLDNRAAHLDFLNASGKVVFAGPFIEAD----TPVGSLVVIEAADRTEAEAFATADPYAKAGLFH----------DVT----IREWRK 86          
BLAST of EWM29094.1 vs. NCBI_GenBank
Match: gi|1032637202|ref|WP_064259538.1| (hypothetical protein [Roseovarius indicus] >gi|1032134093|gb|OAO06114.1| hypothetical protein A8B76_04075 [Roseovarius indicus])

HSP 1 Score: 78.1814 bits (191), Expect = 1.954e-14
Identity = 38/77 (49.35%), Postives = 53/77 (68.83%), Query Frame = 0
Query:  265 ALIGLDKEGALPVRMQTREAHLAYMRKSKRIVTAGPLFSLDAEEGSPVGSLVIFNAENLEEAGAFIQNDPYAKAGLF 341
            ALI  DK GAL +R + RE HLAY++++  +  AGPL     ++G+  GSLVI + E++  A A+ +NDPYAKAGLF
Sbjct:    4 ALIARDKPGALEIRTENREKHLAYLKETGVVSQAGPLL---GDDGNMCGSLVILDVEDMAAAEAWAENDPYAKAGLF 77          
The following BLAST results are available for this feature:
BLAST of EWM29094.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111613|gb|EWM29094.1|0.000e+0100.00ycii-like protein [Nannochloropsis gaditana][more]
gi|299116606|emb|CBN76233.1|9.792e-1927.64COG2350: Uncharacterized protein conserved in bact... [more]
gi|873227394|emb|CEM18694.1|2.727e-1726.78unnamed protein product [Vitrella brassicaformis C... [more]
gi|746727728|ref|WP_039685048.1|5.737e-1547.50hypothetical protein [Tateyamaria sp. ANG-S1] >gi|... [more]
gi|1011300824|ref|WP_062218028.1|5.972e-1548.86hypothetical protein [Celeribacter marinus] >gi|93... [more]
gi|492825789|ref|WP_005979743.1|6.066e-1552.56hypothetical protein [Ruegeria lacuscaerulensis] >... [more]
gi|223993829|ref|XP_002286598.1|1.071e-1428.14predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|951445142|ref|WP_057817605.1|1.405e-1448.72hypothetical protein [Roseovarius indicus] >gi|950... [more]
gi|1134292428|ref|WP_076532724.1|1.786e-1446.08hypothetical protein [Gemmobacter megaterium] >gi|... [more]
gi|1032637202|ref|WP_064259538.1|1.954e-1449.35hypothetical protein [Roseovarius indicus] >gi|103... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1624rna1624Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications