rna1615, rna1615 (mRNA) Nannochloropsis gaditana

Overview
Namerna1615
Unique Namerna1615
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1206
Alignment locationCM002457.1:1066863..1067461 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100024g19.4315.mrna
Orig protein idgnl|cribi|Naga_100024g19.4315
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1066863..1067461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100024g19gene1552Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1615rna1615-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29057.1cds1611Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1615 ID=rna1615|Name=rna1615|organism=Nannochloropsis gaditana|type=mRNA|length=1206bp
ATGACCGTGCCCTCCTCCAGTGCTGCCAATGTCGCATCTGCAGCAGCCTC
ACACGCACGAAAAGGCCGCCTTGCTCAAGTTTTTGGTAGAATGACCGTGG
CTTGTCCAGGAGAGATTCGTGCTTATGGCGCTTGTATTGCGGCCAGGCAC
TTCGGAAAGGACACGGAGGCTCACAGTGACCCTCTGGAAAGGCATGACAT
TGCGACGAGCAACAAAAACTGTACGAGCAACTCAACAATCATGCCACGCC
ATGCCCTCCGGGTTTGCAAGCATGGCACCCGGGAGGGAGGATTGTGCGGA
GGTCGCCTGTCTACGTGCCTGCTCTCACTCGGACAGGGGGCTGCCTACTG
TTTTCACCGCGGCGTCACACACAGGCTTGTGAGACTTCCACATTGTCACC
TGGCAATCCCGACTGCAGTACCACTCCGACCTTTTGCATCGTCCGCAGCG
TTTCGTGGCTCTCTTCCCACAAGCGAGGCCAGTAGTGCCAAGTCAGGATC
CTGGGCGTCCCCCTTCTCACGACTGAAATTTGCCGTCAACGTCGCACGGG
CCACCTCCTCCCACGCTTCCTCTTTACCTGCGCCTCTCCGTACCCCCGAG
GTGGAAGAGCATCAGCCAAGCTTGCGCTTCGTGTTTGGAGAGCAAAAGCA
GATCTGCGGGGGCCACGGCGTGCCACAGGAGGTCAGGACCAAGCTTTTCC
CACGTGTGCTGAGGGGAAGCGCCTCCATACTGGCGACCCTCCCTGGTTTC
GGTCTCCCGACTGCTCCATGGGCGCTTCCTCACCCAGGGCGGATTCTCAA
GGAGGGGCACCAGGGCCAGTGGGACATCGTGGGTGTGGACAAGTCGAGTG
CTGACACTCAGAGGCAAGTCGTCGAGGTGGCCACACACGAGGCGGAGGAT
GCCGACAGCCGTGACTGCGACTTGGAAGTCAACGGTCCGTGCCTGCTCTT
CCAAGCTCTCCTGAGGATCGCGCTTGGCCAGCGCTGCAGCACGCGAGATT
GCATTATCGTCTGCATTGTCTTTCTCAGCAGGACCTTGGATCGTTCCGGG
AGTGGAGCCTATCGCAAAGGCCCCTCCATTAAGGAGAGTCAGTTTTCCTG
CGCAATAGTCAACAAGATCAACCAGGGCGTCCCCGGCGGCCTCGCAGGCT
TTGAGATGGTAGAGCAAGACTTGGAGGAGGTTTACCAGGGTGGCCTCATG
GAATAA
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protein sequence of rna1615

>rna1615-protein ID=rna1615-protein|Name=rna1615|organism=Nannochloropsis gaditana|type=polypeptide|length=162bp
MSRGHTLSFQTSSKINSCSRDVILSWAINASTMNSPSWLHVDDPTSCKVK
TRRLLTNSSASRTDRRAEIVTGVSCSCIGKLVPIVAWTVPPDLLLLSLCD
SRRGQELRGQLRGKFFDHNHSLFEAVLNVRKMKKKKMGKKNMGHVAFGIR
SVTGDFRPGLWQ
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mRNA from alignment at CM002457.1:1066863..1067461+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1615 ID=rna1615|Name=rna1615|organism=Nannochloropsis gaditana|type=mRNA|length=599bp|location=Sequence derived from alignment at CM002457.1:1066863..1067461+ (Nannochloropsis gaditana)
ATGAGTCGTGGCCACACTTTGTCTTTCCAAACATCTAGTAAGATCAATTC
ATGCAGCAGGGATGTAATTTTGTCGTGGGCGATAAATGCCTCTACGATGA
ACTCGCCGTCGTGGCTGTCAGGGCAGCGGGCAGACTGATGCGCCTGGGCG
TTCAAGCGCTCCAAGGCCTGATGCTGGCGCAGCCACGTAGATGATCCGAC
CTCCTGCAAAGTAAAAACACGCAGGTTACTTACCAACTCGTCCGCTTCAC
GAACTGATAGAAGAGCGGAGATTGTGACAGGGGTATCCTGCTCTTGTATC
GGTAAGCTAGTACCGATTGTGGCCTGGACCGTTCCTCCGgatttgctgct
gctttcccTATGTGACTCGTGTCCCAATTTGGCACATGGCTTTTTGGACG
ATGACTGCGGAGACGACGCGGACAGGAATTGAGAGGACAATTGCGTGGAA
AGTTCTTCGATCACAACCATAGTCTATTCGAGGCTGTATTGAATGTaaga
aaaatgaagaagaaaaaaatgggaaagaaaaacatGGGCCACGTCGCCTT
TGGTATCAGAAGCGTGACGGGCGATTTCCGGCCAGGTCTATGGCAGTAG
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Coding sequence (CDS) from alignment at CM002457.1:1066863..1067461+

>rna1615 ID=rna1615|Name=rna1615|organism=Nannochloropsis gaditana|type=CDS|length=1467bp|location=Sequence derived from alignment at CM002457.1:1066863..1067461+ (Nannochloropsis gaditana)
ATGAGTCGTGGCCACACTTTGTCTTTCCAAACATCTAGTAAGATCAATTC
ATGCAGCAGGGATGTAATTTTGTCGTGGGCGATAAATGCCTCTACGATGA
ACTCGCCGTCGTGGCTCCACGTAGATGATCCGACCTCCTGCAAAGTAAAA
ACACGCAGGTTACTTACCAACTCGTCCGCTTCACGAACTGATAGAAGAGC
GGAGATTGTGACAGGGGTATCCTGCTCTTGTATCGGTAAGCTAGTACCGA
TTGTGGCCTGGACCGTTCCTCCGgatttgctgctgctttcccTATGTGAC
TCACGACGCGGACAGGAATTGAGAGGACAATTGCGTGGAAAGTTCTTCGA
TCACAACCATAGTCTATTCGAGGCTGTATTGAATGTaagaaaaatgaaga
agaaaaaaatgggaaagaaaaacatGGGCCACGTCGCCTTTGGTATCAGA
AGCGTGACGGGCGATTTCCGGCCAGGTCTATGGCAGTAGATGAGTCGTGG
CCACACTTTGTCTTTCCAAACATCTAGTAAGATCAATTCATGCAGCAGGG
ATGTAATTTTGTCGTGGGCGATAAATGCCTCTACGATGAACTCGCCGTCG
TGGCTCCACGTAGATGATCCGACCTCCTGCAAAGTAAAAACACGCAGGTT
ACTTACCAACTCGTCCGCTTCACGAACTGATAGAAGAGCGGAGATTGTGA
CAGGGGTATCCTGCTCTTGTATCGGTAAGCTAGTACCGATTGTGGCCTGG
ACCGTTCCTCCGgatttgctgctgctttcccTATGTGACTCACGACGCGG
ACAGGAATTGAGAGGACAATTGCGTGGAAAGTTCTTCGATCACAACCATA
GTCTATTCGAGGCTGTATTGAATGTaagaaaaatgaagaagaaaaaaatg
ggaaagaaaaacatGGGCCACGTCGCCTTTGGTATCAGAAGCGTGACGGG
CGATTTCCGGCCAGGTCTATGGCAGTAGATGAGTCGTGGCCACACTTTGT
CTTTCCAAACATCTAGTAAGATCAATTCATGCAGCAGGGATGTAATTTTG
TCGTGGGCGATAAATGCCTCTACGATGAACTCGCCGTCGTGGCTCCACGT
AGATGATCCGACCTCCTGCAAAGTAAAAACACGCAGGTTACTTACCAACT
CGTCCGCTTCACGAACTGATAGAAGAGCGGAGATTGTGACAGGGGTATCC
TGCTCTTGTATCGGTAAGCTAGTACCGATTGTGGCCTGGACCGTTCCTCC
GgatttgctgctgctttcccTATGTGACTCACGACGCGGACAGGAATTGA
GAGGACAATTGCGTGGAAAGTTCTTCGATCACAACCATAGTCTATTCGAG
GCTGTATTGAATGTaagaaaaatgaagaagaaaaaaatgggaaagaaaaa
catGGGCCACGTCGCCTTTGGTATCAGAAGCGTGACGGGCGATTTCCGGC
CAGGTCTATGGCAGTAG
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Synonyms
Publications