EWM29081.1, cds1615 (CDS) Nannochloropsis gaditana

Overview
NameEWM29081.1
Unique Namecds1615
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1080067..1080217 -
Alignment locationCM002457.1:1079168..1079931 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29081.1
ProductProtein of unknown function UPF0568
Orig transcript idgnl|cribi|Naga_100024g15.4339.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1080067..1080217 -
CM002457.1supercontigCM002457.1:1079168..1079931 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR019265UPF0568
Homology
BLAST of EWM29081.1 vs. NCBI_GenBank
Match: gi|585111600|gb|EWM29081.1| (Protein of unknown function UPF0568 [Nannochloropsis gaditana])

HSP 1 Score: 629.017 bits (1621), Expect = 0.000e+0
Identity = 304/304 (100.00%), Postives = 304/304 (100.00%), Query Frame = 0
Query:    1 MTLSTGGRQRRSAFNTAAGMALSTRKPNEACIFRLLDALEYPALSTFSLDDPNQVCKAVWYIEDRKIRLYDIEDRKPLRTPGQEWSPALQKYLVDVQCPHSFEGKWNAVSETARVRVLHWLFVKALAFHYSDMSADAMKMDVAAGTAASIEANSSGTPMEVEAECAARGEHIPVDFDERVRALSSRLGLPTPSPSSPNHPTPDPSSLLKTLQGILSIIQLRLSPNAEVATKDGAVARLDIDDFPLSYTTHDPLVDRAARALTMLYVADLRELQTDINDILVSAQEFTANPYVACLEGGRGGAWG 304
            MTLSTGGRQRRSAFNTAAGMALSTRKPNEACIFRLLDALEYPALSTFSLDDPNQVCKAVWYIEDRKIRLYDIEDRKPLRTPGQEWSPALQKYLVDVQCPHSFEGKWNAVSETARVRVLHWLFVKALAFHYSDMSADAMKMDVAAGTAASIEANSSGTPMEVEAECAARGEHIPVDFDERVRALSSRLGLPTPSPSSPNHPTPDPSSLLKTLQGILSIIQLRLSPNAEVATKDGAVARLDIDDFPLSYTTHDPLVDRAARALTMLYVADLRELQTDINDILVSAQEFTANPYVACLEGGRGGAWG
Sbjct:    1 MTLSTGGRQRRSAFNTAAGMALSTRKPNEACIFRLLDALEYPALSTFSLDDPNQVCKAVWYIEDRKIRLYDIEDRKPLRTPGQEWSPALQKYLVDVQCPHSFEGKWNAVSETARVRVLHWLFVKALAFHYSDMSADAMKMDVAAGTAASIEANSSGTPMEVEAECAARGEHIPVDFDERVRALSSRLGLPTPSPSSPNHPTPDPSSLLKTLQGILSIIQLRLSPNAEVATKDGAVARLDIDDFPLSYTTHDPLVDRAARALTMLYVADLRELQTDINDILVSAQEFTANPYVACLEGGRGGAWG 304          
BLAST of EWM29081.1 vs. NCBI_GenBank
Match: gi|470322345|ref|XP_004349212.1| (homeobox prox 1 [Capsaspora owczarzaki ATCC 30864] >gi|765550687|gb|KJE91308.1| homeobox prox 1 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 115.161 bits (287), Expect = 9.593e-27
Identity = 88/281 (31.32%), Postives = 141/281 (50.18%), Query Frame = 0
Query:   34 RLLDALEYPALSTFSLDDPNQVCKAVWYIEDRKIRLYDIEDRKPLR-TPGQEWSPALQKYLVDVQCPHSFEGKWNAVSETARVRVLHWLFVKALAFHYSDMSADAMKMDVAAGTAASIEANSSGTPMEVEAECAARGEHIPVDF--DERVR----ALSSRLGLPTPSPSSPNHPTPDPSSLLKTLQGILSIIQLRLSPNAEVATKDGAVAR-------LDIDDFPLSYTTHDPLVDRAARALTMLYVADLRELQTDINDILVSAQEFTANPYVACLEGGRG 300
            R L AL+Y     F++DD ++V + + ++ED +IRLY +EDR  LR      W  A QKYL D+ CP    G+  A + T    ++ WL   A+   Y+D    + K      +AA+  A+ S          A +  H+P     D  VR     +++ L LP         PT +P   L+ L+ + ++++ RLSP A    +    AR       +D+   PL ++T+D L+D AA+ L +L++ +LR+LQT +N+++VS Q  TA+P      G  G
Sbjct:    6 RKLQALDYVRAPAFNVDDEHEVRQLIAWLEDTRIRLYKLEDRALLRDVKSDTWPAAGQKYLDDIGCP----GETRASNPT----MVDWLLNHAVNLEYADQHETSDK-----ASAATAGADGSSAMDTTPDAPALQAYHVPASLLMDTAVRKVLNGIAAALQLP---------PTDNP---LELLRAVSALVEDRLSPAAVAEAQSPPEARAATILDSIDLKHVPLGFSTNDALLDEAAKILRLLHIGELRKLQTSVNELIVSVQGLTADPKTDSSLGAVG 261          
BLAST of EWM29081.1 vs. NCBI_GenBank
Match: gi|459178128|ref|XP_004226325.1| (PREDICTED: UPF0568 protein C14orf166 homolog [Ciona intestinalis])

HSP 1 Score: 107.842 bits (268), Expect = 3.508e-24
Identity = 92/273 (33.70%), Postives = 138/273 (50.55%), Query Frame = 0
Query:   34 RLLDALEYPALSTFSLDDPNQV--CKA-VWYIEDRKIRLYDIEDRKPLRTPG-QEWSPALQKYLVDVQCPHSFEGKWNAVSETARVRVLHWLFVKALAFHYSDMSADAMKMDVAAGTAASIEANSSGTPMEVEA--ECAARGEHIPVDFDER-------VRALSSRLGLPTPSPSSPNHPTPDPSSLLKTLQGILSIIQLRLS-PNAEVA-TKDGAVAR-LDIDDFPLSYTTHDPLVDRAARALTMLYVADLRELQTDINDILVSAQEFTANP 290
            R L+AL YP  STF   DP+ V  CK  V ++ED+KIR Y +E+R  L+T   + W  AL+KYL DV  P +         +  +  V+ WL   A+   Y D                 +E  +S +P +VE   E  A  +    D +E+       VR+L+  L +P           PD +    TL+ +  +I+ RLS P  E A T    V R + IDD  L + T DP++++AA+AL +L++ +LR+LQT +N+ +V+ Q  TANP
Sbjct:    4 RKLNALGYPKSSTF---DPSVVEQCKELVIWLEDQKIRHYKVENRVFLKTANAKSWPAALEKYLKDVDYPFT---------KKNQNMVIDWLLGLAVRLEYGD----------------DVEKYNSVSPEKVEKPKENGASAKSPLQDINEKSMEFRTGVRSLAKVLDIPI---------HPDDTV---TLEAVKILIEERLSTPALEAAKTTSKPVGRAVPIDDIKLGFDTGDPMINKAAKALRLLHINELRKLQTQVNEAIVAVQAITANP 236          
BLAST of EWM29081.1 vs. NCBI_GenBank
Match: gi|646700395|gb|KDR10556.1| (hypothetical protein L798_15265 [Zootermopsis nevadensis])

HSP 1 Score: 107.071 bits (266), Expect = 6.345e-24
Identity = 86/273 (31.50%), Postives = 126/273 (46.15%), Query Frame = 0
Query:   34 RLLDALEYPALSTFSLDDPNQVCKAVWYIEDRKIRLYDIEDRKPLRTPG-QEWSPALQKYLVDVQCPHSFEGKWNAVSETARVRVLHWLFVKALAFHYSDMSADAMKMDVAAGTAASIEANSSGTPMEVEAECAARGEHIPVDFDERVRALSSRLGLPTPSPSSPNHPTPDPSSLLKTLQGILSIIQLRLSPNA-----EVATKDGAVARLDIDDFPLSYTTHDPLVDRAARALTMLYVADLRELQTDINDILVSAQEFTANPYVACLEGGRG 300
            R L AL YP+   F+++D  +    V ++ED+KIR Y IEDRK LR     +W    +KY  D+ CP         +       ++ WL   A+   YSD SAD  K      TA  ++ N   TP  V A      +    DF + V  L+  L +     S P+H        L TL+ +  ++  RLS  A      V  K       + D   L + T D ++++AA+ L +LY+ +LR+LQT IN+ +V+ Q  TANP      G  G
Sbjct:    4 RKLTALNYPSPDNFNVNDTTEFRNLVLWLEDQKIRHYKIEDRKALRDINCHDWPKTFRKYGDDLACP---------IQSEKPSELIEWLLAFAVRLEYSD-SADMYK----NQTADHVKKNELNTPKVVSANPLDNLDFQSADFKKGVNTLAQLLQIT----SHPDH--------LITLKAVSKVVCQRLSAEALENPSSVIVKGKPFPFQEAD---LGFDTGDYVLNQAAKILRLLYIQNLRDLQTRINECIVAVQSVTANPKTDTKLGKVG 247          
BLAST of EWM29081.1 vs. NCBI_GenBank
Match: gi|675384275|gb|KFM77172.1| (hypothetical protein X975_23193, partial [Stegodyphus mimosarum])

HSP 1 Score: 105.531 bits (262), Expect = 1.945e-23
Identity = 81/258 (31.40%), Postives = 123/258 (47.67%), Query Frame = 0
Query:   34 RLLDALEYPALSTFSLDDPNQVCKAVWYIEDRKIRLYDIEDRKPLRTPGQ-EWSPALQKYLVDVQCPHSFEGKWNAVSETARVRVLHWLFVKALAFHYSDMSADAMKMDVAAGTAASIEANSSGTPMEVEAECAARGEHIPVDFDERVRALSSRLGLPTPSPSSPNHPTPDPSSLLKTLQGILSIIQLRLSPNAEVATKDGAVARLDIDDFPLSYTTHDPLVDRAARALTMLYVADLRELQTDINDILVSAQEFTANP 290
            R L+AL Y  +  F++         V ++ED+ IR Y IE+R PLR     +W  A + YL  V CP            T R  V  WL   A+   Y D + +  K    + TA S+   SS  P           +    +F   V++L+  LG+   SP  P+H        L+TL  + ++IQ   +   E  TK        + + PL + T DP++D+AA+ L + ++ DLR+LQT IN+I+V+ Q+ TANP
Sbjct:    5 RKLEALGYIKIDDFNVFSDTDFRTLVVWLEDQVIRQYPIENRAPLRVISSPDWEDAFKTYLEAVACPF-----------TDREEVADWLLGYAVRLEYGD-NVEQYK----SVTAESLNQMSSNVPQVKAKNPLDNMDFESTEFKGHVKSLAQLLGV---SPH-PDH--------LETLSAVCTVIQNSFTEALENKTKKKDGKPSPVMELPLGFDTGDPVLDKAAKILRLCFIHDLRDLQTKINEIIVAVQKVTANP 234          
BLAST of EWM29081.1 vs. NCBI_GenBank
Match: gi|817219488|ref|XP_012285473.1| (PREDICTED: UPF0568 protein C14orf166 [Orussus abietinus])

HSP 1 Score: 105.531 bits (262), Expect = 2.470e-23
Identity = 82/271 (30.26%), Postives = 120/271 (44.28%), Query Frame = 0
Query:   34 RLLDALEYPALSTFSLDDPNQVCKAVWYIEDRKIRLYDIEDRKPLRT-PGQEWSPALQKYLVDVQCPHSFEGKWNAVSETARVRVLHWLFVKALAFHYSDMSADAMKMDVAAGTAASIEANSSGTPMEVEAECAARGEHIPVDFDERVRALSSRLGLPTPSPSSPNHPTPDPSSLLKTLQGILSIIQLRLSPNAEVATKDGAVAR---LDIDDFPLSYTTHDPLVDRAARALTMLYVADLRELQTDINDILVSAQEFTANPYVACLEGGRG 300
            R L AL+Y      + +DP    K V ++ED+KIR Y IEDR+ LR    ++W    Q Y  +V CP            ++ +  L WL   A+   Y D      ++     T   ++  S+  P                DF   V A++  L +P      PNH        L TL+    ++  RL+PNA +   +  V +     I D  L +   DP+++ AA+ L +LY+ DLRELQT IN+ +VS Q  TANP      G  G
Sbjct:    4 RKLKALDYMDWDKVNGNDPEHFRKLVVWLEDQKIRNYKIEDRECLRNIQSEDWIKVFQDYCNNVACPIV----------SSPLDQLEWLIGLAIRLEYEDDHKKYQEV-----TIEKVKEKSTVVPSVKSTNPLDNLNFYSEDFKSGVNAIAKILKVP----QHPNH--------LITLEACSKVVCKRLNPNA-IQNPNTVVIKGTPFPIGDVDLGFNMGDPVLNNAAKVLRLLYIHDLRELQTKINEAIVSVQNITANPKTDTKLGKVG 246          
BLAST of EWM29081.1 vs. NCBI_GenBank
Match: gi|1005949455|ref|XP_015783050.1| (PREDICTED: UPF0568 protein C14orf166 homolog [Tetranychus urticae])

HSP 1 Score: 104.375 bits (259), Expect = 8.406e-23
Identity = 78/272 (28.68%), Postives = 121/272 (44.49%), Query Frame = 0
Query:   34 RLLDALEYPALSTFSLDDPNQVCKAVWYIEDRKIRLYDIEDRKPLRTPGQ-EWSPALQKYLVDVQCPHSFEGKWNAVSETARVRVLHWLFVKALAFHYSDMSADAMKMDVAAGTAASIEANSSGTPMEVEAECAARGEHIPVDFDERVRALSSRLGLPTPSPSSPNHPTPDPSSLLKTLQGILSIIQLRLSPNAEVATKD----GAVARLDIDDFPLSYTTHDPLVDRAARALTMLYVADLRELQTDINDILVSAQEFTANPYVACLEGGRG 300
            R L A+E+     F+++D N     V ++ED+KIR Y IE+R  LR     +W  A +KYL  ++CP   +          R  VL WL   A+   Y+D        D        +  N +  P  V+A      +    +F   +  L+  L +P      P+H        L TL+ I  +I+ RL+ +A  + K+           +++  L +   D  + RAA+ L +LY+ DLR+LQ  IN ++VS Q  TANP      G  G
Sbjct:    4 RKLKAIEFGKADNFNVEDENSFRNLVAWLEDQKIRHYPIEERSGLRKISSPDWENAFKKYLESLKCPFDVKD---------RKLVLDWLISTAVRLDYND------NFDKYKDVTGKLVKNQASNPQMVQANPLDNLDFNAKEFKHGIGELAKLLKVP----QHPDH--------LITLKAINHLIKTRLTADALQSEKEELETSGEKSFTLENSILGFDVKDQNLSRAAKVLRILYINDLRDLQNKINQVIVSIQAITANPKTDTSLGQVG 248          
BLAST of EWM29081.1 vs. NCBI_GenBank
Match: gi|156551153|ref|XP_001604251.1| (PREDICTED: UPF0568 protein C14orf166 homolog [Nasonia vitripennis])

HSP 1 Score: 103.605 bits (257), Expect = 1.338e-22
Identity = 81/261 (31.03%), Postives = 122/261 (46.74%), Query Frame = 0
Query:   34 RLLDALEYPALSTFSLDDPNQVCKAVWYIEDRKIRLYDIEDRKPLRT-PGQEWSPALQKYLVDVQCPHSFEGKWNAVSETARVRVLHWLFVKALAFHYSDMSADAMKMDVAAGTAASIEANSSGTPMEVEAECAARGEHIPVDFDERVRALSSRLGLPTPSPSSPNHPTPDPSSLLKTLQGILSIIQLRLSPNAEVATKDGAVAR---LDIDDFPLSYTTHDPLVDRAARALTMLYVADLRELQTDINDILVSAQEFTANP 290
            R L AL+Y     F+ +D   V K V ++ED+KIR Y IEDRK L+     +W    +KYL DV C          +   A +  + WL   A+   + D           A T+++ ++     P    +      +    DF + V AL+  L +P      PNH        L TL+    +I  RL+PNA V   +  + R     I +  + Y   D  +++AA+ L++LY+ DLR+LQT IN+ +VS Q  TANP
Sbjct:    4 RKLKALDYFDCDKFNGNDLQHVKKLVPWLEDQKIRQYKIEDRKDLQNINSDQWPATFEKYLEDVGC----------LPFQALLDKVEWLIGLAIRLEFEDNCEK-----YRAITSSNAKSKHESAPSIKSSNPLDNLDFQSNDFKDGVNALAKLLNIP----QHPNH--------LITLEACSKLICKRLNPNA-VQNPNSVIVRGKPFPIMETEVGYNMGDAALNKAAKVLSLLYIQDLRDLQTKINEAIVSVQSITANP 236          
BLAST of EWM29081.1 vs. NCBI_GenBank
Match: gi|957818856|ref|XP_014671871.1| (PREDICTED: UPF0568 protein C14orf166 homolog isoform X1 [Priapulus caudatus])

HSP 1 Score: 103.219 bits (256), Expect = 2.179e-22
Identity = 82/262 (31.30%), Postives = 120/262 (45.80%), Query Frame = 0
Query:   34 RLLDALEYPALSTFSLDDPNQVCKAVWYIEDRKIRLYDIEDRKPLRT-PGQEWSPALQKYLVDVQCPHSFEGKWNAVSETARVRVLHWLFVKALAFHYSDMSADAMKMDVAAGTAASIEANSSGTPMEVEAECAARGEHIPVDFDERVRALSSRLGLPTPSPSSPNHPTPDPSSLLKTLQGILSIIQLRLSPNAEVATKDG----AVARLDIDDFPLSYTTHDPLVDRAARALTMLYVADLRELQTDINDILVSAQEFTANP 290
            R L AL+Y    +F  D  +     V ++ED KIR Y IEDR  LR     +W     +YL D++CP         V ++    +L WL   A+   Y D +     +     TAAS+ A     P         +      DF   V +L+  L +P      P+H        L TL+ +  +I  RLSP+A  A K       V  L + +  L + T D ++  AA+ L +L++ +LRELQT IN+ +V+AQ  TANP
Sbjct:    4 RKLKALKYQLADSFEFDVESNFKNVVVWLEDHKIRHYKIEDRDALRKLQNPDWQEVFTQYLKDLECP---------VIDSDATTILDWLLGLAVGLEYGDHAEKYKSI-----TAASLAAKKLDQPQMQSDNPLDKLNFDDPDFKAGVTSLAQLLQIP----RHPDH--------LVTLKAVTKLISERLSPDALEAAKSNIPSETVKPLPLANCVLGFETGDYVMSEAAKILRLLHIRELRELQTRINEAIVAAQAITANP 239          
BLAST of EWM29081.1 vs. NCBI_GenBank
Match: gi|1207935180|ref|XP_021357027.1| (UPF0568 protein C14orf166 homolog [Mizuhopecten yessoensis])

HSP 1 Score: 102.834 bits (255), Expect = 2.198e-22
Identity = 79/264 (29.92%), Postives = 125/264 (47.35%), Query Frame = 0
Query:   34 RLLDALEYPALSTFSLDDPNQVCKAVWYIEDRKIRLYDIEDRKPLRT-PGQEWSPALQKYLVDVQCPHSFEGKWNAVSETARVRVLHWLFVKALAFHYSDMSADAMKMDVAAGTAASIEANSSGTPMEVEAECAARGEHIP----VDF-DERVRALSSRLGLPTPSPSSPNHPTPDPSSLLKTLQGILSIIQLRLSPNA-EVATKDGAVARLDIDDFPLSYTTHDPLVDRAARALTMLYVADLRELQTDINDILVSAQEFTANP 290
            R L ALEY    +F  D+ N+    + ++ED+KIR Y IEDR  LR   G +WS ALQ YL ++ C +          +  R  ++ WL   A+   Y +                S++   S TP  V++  AA  +       +DF D   +A  + L +    P   +H        L+ L+ I  +++ RLS  A + AT      ++ +D   L + T D +++ AA+ + +L++ DLR+LQT IN  +V  Q  TANP
Sbjct:    4 RKLCALEYQQADSFDHDNENEFRNLIVWLEDQKIRHYKIEDRTGLRNMNGADWSKALQSYLEELGCSYQ---------QAERTILIDWLLGYAIRLDYGE----------------SVDQYKSVTPDTVKSSAAAPAKSTNPLDNLDFNDADFKAGVASLSMILKVPPHADH--------LEQLKAICLLVKNRLSKEALQKATSQPKGVQVPLDKTELGFETGDYIINEAAKIVRLLHIKDLRDLQTQINAAIVGVQSITANP 234          
The following BLAST results are available for this feature:
BLAST of EWM29081.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111600|gb|EWM29081.1|0.000e+0100.00Protein of unknown function UPF0568 [Nannochlorops... [more]
gi|470322345|ref|XP_004349212.1|9.593e-2731.32homeobox prox 1 [Capsaspora owczarzaki ATCC 30864]... [more]
gi|459178128|ref|XP_004226325.1|3.508e-2433.70PREDICTED: UPF0568 protein C14orf166 homolog [Cion... [more]
gi|646700395|gb|KDR10556.1|6.345e-2431.50hypothetical protein L798_15265 [Zootermopsis neva... [more]
gi|675384275|gb|KFM77172.1|1.945e-2331.40hypothetical protein X975_23193, partial [Stegodyp... [more]
gi|817219488|ref|XP_012285473.1|2.470e-2330.26PREDICTED: UPF0568 protein C14orf166 [Orussus abie... [more]
gi|1005949455|ref|XP_015783050.1|8.406e-2328.68PREDICTED: UPF0568 protein C14orf166 homolog [Tetr... [more]
gi|156551153|ref|XP_001604251.1|1.338e-2231.03PREDICTED: UPF0568 protein C14orf166 homolog [Naso... [more]
gi|957818856|ref|XP_014671871.1|2.179e-2231.30PREDICTED: UPF0568 protein C14orf166 homolog isofo... [more]
gi|1207935180|ref|XP_021357027.1|2.198e-2229.92UPF0568 protein C14orf166 homolog [Mizuhopecten ye... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1619rna1619Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications