rna1613, rna1613 (mRNA) Nannochloropsis gaditana

Overview
Namerna1613
Unique Namerna1613
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length543
Alignment locationCM002457.1:1062579..1064904 -

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Properties
Property NameValue
ProductMitochondrial carrier protein
Orig transcript idgnl|cribi|Naga_100024g22.4314.mrna
Orig protein idgnl|cribi|Naga_100024g22.4314
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1062579..1064904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100024g22gene1550Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1613rna1613-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29056.1cds1609Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1613 ID=rna1613|Name=rna1613|organism=Nannochloropsis gaditana|type=mRNA|length=543bp
GCTACAGGGCTCCTTACGATGAGCACTACTGGGGTCATGCGGGAGGTGAA
TCCGTCCCAGGACAAGGGCAAAGCTAAGACTCCCGACGAAGCTCCTGATG
TGGAAGTGCGAAAAGAAGATCAGGAGATGATCAACGAATTTGGTCGTCTG
AATAATCAGTACCTGGAATTAGACGAGGACCTGGCATATCTTAAGGAGCA
ACTGGAAAAATTGGACGATGCTGTGACCGAGCTAATGGTCGGGGTTGGAG
GCCCCGTGCGATTGTCTTTGGGGGAGGCTTTTATGGATGTGTCTGAGGAT
TATGCAACAGAGCACTGTGAAAGAAAGCAAGAACAGTTGCAGGCGAAAGT
TGAGGAGTTGGGAAGGGAGAAGGGAAAAATTGCGACAAGACAAATGGAAT
TAAAAAAGGTGTTATACGGACGGTTTGGGAGCTCCATTAATTTGGAGAAT
TCGTGAGGGGTTTTGGAAATACGCAGAAAGGAGTACAATTAATCGCCACC
AAGTCCTGGAAAGCTATGGCAAGGGAGCCTGATACGGGGCACG
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protein sequence of rna1613

>rna1613-protein ID=rna1613-protein|Name=rna1613|organism=Nannochloropsis gaditana|type=polypeptide|length=322bp
MAEDTSSTPLDMSFLDAVPHTYRLLASGGIAGCVAKTMTAPLSRLTILFQ
VNSALHVGGRPQYANGLLPALRKVMREEGFLAFWKGNGTSVLHRFPYAGI
NFYSYEKFKEYLGDGSPRNETPFTRLIAGACAGGVACSACYPLDLIRTRL
TIQDEGPGREYRSIGHAFRKIAASEGLGGLYRGLGTTLMVAVPNLAISYC
IYGTMKEVIYHYKYPSRDVTEASEEEPHFLESLVCGATSGICSSLITYPM
DVLRRRLQILGLHPGNHRPGETVGPWNELKTILKHEGPRGLYRGLLPELL
KVTPMVGCTFTTYELMKDVLGV
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mRNA from alignment at CM002457.1:1062579..1064904-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1613 ID=rna1613|Name=rna1613|organism=Nannochloropsis gaditana|type=mRNA|length=2326bp|location=Sequence derived from alignment at CM002457.1:1062579..1064904- (Nannochloropsis gaditana)
AAACGACGCAGTATCCGCAACCTTGCTTGTTGGACAGAGAAGTATCACGT
GAGATATCGTCACTCTACCATCATTTGGTTTATTTTCATGTTCGCGATTT
CTCGCGTTTTTGGTCTCTGTCGAGAAAGCACAACAGGAAGACGAGCCTCC
CCTTCTGCTAGACGCCTTCCATCCCCTCACTGCCTTGGCCAAGACAGAAA
ATGAAACCTGTCATTTGCGCCGCGACTCATAACCCCCTCTGACAAACACA
GAAAGGTGACATAAGCCTACATTTTCTACTACGAGTGATTTGCGGCTGCC
TTCGTGGGCGTGATTGGAGTTTACTCTTACCCAGAATCTCACGTGCCCGC
TGCTTTGCCCCTACTTCACGGTCCCACAGCCCGGGCTTTCCCACGGAGAG
AATCATCTCATAGTCAGCCAAAGTGATTCTAAAGAATTGCTGTGAACGAG
GAGGCTACACGCCACGCTGCGTGGGTCGTTTTCCGGCCCCTGTATTTCCC
TGGTCCTGCTGTGACAATTTACAAGTACGACATGATCGACGGGAAAGGCT
ACATCGGGGTACCTTCTGCACTGTCTTTTAATCCCTAATTTACGCGTATC
GCGCACATCCTTTCGTACCTATCTACAGGATAGATTTGAAGAGGAACGTC
ACCTTGCACGCGGACTTGGTATCCTTGATTGTGTGTACTAAGATCCCGGC
GGCCGAGCCCGCCTAGGCCGCCCCCCCTCCCGTCGCCGGCATCAACATTG
CTCCTCATTCGCGCTAAGGGCTTCTAAATCCCTCCCCATCGCCCTTTTCA
CATGGCCGAAGACACCTCGTCCACGCCGTTGGACATGTCCTTCCTGGACG
CAGTGCCTCACACCTACCGCCTGCTCGCCTCCGGGGGGATTGCTGGGTGC
GTGGCCAAGACCATGACTGCGCCGTTGAGCCGTCTTACCATCCTCTTCCA
AGTGAACAGTGCCCTACATGTAGGCGGGCGGCCTCAATATGCGAACGGTC
TGCTGCCAGCGTTGAGGAAAGTGATGCGGGAAGAAGGCTTCCTGGCCTTC
TGGAAGGTAGGTGGGGGGTGGACAGAGGTCAGGGGTTAGCATGCATGGAT
GCGGTGAGCCTCGAGGGAGACCATCCCAATCCGCCGGCAATTTATTGCTC
GGTCCCTGCGATTGATCACGCCAGAAATAGCATGAAAGCCTGCGTGTGTG
AGCTGGAAGAGAAGAGGAGCGCAATGCAGGAGAGGAAAGCATCTTTTGTC
CTGACCATTTCTTGTTGCCTTTTCCTCGGTCGAGCAGGGAAACGGGACCA
GCGTCCTCCATCGTTTTCCCTACGCAGGCATCAACTTCTACAGCTACGAG
AAATTCAAAGAGTACCTGGGGGACGGTTCCCCCCGGAATGAGACGCCCTT
CACACGCCTGATAGCCGGGGCATGTGCCGGTGGCGTCGCCTGCTCGGCTT
GCTATCCCTTGGATCTGATACGGACCCGCCTGACGATCCAGGACGAAGGC
CCCGGGCGGGAGTACCGGTCGATCGGCCACGCGTTCCGGAAGATTGCGGC
CTCGGAGGGCTTGGGTGGGCTCTACCGGGGGCTGGGCACCACGCTGATGG
TAGCCGTGCCGAATCTGGCCATTAGCTATTGCATCTACGGGACCATGAAG
GAGGTAATATACCACTATAAGTACCCGAGCAGGGACGTGACGGAGGCTTC
GGAGGAGGAGCCGCATTTCTTGGAAAGTCTGGTGTGCGGGGCGACCTCGG
GGATCTGCTCCTCCCTGATCACTTACCCTATGGACGTCCTACGCCGGCGT
CTGCAAATACTAGGGCTGCACCCAGGCAACCATCGCCCGGGAGAGACGGT
GGGGCCGTGGAATGAACTGAAGACGATTTTGAAGCACGAAGGCCCGCGGG
GACTCTACCGGGGACTGCTGCCGGAGCTTTTGAAGGTGACGCCCATGGTC
GGTTGTACCTTTACTACGTATGAGCTGATGAAGGACGTGTTGGGGGTATA
GCTCGGGGGGGGCTTGATGAATGAGTCGGGGGGAATGTGATGGGTGTGGC
GGGGTGGTTCTAGTGATGACAGAGGCATTCCTAGCGCCAAGCAAATTATG
ACAACAGAACAGAGCAAATTGAACTTGCCAGTGGGGAGGACAGCACTTGA
CTGTACGTGCCCCGTATCAGGCTCCCTTGCCATAGCTTTCCAGGACTTGG
TGGCGATTAATTGTACTCCTTTCTGCGTATTTCCAAAACCCCTCACGAAT
TCTCCAAATTAATGGAGCTCCCAAACCGTCCGTATAACACCTTTTTTAAT
TCCATTTGTCTTGTCGCAATTTTTCC
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Coding sequence (CDS) from alignment at CM002457.1:1062579..1064904-

>rna1613 ID=rna1613|Name=rna1613|organism=Nannochloropsis gaditana|type=CDS|length=1938bp|location=Sequence derived from alignment at CM002457.1:1062579..1064904- (Nannochloropsis gaditana)
GGAAACGGGACCAGCGTCCTCCATCGTTTTCCCTACGCAGGCATCAACTT
CTACAGCTACGAGAAATTCAAAGAGTACCTGGGGGACGGTTCCCCCCGGA
ATGAGACGCCCTTCACACGCCTGATAGCCGGGGCATGTGCCGGTGGCGTC
GCCTGCTCGGCTTGCTATCCCTTGGATCTGATACGGACCCGCCTGACGAT
CCAGGACGAAGGCCCCGGGCGGGAGTACCGGTCGATCGGCCACGCGTTCC
GGAAGATTGCGGCCTCGGAGGGCTTGGGTGGGCTCTACCGGGGGCTGGGC
ACCACGCTGATGGTAGCCGTGCCGAATCTGGCCATTAGCTATTGCATCTA
CGGGACCATGAAGGAGGTAATATACCACTATAAGTACCCGAGCAGGGACG
TGACGGAGGCTTCGGAGGAGGAGCCGCATTTCTTGGAAAGTCTGGTGTGC
GGGGCGACCTCGGGGATCTGCTCCTCCCTGATCACTTACCCTATGGACGT
CCTACGCCGGCGTCTGCAAATACTAGGGCTGCACCCAGGCAACCATCGCC
CGGGAGAGACGGTGGGGCCGTGGAATGAACTGAAGACGATTTTGAAGCAC
GAAGGCCCGCGGGGACTCTACCGGGGACTGCTGCCGGAGCTTTTGAAGGT
GACGCCCATGGTCGGTTGTACCTTTACTACGTATGAGCTGATGAAGGACG
TGTTGGGGGTATAGATGGCCGAAGACACCTCGTCCACGCCGTTGGACATG
TCCTTCCTGGACGCAGTGCCTCACACCTACCGCCTGCTCGCCTCCGGGGG
GATTGCTGGGTGCGTGGCCAAGACCATGACTGCGCCGTTGAGCCGTCTTA
CCATCCTCTTCCAAGTGAACAGTGCCCTACATGTAGGCGGGCGGCCTCAA
TATGCGAACGGTCTGCTGCCAGCGTTGAGGAAAGTGATGCGGGAAGAAGG
CTTCCTGGCCTTCTGGAAGGGAAACGGGACCAGCGTCCTCCATCGTTTTC
CCTACGCAGGCATCAACTTCTACAGCTACGAGAAATTCAAAGAGTACCTG
GGGGACGGTTCCCCCCGGAATGAGACGCCCTTCACACGCCTGATAGCCGG
GGCATGTGCCGGTGGCGTCGCCTGCTCGGCTTGCTATCCCTTGGATCTGA
TACGGACCCGCCTGACGATCCAGGACGAAGGCCCCGGGCGGGAGTACCGG
TCGATCGGCCACGCGTTCCGGAAGATTGCGGCCTCGGAGGGCTTGGGTGG
GCTCTACCGGGGGCTGGGCACCACGCTGATGGTAGCCGTGCCGAATCTGG
CCATTAGCTATTGCATCTACGGGACCATGAAGGAGGTAATATACCACTAT
AAGTACCCGAGCAGGGACGTGACGGAGGCTTCGGAGGAGGAGCCGCATTT
CTTGGAAAGTCTGGTGTGCGGGGCGACCTCGGGGATCTGCTCCTCCCTGA
TCACTTACCCTATGGACGTCCTACGCCGGCGTCTGCAAATACTAGGGCTG
CACCCAGGCAACCATCGCCCGGGAGAGACGGTGGGGCCGTGGAATGAACT
GAAGACGATTTTGAAGCACGAAGGCCCGCGGGGACTCTACCGGGGACTGC
TGCCGGAGCTTTTGAAGGTGACGCCCATGGTCGGTTGTACCTTTACTACG
TATGAGCTGATGAAGGACGTGTTGGGGGTATAGATGGCCGAAGACACCTC
GTCCACGCCGTTGGACATGTCCTTCCTGGACGCAGTGCCTCACACCTACC
GCCTGCTCGCCTCCGGGGGGATTGCTGGGTGCGTGGCCAAGACCATGACT
GCGCCGTTGAGCCGTCTTACCATCCTCTTCCAAGTGAACAGTGCCCTACA
TGTAGGCGGGCGGCCTCAATATGCGAACGGTCTGCTGCCAGCGTTGAGGA
AAGTGATGCGGGAAGAAGGCTTCCTGGCCTTCTGGAAG
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Synonyms
Publications