EWM29094.1, cds1620 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29094.1 vs. NCBI_GenBank
Match: gi|585111613|gb|EWM29094.1| (ycii-like protein [Nannochloropsis gaditana]) HSP 1 Score: 806.209 bits (2081), Expect = 0.000e+0 Identity = 389/389 (100.00%), Postives = 389/389 (100.00%), Query Frame = 0 Query: 1 MALNSCLFHRRSMRSTKAFHPLPAASSRHRHCATLLFCSFLLLDIVSPVFSFHFNTFPLLNAGRIRGSVGAMTPFGQSSTRPSISSPVVLHARRRRKGDSDADFERFNLDELRDEKRFEEVEEMDPEMFRPSKMEYYVPPPVDDIEHWDMTDTRYVAVGLDKDGDEVFHEQRLPNCYLHLAWARRSYLDERSPVSVWWDYALVRDDLQGNRGNLFGMNASSPSLVKAFVELDPYKKLGVYKSLTGYHWRPLKEPDLLYAPRLQFALIGLDKEGALPVRMQTREAHLAYMRKSKRIVTAGPLFSLDAEEGSPVGSLVIFNAENLEEAGAFIQNDPYAKAGLFKESFLTQVAELDVTGQHLDREWEKYQLEENHYDPVHDLMVGWGLVKED 389 MALNSCLFHRRSMRSTKAFHPLPAASSRHRHCATLLFCSFLLLDIVSPVFSFHFNTFPLLNAGRIRGSVGAMTPFGQSSTRPSISSPVVLHARRRRKGDSDADFERFNLDELRDEKRFEEVEEMDPEMFRPSKMEYYVPPPVDDIEHWDMTDTRYVAVGLDKDGDEVFHEQRLPNCYLHLAWARRSYLDERSPVSVWWDYALVRDDLQGNRGNLFGMNASSPSLVKAFVELDPYKKLGVYKSLTGYHWRPLKEPDLLYAPRLQFALIGLDKEGALPVRMQTREAHLAYMRKSKRIVTAGPLFSLDAEEGSPVGSLVIFNAENLEEAGAFIQNDPYAKAGLFKESFLTQVAELDVTGQHLDREWEKYQLEENHYDPVHDLMVGWGLVKED Sbjct: 1 MALNSCLFHRRSMRSTKAFHPLPAASSRHRHCATLLFCSFLLLDIVSPVFSFHFNTFPLLNAGRIRGSVGAMTPFGQSSTRPSISSPVVLHARRRRKGDSDADFERFNLDELRDEKRFEEVEEMDPEMFRPSKMEYYVPPPVDDIEHWDMTDTRYVAVGLDKDGDEVFHEQRLPNCYLHLAWARRSYLDERSPVSVWWDYALVRDDLQGNRGNLFGMNASSPSLVKAFVELDPYKKLGVYKSLTGYHWRPLKEPDLLYAPRLQFALIGLDKEGALPVRMQTREAHLAYMRKSKRIVTAGPLFSLDAEEGSPVGSLVIFNAENLEEAGAFIQNDPYAKAGLFKESFLTQVAELDVTGQHLDREWEKYQLEENHYDPVHDLMVGWGLVKED 389
BLAST of EWM29094.1 vs. NCBI_GenBank
Match: gi|299116606|emb|CBN76233.1| (COG2350: Uncharacterized protein conserved in bacteria [Ectocarpus siliculosus]) HSP 1 Score: 98.2117 bits (243), Expect = 9.792e-19 Identity = 68/246 (27.64%), Postives = 120/246 (48.78%), Query Frame = 0 Query: 161 DKDGDEVFHEQRLPNCYLHLAWAR---RSYLDE-RSPVSVWWDYALVRDDLQGNRGNLFGMNASSPSLVKAFVELDPYKKLGVYKSLT----------GYHWRPLKEPDLLYAPRLQFALIGLDKEGALPVRMQTREAHLAYMRKSKRIVTAGPLFSLDAEEGSP----VGSLVIFNAENLEEAGAFIQNDPYAKAGLFKESFLTQVAELDVTGQHLDREWEKYQLEENHYDPVHDLMVGWGLVKE 388 D+D + V R + H+ WAR R++ D+ + W+ +++ GN+F + + + +E DPY+K G++ +++ G++W + + + +DK+G+ +R + +AHL Y +++R + GP+ S D E SP VGSL+ FNA N EEA + DP+ +AGL+ F+ + E+D++G L R N DP+ D+M GL +E Sbjct: 195 DEDKNYVTWGVRAKAHWEHVKWARIAKRTFEDDPDREAGILWNRSVLSPSKCRVIGNMFCIRSYTKEGALRLLEEDPYRKSGLFGTVSLYRYPYNMGGGFNW---------HLSNFPYLALCMDKKGSAKLREKNNDAHLEYYERTRRCIGEGPVLSSDLAEDSPRNKPVGSLMFFNAINDEEARETAEGDPFNQAGLYDSVFVARFNEIDLSGIGLVR--------ANRIDPMRDMMAKEGLDRE 423
BLAST of EWM29094.1 vs. NCBI_GenBank
Match: gi|873227394|emb|CEM18694.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 94.3597 bits (233), Expect = 2.727e-17 Identity = 64/239 (26.78%), Postives = 106/239 (44.35%), Query Frame = 0 Query: 154 RYVAVGLDKDGDEVFHEQRLPNCYLHLAWARRSYLDERSPVSVWWDYALVRDDLQGNRGNLFGMNASSPSLVKAFVELDPYKKLGVYKSLTGYHWRPLKEPDLL---YAPRLQFALIGLDKE-GALPVRMQTREAHLAYMRKSKRIVTAGPLFS--LDAEE----------------------------GSPVGSLVIFNAENLEEAGAFIQNDPYAKAGLFKESFLTQVAELDVTGQH 358 +++ V LDK G E ++ R P H+ WAR S + V WD + + + GNL + A + K F E +PY G+Y+ + W + + L+ + F + G D + A +R Q E H Y+ + +V +G L D++E +PVG + I ++LE+A + + DP+ +AGL+K F+ QV LD+TG+H Sbjct: 219 KFLVVALDKPGFEWYNYGRHPQMVDHIVWARLSLRLRNATAKVLWDMTIYNETSRHGCGNLINIAAPTLKHAKEFAEKNPYFSSGLYRHHEIFEWHDIADEHLMMGAWKGEDTFLVFGKDSDLTAAKIREQLEEKHHRYLCRCANVVHSGSLKPPRQDSQEELDRPVKQIVPLIWQLKGPNPVGAMPNNETPVGEMSIITCDSLEQAKDYARRDPFTRAGLYKNLFVAQVVHLDITGRH 457
BLAST of EWM29094.1 vs. NCBI_GenBank
Match: gi|746727728|ref|WP_039685048.1| (hypothetical protein [Tateyamaria sp. ANG-S1] >gi|742738697|gb|KIC49760.1| hypothetical protein RA29_08905 [Tateyamaria sp. ANG-S1]) HSP 1 Score: 79.7221 bits (195), Expect = 5.737e-15 Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = 0 Query: 264 FALIGLDKEGALPVRMQTREAHLAYMRKSKRIVTAGPLFSLDAEEGSPVGSLVIFNAENLEEAGAFIQNDPYAKAGLFKE 343 FAL+ DKEGAL VRM+ R AHL Y+ + + AGP EG+P GSL++ + ++E A ++ NDPYAKAGLF++ Sbjct: 3 FALMAFDKEGALDVRMENRPAHLEYLDSTGVVKQAGPFLD---GEGNPCGSLIVLDVADMEAAQSWADNDPYAKAGLFRD 79
BLAST of EWM29094.1 vs. NCBI_GenBank
Match: gi|1011300824|ref|WP_062218028.1| (hypothetical protein [Celeribacter marinus] >gi|937544921|gb|ALI55689.1| YciL protein [Celeribacter marinus] >gi|1097186733|emb|SFK26200.1| hypothetical protein SAMN05444421_102293 [Celeribacter marinus]) HSP 1 Score: 79.7221 bits (195), Expect = 5.972e-15 Identity = 43/88 (48.86%), Postives = 54/88 (61.36%), Query Frame = 0 Query: 262 LQFALIGLDKEGALPVRMQTREAHLAYMRKSKRIVTAGPLFSLDAEEGSPVGSLVIFNAENLEEAGAFIQNDPYAKAGLFKESFLTQV 349 ++FAL DK GALP+R R+AHL+Y+ S + AGP E G GSLVI N + ++ A A+ NDPYAKAGLF ES QV Sbjct: 1 MKFALFCKDKSGALPIRKANRDAHLSYIDDSGVVDQAGPFLD---EAGEMCGSLVILNVDTMDAAQAWASNDPYAKAGLF-ESVSIQV 84
BLAST of EWM29094.1 vs. NCBI_GenBank
Match: gi|492825789|ref|WP_005979743.1| (hypothetical protein [Ruegeria lacuscaerulensis] >gi|260415759|gb|EEX09018.1| YCII-related domain superfamily protein [Silicibacter lacuscaerulensis ITI-1157] >gi|1109898225|emb|SHJ88736.1| hypothetical protein SAMN05444404_2873 [Silicibacter lacuscaerulensis ITI-1157]) HSP 1 Score: 79.7221 bits (195), Expect = 6.066e-15 Identity = 41/78 (52.56%), Postives = 51/78 (65.38%), Query Frame = 0 Query: 265 ALIGLDKEGALPVRMQTREAHLAYMRKSKRIVTAGPLFSLDAEEGSPVGSLVIFNAENLEEAGAFIQNDPYAKAGLFK 342 ALI DK+GAL R+ R AHLAY+ ++ + AGPL DA +GSLVI + E+L A A+ NDPYAKAGLFK Sbjct: 4 ALIARDKDGALQTRLDNRAAHLAYIEETGVVAQAGPLLDGDAM----IGSLVILDVEDLSAAQAWADNDPYAKAGLFK 77
BLAST of EWM29094.1 vs. NCBI_GenBank
Match: gi|223993829|ref|XP_002286598.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977913|gb|EED96239.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 85.1149 bits (209), Expect = 1.071e-14 Identity = 65/231 (28.14%), Postives = 112/231 (48.48%), Query Frame = 0 Query: 168 FHEQRLPNCYLHLAWARRSYL-----DERSPVSVWWDYALVRDDLQGNRGNLFGMNASSPSLVKAFVELDPYKK--LGV-------YKSLTGYHWRPLKEPDLLY---APRLQFALIGLDKEGALP--VRMQTREAHLAYMRKSKRIVTAGPLFSLDAEEGSP----VGSLVIFNAENLEEAGAFIQNDPYAKAGLFKESFLTQVAELDVTGQHLDR-----EWEKYQLEE 370 H+ R+ H+ WAR+ L + S V W + L+ DLQ G++ +++ + + + DP + LGV S+ Y WR +++ L L L+ D+ A+ +R + HL Y+ +S+R++ AGPL E+ P VG+L+++NA++ E A F++NDP A AGL++ + + LDVTG+ + E YQ++E Sbjct: 115 MHKDRVALTEDHVMWARKQNLYNDTFNMESMADVLWSHQLLSSDLQRTIGHVMCIDSPTIQHCRDALSNDPIVRSLLGVDSNGLCDASSIPLYRWRHIRDHTLRRDDGRDGLPNMLLAFDRPEAMSRGLRDEISNEHLEYLIRSERVIAAGPLHVATEEKSDPKSVAVGTLMLYNAKDREHAVEFVENDPAALAGLYESMTVHRYNSLDVTGKFVSENLYFPEQNTYQMKE 345
BLAST of EWM29094.1 vs. NCBI_GenBank
Match: gi|951445142|ref|WP_057817605.1| (hypothetical protein [Roseovarius indicus] >gi|950101090|gb|KRS16881.1| hypothetical protein XM52_16815 [Roseovarius indicus] >gi|1099515278|emb|SFD74473.1| hypothetical protein SAMN04488031_102217 [Roseovarius indicus]) HSP 1 Score: 78.5666 bits (192), Expect = 1.405e-14 Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = 0 Query: 265 ALIGLDKEGALPVRMQTREAHLAYMRKSKRIVTAGPLFSLDAEEGSPVGSLVIFNAENLEEAGAFIQNDPYAKAGLFK 342 ALI DK GAL +R + RE HLAY++++ + AGPL ++G+ GSLVI + E++ A A+ +NDPYAKAGLF+ Sbjct: 4 ALIARDKPGALEIRTENREKHLAYLKETGVVSQAGPLL---GDDGNMCGSLVILDVEDMAAAEAWAENDPYAKAGLFE 78
BLAST of EWM29094.1 vs. NCBI_GenBank
Match: gi|1134292428|ref|WP_076532724.1| (hypothetical protein [Gemmobacter megaterium] >gi|1131874973|emb|SIT14600.1| hypothetical protein SAMN05421774_106175 [Gemmobacter megaterium]) HSP 1 Score: 78.1814 bits (191), Expect = 1.786e-14 Identity = 47/102 (46.08%), Postives = 56/102 (54.90%), Query Frame = 0 Query: 264 FALIGLDKEGALPVRMQTREAHLAYMRKSKRIVTAGPLFSLDAEEGSPVGSLVIFNAENLEEAGAFIQNDPYAKAGLFKESFLTQVAELDVTGQHLDREWEK 365 FAL LDK GAL +R+ R AHL ++ S ++V AGP D +PVGSLV+ A + EA AF DPYAKAGLF DVT REW K Sbjct: 3 FALTCLDKPGALQIRLDNRAAHLDFLNASGKVVFAGPFIEAD----TPVGSLVVIEAADRTEAEAFATADPYAKAGLFH----------DVT----IREWRK 86
BLAST of EWM29094.1 vs. NCBI_GenBank
Match: gi|1032637202|ref|WP_064259538.1| (hypothetical protein [Roseovarius indicus] >gi|1032134093|gb|OAO06114.1| hypothetical protein A8B76_04075 [Roseovarius indicus]) HSP 1 Score: 78.1814 bits (191), Expect = 1.954e-14 Identity = 38/77 (49.35%), Postives = 53/77 (68.83%), Query Frame = 0 Query: 265 ALIGLDKEGALPVRMQTREAHLAYMRKSKRIVTAGPLFSLDAEEGSPVGSLVIFNAENLEEAGAFIQNDPYAKAGLF 341 ALI DK GAL +R + RE HLAY++++ + AGPL ++G+ GSLVI + E++ A A+ +NDPYAKAGLF Sbjct: 4 ALIARDKPGALEIRTENREKHLAYLKETGVVSQAGPLL---GDDGNMCGSLVILDVEDMAAAEAWAENDPYAKAGLF 77 The following BLAST results are available for this feature:
BLAST of EWM29094.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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