rna1621, rna1621 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1621
Unique Name	rna1621
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1911
Alignment location	CM002457.1:1084476..1086876 +

Link to JBrowse

Properties


Property Name	Value
Product	Kinetochore protein Nuf2
Orig transcript id	gnl\|cribi\|Naga_100024g13.4348.mrna
Orig protein id	gnl\|cribi\|Naga_100024g13.4348
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:1084476..1086876 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100024g13	gene1558	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1621	rna1621-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29090.1	cds1617	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:1084476..1086876+
coding sequence from alignment at CM002457.1:1084476..1086876+

mRNA sequence

>rna1621 ID=rna1621|Name=rna1621|organism=Nannochloropsis gaditana|type=mRNA|length=1911bp
ATGCCTTTCTCCTCGACTTCCTCCTCCTCCTCCTCCTCGGCGGCAGCTAT
GATGGCAGCGGCCCAGTCGAACCGTACTCCGGCGGAGGTGGAAGGCTGGC
TGAATAAGAAAGGGCGAATGACTTGGAAAAGACGTTATTTTACATTGCAC
GGCCACATAATCACTTATTACGCAAAGAAAGGGGATGCCAAATGCCGGAA
TCAAATGGCCTTGACCGCGCAGAGCGTATTCTCCTCCTCTTCATCCAAAA
AAAATGGATTTTCCATCGTGACGGCAGGGAAGGGGTTTCAGCTGAACGCA
GAAACCCCTCAAGATAAGCACGCGTGGGCGGTGGCGGTCACGAGCGCCAT
CCGCTCATTGCAAGCACAGCAAGCAGGGAGCGGGGGTATGACAAGCAGCA
GCAGCGGGCGGAGCCTCTCGCGGAGTTCTTCGGGACTGAGGGGGAGGAAG
AATACCAAAATCTTCTATGTGGTCGGCACCGAATTCGTCCTGGATGCCCG
CTACGAGTTGATCAAACCGATCGGTCACGGGGCATATGGGGTGGTCATCT
CGGCGACTGACAACCAGCTTGGCCAGAAGGTGGCGATCAAGAAGTGCCCC
AACGCGTTCGAGGACTTGGTGGACGCCAAGCGCATCGTGCGCGAGATCCG
CTTGCTCATGCATTTTCAGCACGAGAACATTGTCCGGGTGCTGGACCTCC
AGGCCCCGCCCGTGGCAGATTTTGACGACGTGTACATCATCAGCGAGCTG
ATGGACACGGACCTGCACCGTGTCATCTATTCGCGCCAAAAACTCACGGA
CGACCACGTGCAATTCTTCCTCTACCAAATGCTCTGCGCCTTGAAATACA
TCCACTCGGCGAATGTCATCCACCGGGACCTGAAGCCCTCCAACATCCTT
TTGAACTCAAACTGTGACCTGAAGATCTGCGACTTTGGTCTCTCGCGGGG
GGTGATGCCTGTAGGCACCCAAGAAGCAAGCGATTTGACCGAGTATGTGG
TTACGCGCTGGTATAGAGCTCCTGAGATCATGCTGTCATGCCCGGAGTAC
ACCACTGCGATAGACGTATGGGCCGTGGGCTGCATCTTCGGAGAAATGCT
GGGTCGAAAGCCTCTCTTCCCTGGCAATGACTACATCCACCAGCTGAAGC
TCATTACCAAGCTGGTGGGCACACCTTCCGCGGAGGAGCTCGCTTTCGTG
ACCAATCACAAGGCCCGCCGCTTCATGCTGAACCTCCCGAAGGAGCCGCA
GTCCTCGCTGCCCTCCAACCTGAAATCCAAATACCCGGATGCCAGCCCCG
AGGCCCTGTCCCTTCTTCGGAAAATGCTCGTCATCGACCCCGCGAAAAGA
ATAACGGTTGCGGAGGCGCTGGAGCAGCCTTATCTGGCTTCCTTGCATGA
CCCTGTGGTGGAGACCATGGCGGACTCAGACGTGCACTGGGGGGATATTG
AGAGCTGCGAGCTGAGTAAGGTCAATTTGCAGAGACAGATCCTGGAGGAC
ATGATTCGGTTCCACCCCGAAGCCAAACCTTTCCTACGGGATCGGCGGAT
CGCGTGCGGTCTCCCGCCCGAGGAGCGGCAAGGGGAGGGTTCCAGTAGGG
GTACGGGGGCCGGCGTGGCTACGCGTCCTGAGAAAGCGAAGGAGGTAGGA
AAGGTAGGAAGTTTGAAGAGAGAGGGGTCGCTGCGGAAGGGAGAGGAGGG
AGCGAAGTCGATGGTGGACGGCTTGAGCGATAGAGTAGGGGATATGCGCT
TGGGGAACGGATCAAGGAGGGAAGGGGAGAAGAAAGGAGAGGAAGGAGAG
AAGGATGATGGAACGGACGACCACGGGCTAAAGAAGGCGACGATAGGAGG
AACAGAGGCCAAGCTTGCGGCAACGATGGCAACTGGGGTGGTGGGTGGCT
CTAGTCGATGA

protein sequence of rna1621

>rna1621-protein ID=rna1621-protein|Name=rna1621|organism=Nannochloropsis gaditana|type=polypeptide|length=508bp
MSWNDSRQSLGPRASMGPRPSMGPRASLGGRQQSVQAFSFPILKTPDILQ
CMHELQVRLTEAEINEADKHRDAIRRAYEYLVEICTGITKEEMSQPAFSG
INALNYPELHEESIPELAFFRACTKMMTVCGVHDFSMKDLLSPEPKRVRR
HLSAIINFAKFREERLVMYSELAVKRDELLDNLKRLQDEEVGVAKELGVL
REQAAAESEEMEGLEQACEVAEAELEQLNKRQAEIRAQGAELKKQSQDLK
ESIGKASSALESGIEEREKTRGQIVRSPERVRRELASAAEEVETEKKEGL
ATERDAREMHLRVQAVQKGEKEVGKAIKALEEIEGEMAKVKLASKELKDA
TKNVQGNRQRVLEAAQEMENLKRQASRFEDRWTHLRKSGKAKDEALEVAG
KEAQAQLLAVEKVRRAHQQAADESEADVARVTAEVEGEKQENAARCAEMV
EALKSLSETVAEHQQGLREALGDTTNAPLPSAASSTPILSRLSMVAAAAR
KEGSKPVL

mRNA from alignment at CM002457.1:1084476..1086876+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1621 ID=rna1621|Name=rna1621|organism=Nannochloropsis gaditana|type=mRNA|length=2401bp|location=Sequence derived from alignment at CM002457.1:1084476..1086876+ (Nannochloropsis gaditana)
CGCATGCATAGTTAGCAGTTGGACAACCACTGTGAAGGTGTCGTGGTTGC
TGTCTTTGATGCTCGGAAAGCCTAGAATCGATAGGAAGGCAGGCAAGCTG
CCAGAAGGCGGGAATAGGATCTGTGTGCCTGGCCGTGCTCTGCAAGGATT
TTTGTGCGTCATTTCTACTCGCATTGCAAGCGCACTCGCGCATTTTAATG
TCATCAATGCAATGTTATGCAATGGAATTCCTTTATAGTTGACTTTCGCG
GTAGAAGGACCATTCTTTTGGAACTTCGGACGTTCAACCTCATCATCGTT
CTCCTTAACTCTTCACTCATGCCCCGAACTCACTCCTTTATGTCGCACAT
GCACGTTTTTCCACCTAGCACGACCGTGCGTCAAAAATTGGCATGAGTTG
GAACGACTCCCGTCAGAGTCTTGGACCACGTGCGTCCATGGGGCCACGCC
CTAGCATGGGTCCTCGTGCCAGTCTCGGCGGCCGGCAACAGTCAGTGcag
gccttctcctttcctatCCTCAAGACACCCGACATTCTGCAATGCATGCA
TGAGCTGCAGGTGCGgttgacggaggcggagatcaATGAGGCAGATAAGC
ATCGTGACGCCATTCGACGGGCTTATGAGTATTTGGTGGAGATTTGCACA
GGTGCGAGAACCGGGACGATTGCCATTCCACCTTGTTTCCCCAATCCAAT
TCCAGTGCATAATTCTGTCTGTCGCCTTACTGTTGTGCCCAGAACAGCGC
TGTTTATTGGCTACACGCTGGATCCCATCCTAAagtttcttcttcccatc
gcCTTCTATGTTAATGCATCCCTTAGGCATCACCAAAGAAGAAATGAGCC
AGCCGGCCTTCAGTGGCATCAACGCGCTTAACTATCCGGAGCTGCACGAG
GAGTCTATTCCCGAGCTCGCATTCTTCCGGGCGTGCACAAAGATGATGAC
TGTTTGCGGTGTACATGACTTCAGTATGAAAGACTTGCTGTCTCCCGAAC
CTAAGAGGGTCAGACGGCATTTGAGTGCCATCATCAACTTCGCCAAATTC
CGGGAAGAACGTTTGGTCATGTATTCGGAGCTTGCAGTCAAAAGGGATGA
GCTTTTGGACAACCTGAAGCGGttgcaggacgaggaagtgggtGTTGCGA
AAGAGCTGGGCGTCTTGCGGGAGCAAGCCGCggccgagagcgaggaaatg
gaaggattGGAACAAGCGTGCGaagtggcggaggcggaacTGGAGCAATT
GAACAAGCGCCAGGCCGAGATTCGTGCTCAGGGGGCCGAGTTGAAAAAAC
AGAGTCAGGATCTGAAAGAGAGCATTGGGAAGGCCAGCTCGGCCCTGGAA
TCAGGGATCGAGGAACGCGAGAAAACGCGGGGGCAGATCGTGCGGAGTCC
CGAACGGGTCCGGCGCGAATTGGCCAGCGCcgcagaggaagtggagacgg
agaaaaaggaggggctggcgacGGAGCGGGACGCCCGCGAAATGCATCTG
CGGGTACAGGCGGTacagaagggggagaaggaggttgggaaggccatcaa
ggccctggaggagatcgaAGGGGAGATGGCGAAGGTGAAACTGGCGAGCA
AGGAGCTGAAAGACGCGACCAAGAATGTGCAGGGTAACCGGCAAAGGGTG
TTAGAAGCTGCGCAGGAAATGGAGAACTTGAAGCGACAGGCGTCTAGGTT
CGAGGACCGGTGGACCCATCTGCGGAAATCGGGCAAGGCCAAAGACGAGG
CCCTGGAAGtggcaggcaaggaagcgCAGGCACAGCTTTTGGCTGTGGAG
AAGGTCCGGCGCGCCCATCAACAGGCGGCAGATGAGTCGGAGGCAGATGT
AGCGCGCGTGActgcggaggtggagggagaaaagcagGAGAACGCGGCGC
GGTGCGCAGAGATGGTCGAAGCCTTGAAAAGCTTGAGTGAAACGGTTGCG
GAGCATCAGCAAGGCCTCCGGGAAGCGTTGGGGGACACGACCAATGCACC
GTTGCCCTCCGCGGCCAGTAGCACGCCCATTTTGAGCAGGCTGTccatgg
tggcggcggcggccaggaaggaggggtcgaaACCTGTGCTTTGATGCAGG
AATaggagcgagagggcaaggaaCAAGGACGTCAACGGAACGGGCGAGGC
ACATGAGGGATAGCCCAATACATATGCGCGGACAGGAGAACCTGTGTCTC
CGACGTACCAGACGAAAACTATTGGAAGAAGTACACCGGCAAGCGAGCGT
CAGTTCGTGTGGATAAGCGTGGAAACAGAAATCAGAAAGTAAAaagagca
agagaaagggtgaaggtggaggtACGTAAAAAGGAAAGAATACTTGCTGT
AATTTTATGTTAAAGAGAAGCGGGGAAGAACAAGATCAAGCGAGACTCAC
G

Coding sequence (CDS) from alignment at CM002457.1:1084476..1086876+

>rna1621 ID=rna1621|Name=rna1621|organism=Nannochloropsis gaditana|type=CDS|length=3054bp|location=Sequence derived from alignment at CM002457.1:1084476..1086876+ (Nannochloropsis gaditana)
ATGAGTTGGAACGACTCCCGTCAGAGTCTTGGACCACGTGCGTCCATGGG
GCCACGCCCTAGCATGGGTCCTCGTGCCAGTCTCGGCGGCCGGCAACAGT
CAGTGcaggccttctcctttcctatCCTCAAGACACCCGACATTCTGCAA
TGCATGCATGAGCTGCAGGTGCGgttgacggaggcggagatcaATGAGGC
AGATAAGCATCGTGACGCCATTCGACGGGCTTATGAGTATTTGGTGGAGA
TTTGCACAGGCATCACCAAAGAAGAAATGAGCCAGCCGGCCTTCAGTGGC
ATCAACGCGCTTAACTATCCGGAGCTGCACGAGGAGTCTATTCCCGAGCT
CGCATTCTTCCGGGCGTGCACAAAGATGATGACTGTTTGCGGTGTACATG
ACTTCAGTATGAAAGACTTGCTGTCTCCCGAACCTAAGAGGGTCAGACGG
CATTTGAGTGCCATCATCAACTTCGCCAAATTCCGGGAAGAACGTTTGGT
CATGTATTCGGAGCTTGCAGTCAAAAGGGATGAGCTTTTGGACAACCTGA
AGCGGttgcaggacgaggaagtgggtGTTGCGAAAGAGCTGGGCGTCTTG
CGGGAGCAAGCCGCggccgagagcgaggaaatggaaggattGGAACAAGC
GTGCGaagtggcggaggcggaacTGGAGCAATTGAACAAGCGCCAGGCCG
AGATTCGTGCTCAGGGGGCCGAGTTGAAAAAACAGAGTCAGGATCTGAAA
GAGAGCATTGGGAAGGCCAGCTCGGCCCTGGAATCAGGGATCGAGGAACG
CGAGAAAACGCGGGGGCAGATCGTGCGGAGTCCCGAACGGGTCCGGCGCG
AATTGGCCAGCGCcgcagaggaagtggagacggagaaaaaggaggggctg
gcgacGGAGCGGGACGCCCGCGAAATGCATCTGCGGGTACAGGCGGTaca
gaagggggagaaggaggttgggaaggccatcaaggccctggaggagatcg
aAGGGGAGATGGCGAAGGTGAAACTGGCGAGCAAGGAGCTGAAAGACGCG
ACCAAGAATGTGCAGGGTAACCGGCAAAGGGTGTTAGAAGCTGCGCAGGA
AATGGAGAACTTGAAGCGACAGGCGTCTAGGTTCGAGGACCGGTGGACCC
ATCTGCGGAAATCGGGCAAGGCCAAAGACGAGGCCCTGGAAGtggcaggc
aaggaagcgCAGGCACAGCTTTTGGCTGTGGAGAAGGTCCGGCGCGCCCA
TCAACAGGCGGCAGATGAGTCGGAGGCAGATGTAGCGCGCGTGActgcgg
aggtggagggagaaaagcagGAGAACGCGGCGCGGTGCGCAGAGATGGTC
GAAGCCTTGAAAAGCTTGAGTGAAACGGTTGCGGAGCATCAGCAAGGCCT
CCGGGAAGCGTTGGGGGACACGACCAATGCACCGTTGCCCTCCGCGGCCA
GTAGCACGCCCATTTTGAGCAGGCTGTccatggtggcggcggcggccagg
aaggaggggtcgaaACCTGTGCTTTGAATGAGTTGGAACGACTCCCGTCA
GAGTCTTGGACCACGTGCGTCCATGGGGCCACGCCCTAGCATGGGTCCTC
GTGCCAGTCTCGGCGGCCGGCAACAGTCAGTGcaggccttctcctttcct
atCCTCAAGACACCCGACATTCTGCAATGCATGCATGAGCTGCAGGTGCG
gttgacggaggcggagatcaATGAGGCAGATAAGCATCGTGACGCCATTC
GACGGGCTTATGAGTATTTGGTGGAGATTTGCACAGGCATCACCAAAGAA
GAAATGAGCCAGCCGGCCTTCAGTGGCATCAACGCGCTTAACTATCCGGA
GCTGCACGAGGAGTCTATTCCCGAGCTCGCATTCTTCCGGGCGTGCACAA
AGATGATGACTGTTTGCGGTGTACATGACTTCAGTATGAAAGACTTGCTG
TCTCCCGAACCTAAGAGGGTCAGACGGCATTTGAGTGCCATCATCAACTT
CGCCAAATTCCGGGAAGAACGTTTGGTCATGTATTCGGAGCTTGCAGTCA
AAAGGGATGAGCTTTTGGACAACCTGAAGCGGttgcaggacgaggaagtg
ggtGTTGCGAAAGAGCTGGGCGTCTTGCGGGAGCAAGCCGCggccgagag
cgaggaaatggaaggattGGAACAAGCGTGCGaagtggcggaggcggaac
TGGAGCAATTGAACAAGCGCCAGGCCGAGATTCGTGCTCAGGGGGCCGAG
TTGAAAAAACAGAGTCAGGATCTGAAAGAGAGCATTGGGAAGGCCAGCTC
GGCCCTGGAATCAGGGATCGAGGAACGCGAGAAAACGCGGGGGCAGATCG
TGCGGAGTCCCGAACGGGTCCGGCGCGAATTGGCCAGCGCcgcagaggaa
gtggagacggagaaaaaggaggggctggcgacGGAGCGGGACGCCCGCGA
AATGCATCTGCGGGTACAGGCGGTacagaagggggagaaggaggttggga
aggccatcaaggccctggaggagatcgaAGGGGAGATGGCGAAGGTGAAA
CTGGCGAGCAAGGAGCTGAAAGACGCGACCAAGAATGTGCAGGGTAACCG
GCAAAGGGTGTTAGAAGCTGCGCAGGAAATGGAGAACTTGAAGCGACAGG
CGTCTAGGTTCGAGGACCGGTGGACCCATCTGCGGAAATCGGGCAAGGCC
AAAGACGAGGCCCTGGAAGtggcaggcaaggaagcgCAGGCACAGCTTTT
GGCTGTGGAGAAGGTCCGGCGCGCCCATCAACAGGCGGCAGATGAGTCGG
AGGCAGATGTAGCGCGCGTGActgcggaggtggagggagaaaagcagGAG
AACGCGGCGCGGTGCGCAGAGATGGTCGAAGCCTTGAAAAGCTTGAGTGA
AACGGTTGCGGAGCATCAGCAAGGCCTCCGGGAAGCGTTGGGGGACACGA
CCAATGCACCGTTGCCCTCCGCGGCCAGTAGCACGCCCATTTTGAGCAGG
CTGTccatggtggcggcggcggccaggaaggaggggtcgaaACCTGTGCT
TTGA

Synonyms

Publications