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Properties
| Property Name | Value |
|---|
| Product | Protein of unknown function UPF0568 |
| Orig transcript id | gnl|cribi|Naga_100024g15.4339.mrna |
| Orig protein id | gnl|cribi|Naga_100024g15.4339 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:1078938..1080438 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1619 ID=rna1619|Name=rna1619|organism=Nannochloropsis gaditana|type=mRNA|length=777bp
ATGGCTTCGCATCATCTGACCACACAGGAGCATGCCCGCAGAAAGGTAGC
CGTGGTCACTGGCGCGGCAGGTACCCTTGGAGAAAGCATCACCGGCATGC
TCCTGTCAGAGGGATACGTAGTGGCTGCTTTGGACATCCGTGCCGAAGGC
TTGTCAGCTTTTAAAGCCACGTTGGATAAAAAGAGCGACCAGTATCATGC
CTTCGCGGTAGACATCTCGTCAGCCTCCGCAGTTGAAGAAGTCTGCCGCA
CTATCCTCACTCGCCTGGGGGCCGTCTCCGTGCTAATCAATAATGCGGGG
CTACTGTCGAACCATAAATGTGTGCAGACTTCCCTGACGGAGTGGCATCG
GGTCATGCATGTGAACGTGGACGGCGCCTTCCTCCTGTCCCAACAACTGC
TCCCGTGCATGCGGTCGATGCATTTCGGACGTATCGTCAACATCACCTCC
ATGGCCGCCAAGACAGGAGGAGTCACCGCGGGGACAGCCTATGCTGTTAG
CAAGGGTGCTCTGGCTAGTTTGACCTTTTCTTTGGCCCGAGAGACGGCAG
GAGACGGCATCACCGTCAACGGCGTCGCGCCTGCCTACGTGAAAACCCCC
ATGGTCATGCAGCAGCTCCGAGAGGAGCAGCGCGTTCAAGTGTTGAACAG
TATCCCCGTGGGCCGTTTTTGCGAGCCCGAAGAAGTCGCCCACACGGTCC
GCTTCCTGATCTCCCCACTGGCCGGGTTCATCACTGGGGAGATTATTGAT
CAAAATGGAGGTTACCACATGGACTAA back to topprotein sequence of rna1619 >rna1619-protein ID=rna1619-protein|Name=rna1619|organism=Nannochloropsis gaditana|type=polypeptide|length=304bp
MTLSTGGRQRRSAFNTAAGMALSTRKPNEACIFRLLDALEYPALSTFSLD
DPNQVCKAVWYIEDRKIRLYDIEDRKPLRTPGQEWSPALQKYLVDVQCPH
SFEGKWNAVSETARVRVLHWLFVKALAFHYSDMSADAMKMDVAAGTAASI
EANSSGTPMEVEAECAARGEHIPVDFDERVRALSSRLGLPTPSPSSPNHP
TPDPSSLLKTLQGILSIIQLRLSPNAEVATKDGAVARLDIDDFPLSYTTH
DPLVDRAARALTMLYVADLRELQTDINDILVSAQEFTANPYVACLEGGRG
GAWG back to topmRNA from alignment at CM002457.1:1078938..1080438- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1619 ID=rna1619|Name=rna1619|organism=Nannochloropsis gaditana|type=mRNA|length=1501bp|location=Sequence derived from alignment at CM002457.1:1078938..1080438- (Nannochloropsis gaditana)
TGTGGCCTGAGAGTGGCACCTCGCGTCACCCCCTCCGTGCTGTCTCTAGG
GTTGGAAAGGCTTGCTAGCAACTTTTTTTCTCACCCAAACCTCTCAATGC
CTCTCTATGAGGGGCTTATACATCTCATTTTACAAAAATCATGCTCTGGT
GCACTTTTGGTGCTGGATAACACGTTGTCTAATCATGTCCGCGTGGTTTA
CCTGACGGATGCGGCTTTCTCATGACTCTCTCTACAGGAGGGAGGCAGAG
GAGGTCTGCATTTAATACGGCCGCGGGGATGGCTTTATCCACCAGGAAAC
CGAATGAAGCATGTATCTTTCGGCTTTTAGATGCCTTGGAATATCCAGCA
TTATCTACGTTCTCTCTTGATGGTAGGTACACGCGCCTATCCATGCATAT
TTCTGTGTACTTTGTCTAAGCCCGTTCCCTCATTACCGGTCTTTCGGGAC
GTACCTCAAGCTGAAAGCGTATCGCGTTGTGCACTGAAATAATTCAATAT
CTCACAGACCCAAATCAAGTATGCAAGGCCGTGTGGTACATTGAAGATCG
CAAAATACGACTTTATGACATAGAAGATCGCAAACCTCTACGCACGCCTG
GTCAAGAGTGGAGCCCGGCTTTACAAAAATACCTCGTAGATGTGCAATGC
CCACACAGCTTTGAGGGCAAGTGGAACGCCGTATCGGAAACAGCACGTGT
TCGAGTTCTACATTGGTTATTTGTAAAAGCGTTGGCGTTCCATTACTCGG
ACATGTCGGCTGATGCCATGAAAATGGACGTGGCGGCGGGGACCGCCGCA
TCAATAGAAGCCAATTCCTCGGGAACACCCATGGAAGTGGAGGCAGAATG
TGCTGCAAGAGGAGAGCATATTCCAGTCGACTTTGACGAGCGGGTCCGGG
CCTTGTCCTCACGCCTGGGCTTGCCAACCCCCTCTCCTTCTTCACCCAAT
CACCCTACCCCCGACCCGTCCTCCCTTCTCAAAACTCTGCAAGGCATCCT
CTCCATCATCCAGCTCCGCTTGTCTCCCAACGCGGAAGTGGCCACAAAAG
ATGGGGCGGTCGCCCGCCTGGACATCGACGATTTCCCATTGAGCTACACC
ACCCACGACCCCCTTGTCGACCGAGCGGCGCGGGCCCTGACCATGCTGTA
CGTGGCGGATCTCCGGGAGCTACAGACGGACATCAACGACATTTTGGTGT
CTGCCCAGGAGTTTACAGCCAATCCGTACGTAGCATGTTTGGAAGGGGGG
AGGGGCGGGGCGTGGGGGTGAAAAAGCCTGGACAACTTCGCTTTCACAGT
CTTCATTGAACGCTCTCCTCTCTTGTTTTCTTTTTCGTGTGGCACTTCTC
ATAATAGGAAAACCAACACAGCGCTGGGCAGGGTGGGGCGATGAGCAGCA
CCTGAAATCGGGGGGGGGGGGACAGACAGGGTCGAGCAGGTGAGACAGCT
CACGAACCAGACAAAAGCCAGGTTGGAAAAGTAAGCTATCTCAACGTGGG
C back to topCoding sequence (CDS) from alignment at CM002457.1:1078938..1080438- >rna1619 ID=rna1619|Name=rna1619|organism=Nannochloropsis gaditana|type=CDS|length=1830bp|location=Sequence derived from alignment at CM002457.1:1078938..1080438- (Nannochloropsis gaditana)
ACCCAAATCAAGTATGCAAGGCCGTGTGGTACATTGAAGATCGCAAAATA
CGACTTTATGACATAGAAGATCGCAAACCTCTACGCACGCCTGGTCAAGA
GTGGAGCCCGGCTTTACAAAAATACCTCGTAGATGTGCAATGCCCACACA
GCTTTGAGGGCAAGTGGAACGCCGTATCGGAAACAGCACGTGTTCGAGTT
CTACATTGGTTATTTGTAAAAGCGTTGGCGTTCCATTACTCGGACATGTC
GGCTGATGCCATGAAAATGGACGTGGCGGCGGGGACCGCCGCATCAATAG
AAGCCAATTCCTCGGGAACACCCATGGAAGTGGAGGCAGAATGTGCTGCA
AGAGGAGAGCATATTCCAGTCGACTTTGACGAGCGGGTCCGGGCCTTGTC
CTCACGCCTGGGCTTGCCAACCCCCTCTCCTTCTTCACCCAATCACCCTA
CCCCCGACCCGTCCTCCCTTCTCAAAACTCTGCAAGGCATCCTCTCCATC
ATCCAGCTCCGCTTGTCTCCCAACGCGGAAGTGGCCACAAAAGATGGGGC
GGTCGCCCGCCTGGACATCGACGATTTCCCATTGAGCTACACCACCCACG
ACCCCCTTGTCGACCGAGCGGCGCGGGCCCTGACCATGCTGTACGTGGCG
GATCTCCGGGAGCTACAGACGGACATCAACGACATTTTGGTGTCTGCCCA
GGAGTTTACAGCCAATCCGTACGTAGCATGTTTGGAAGGGGGGAGGGGCG
GGGCGTGGGGGTGAATGACTCTCTCTACAGGAGGGAGGCAGAGGAGGTCT
GCATTTAATACGGCCGCGGGGATGGCTTTATCCACCAGGAAACCGAATGA
AGCATGTATCTTTCGGCTTTTAGATGCCTTGGAATATCCAGCATTATCTA
CGTTCTCTCTTGATGACCCAAATCAAGTATGCAAGGCCGTGTGGTACATT
GAAGATCGCAAAATACGACTTTATGACATAGAAGATCGCAAACCTCTACG
CACGCCTGGTCAAGAGTGGAGCCCGGCTTTACAAAAATACCTCGTAGATG
TGCAATGCCCACACAGCTTTGAGGGCAAGTGGAACGCCGTATCGGAAACA
GCACGTGTTCGAGTTCTACATTGGTTATTTGTAAAAGCGTTGGCGTTCCA
TTACTCGGACATGTCGGCTGATGCCATGAAAATGGACGTGGCGGCGGGGA
CCGCCGCATCAATAGAAGCCAATTCCTCGGGAACACCCATGGAAGTGGAG
GCAGAATGTGCTGCAAGAGGAGAGCATATTCCAGTCGACTTTGACGAGCG
GGTCCGGGCCTTGTCCTCACGCCTGGGCTTGCCAACCCCCTCTCCTTCTT
CACCCAATCACCCTACCCCCGACCCGTCCTCCCTTCTCAAAACTCTGCAA
GGCATCCTCTCCATCATCCAGCTCCGCTTGTCTCCCAACGCGGAAGTGGC
CACAAAAGATGGGGCGGTCGCCCGCCTGGACATCGACGATTTCCCATTGA
GCTACACCACCCACGACCCCCTTGTCGACCGAGCGGCGCGGGCCCTGACC
ATGCTGTACGTGGCGGATCTCCGGGAGCTACAGACGGACATCAACGACAT
TTTGGTGTCTGCCCAGGAGTTTACAGCCAATCCGTACGTAGCATGTTTGG
AAGGGGGGAGGGGCGGGGCGTGGGGGTGAATGACTCTCTCTACAGGAGGG
AGGCAGAGGAGGTCTGCATTTAATACGGCCGCGGGGATGGCTTTATCCAC
CAGGAAACCGAATGAAGCATGTATCTTTCGGCTTTTAGATGCCTTGGAAT
ATCCAGCATTATCTACGTTCTCTCTTGATG back to top
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